Wall clock time and date at job start Wed Apr 1 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.78047 * 2 1 4 4 C 1.54329 * 110.71577 * 236.76648 * 2 1 3 5 5 N 1.47024 * 107.26810 * 219.44114 * 4 2 1 6 6 C 1.36934 * 125.64979 * 178.98758 * 5 4 2 7 7 H 1.08003 * 119.99975 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00349 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99551 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00298 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46995 * 90.00212 * 10 8 6 12 12 H 1.48495 * 109.47586 * 210.00129 * 10 8 6 13 13 H 1.48497 * 109.47422 * 330.00755 * 10 8 6 14 14 C 1.47434 * 108.70374 * 358.94034 * 5 4 2 15 15 C 1.54909 * 104.82962 * 24.12952 * 14 5 4 16 16 H 1.08993 * 111.03882 * 81.08004 * 15 14 5 17 17 N 1.46503 * 110.99990 * 204.91542 * 15 14 5 18 18 C 1.34771 * 120.00060 * 267.19595 * 17 15 14 19 19 O 1.21280 * 120.00021 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00111 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.33028 * 274.99811 * 20 18 17 22 22 O 1.42722 * 109.33853 * 34.66423 * 20 18 17 23 23 C 1.43184 * 113.17493 * 68.19798 * 22 20 18 24 24 C 1.52974 * 108.31186 * 70.91783 * 23 22 20 25 25 C 1.50742 * 109.75450 * 310.67633 * 24 23 22 26 26 C 1.38591 * 118.76276 * 196.85108 * 25 24 23 27 27 C 1.38076 * 120.27575 * 180.48061 * 26 25 24 28 28 C 1.38255 * 119.86062 * 359.97438 * 27 26 25 29 29 C 1.38056 * 119.89711 * 359.89534 * 28 27 26 30 30 C 1.37906 * 121.34644 * 17.12743 * 25 24 23 31 31 H 1.09001 * 109.47022 * 296.75449 * 1 2 3 32 32 H 1.09000 * 109.47489 * 56.75697 * 1 2 3 33 33 H 1.09002 * 109.46864 * 176.76221 * 1 2 3 34 34 H 1.08994 * 109.88228 * 338.85339 * 4 2 1 35 35 H 1.08997 * 109.88231 * 99.87184 * 4 2 1 36 36 H 0.96998 * 120.00265 * 179.97438 * 9 8 6 37 37 H 1.08994 * 110.36432 * 265.28990 * 14 5 4 38 38 H 1.08997 * 110.36684 * 142.96495 * 14 5 4 39 39 H 0.97003 * 119.99495 * 87.20006 * 17 15 14 40 40 H 1.09001 * 109.46801 * 59.99941 * 21 20 18 41 41 H 1.09001 * 109.46998 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.47050 * 299.99829 * 21 20 18 43 43 H 1.09007 * 109.76516 * 311.24268 * 23 22 20 44 44 H 1.08994 * 109.66453 * 190.53718 * 23 22 20 45 45 H 1.09000 * 109.42127 * 190.59190 * 24 23 22 46 46 H 1.08998 * 109.37385 * 70.73718 * 24 23 22 47 47 H 1.08004 * 119.86423 * 0.45912 * 26 25 24 48 48 H 1.08002 * 120.06857 * 179.97438 * 27 26 25 49 49 H 1.07995 * 120.04868 * 179.88135 * 28 27 26 50 50 H 1.08003 * 119.84865 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2074 5 7 3.2444 -1.5507 -0.7392 6 6 4.0043 -2.3967 -1.5021 7 1 3.7612 -2.5504 -2.5431 8 6 5.0872 -3.0567 -0.9375 9 7 5.3832 -2.8697 0.3312 10 14 6.1233 -4.2113 -1.9779 11 1 7.2325 -3.4500 -2.6067 12 1 6.6844 -5.2839 -1.1178 13 1 5.2768 -4.8178 -3.0367 14 6 3.4633 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4449 -1.6532 1.4378 17 7 2.2216 0.0695 2.3875 18 6 2.1875 -0.4630 3.6251 19 8 2.0383 -1.6581 3.7671 20 6 2.3336 0.4269 4.8325 21 6 3.8197 0.6447 5.1243 22 8 1.7142 1.6856 4.5697 23 6 0.2890 1.6007 4.4619 24 6 -0.2830 1.3295 5.8545 25 6 0.4578 0.1838 6.4954 26 6 -0.1123 -0.4517 7.5871 27 6 0.5437 -1.4981 8.2044 28 6 1.7743 -1.9142 7.7310 29 6 2.3416 -1.2835 6.6418 30 6 1.6835 -0.2332 6.0204 31 1 -0.3633 0.4626 0.9177 32 1 -0.3634 0.5633 -0.8595 33 1 -0.3633 -1.0261 -0.0580 34 1 1.3129 -1.4757 -1.5776 35 1 2.3714 -0.1024 -1.9989 36 1 6.1396 -3.3312 0.7259 37 1 4.1931 -0.4479 0.7983 38 1 3.7960 -2.1426 1.2167 39 1 2.3405 1.0255 2.2738 40 1 4.2935 1.1171 4.2637 41 1 3.9280 1.2886 5.9971 42 1 4.2962 -0.3160 5.3196 43 1 0.0180 0.7865 3.7896 44 1 -0.1067 2.5418 4.0802 45 1 -1.3396 1.0754 5.7692 46 1 -0.1734 2.2220 6.4705 47 1 -1.0736 -0.1267 7.9569 48 1 0.0965 -1.9907 9.0552 49 1 2.2909 -2.7311 8.2126 50 1 3.3032 -1.6088 6.2729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081032152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:08 Heat of formation + Delta-G solvation = -26.446581 kcal Electronic energy + Delta-G solvation = -31739.976100 eV Core-core repulsion = 27732.719900 eV Total energy + Delta-G solvation = -4007.256200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15102 -39.01730 -37.75837 -37.25111 -33.88880 -33.85559 -32.59021 -32.28323 -30.35616 -29.99296 -28.32060 -27.73338 -25.65877 -24.73977 -23.97750 -23.54461 -22.18003 -21.05544 -20.04740 -20.04268 -19.11661 -17.70364 -17.16244 -16.87830 -16.25168 -15.71534 -15.56397 -15.04993 -14.79117 -14.75083 -14.24283 -14.05858 -13.76554 -13.62230 -13.30258 -13.19111 -13.01176 -12.90598 -12.56094 -12.46968 -12.34601 -12.18972 -12.06947 -11.94215 -11.80466 -11.69990 -11.23151 -11.09545 -11.07105 -10.82593 -10.77993 -10.60406 -10.35623 -10.27983 -9.96530 -9.76547 -9.73142 -9.20579 -8.80545 -8.66466 -8.63368 -8.41652 -6.82217 -5.61836 -3.05291 1.23245 1.35357 2.84259 3.31744 3.42098 3.46699 3.49308 3.57209 3.78304 4.43654 4.50907 4.51789 4.64819 4.82257 4.89430 5.00302 5.02052 5.11887 5.16517 5.29020 5.31981 5.33575 5.45369 5.49041 5.52406 5.54809 5.65049 5.67521 5.71446 5.76672 5.92175 5.96968 5.99901 6.05359 6.07052 6.15982 6.24101 6.37377 6.37931 6.47298 6.48225 6.49875 6.67520 6.79578 6.83787 6.92997 6.98513 7.48144 7.63675 7.86000 7.95464 8.38828 8.57331 9.23208 9.84507 10.47921 11.41078 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.003333 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.507608 B = 8399.229123 C = 9541.590064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.226 4.226 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.150 3.850 15 C 0.118 3.882 16 H 0.091 0.909 17 N -0.702 5.702 18 C 0.496 3.504 19 O -0.522 6.522 20 C 0.145 3.855 21 C -0.136 4.136 22 O -0.358 6.358 23 C 0.052 3.948 24 C -0.113 4.113 25 C -0.071 4.071 26 C -0.126 4.126 27 C -0.114 4.114 28 C -0.126 4.126 29 C -0.078 4.078 30 C -0.092 4.092 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.013 0.987 38 H 0.111 0.889 39 H 0.399 0.601 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 10.931 14.327 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.354 4.354 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.024 3.976 15 C 0.013 3.987 16 H 0.109 0.891 17 N -0.353 5.353 18 C 0.279 3.721 19 O -0.398 6.398 20 C 0.102 3.898 21 C -0.193 4.193 22 O -0.277 6.277 23 C -0.024 4.024 24 C -0.150 4.150 25 C -0.071 4.071 26 C -0.144 4.144 27 C -0.132 4.132 28 C -0.144 4.144 29 C -0.096 4.096 30 C -0.093 4.093 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.129 0.871 39 H 0.233 0.767 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.197 10.080 14.398 20.839 hybrid contribution 0.447 -0.336 -0.582 0.807 sum -10.750 9.744 13.816 20.035 Atomic orbital electron populations 1.21730 0.95040 1.01819 1.00785 1.22431 0.95167 0.99220 0.96302 0.90778 1.21332 0.90282 0.93152 0.93706 1.44390 1.30847 1.50469 1.07212 1.19065 1.06256 1.17203 0.92897 0.90363 1.24809 0.98776 1.00557 0.96388 1.69801 1.29894 1.46083 1.10834 0.86073 0.80204 0.80288 0.78924 1.21648 1.21635 1.20675 1.22214 0.89296 1.01064 0.85024 1.22728 1.01111 0.92375 0.82501 0.89100 1.45848 1.72790 1.11302 1.05347 1.20806 0.77375 0.89084 0.84799 1.90747 1.47985 1.15132 1.85918 1.20504 0.95428 0.83413 0.90485 1.21840 0.90168 1.03743 1.03583 1.88099 1.19595 1.28174 1.91805 1.22735 0.80896 1.02997 0.95792 1.21116 0.99690 0.97027 0.97214 1.19439 0.94041 0.97172 0.96448 1.20955 1.00044 0.97093 0.96280 1.21098 0.95327 0.96970 0.99805 1.21095 0.96036 1.00091 0.97136 1.21084 1.00079 0.93975 0.94417 1.19555 0.95114 0.97920 0.96699 0.93265 0.92841 0.92529 0.95541 0.95893 0.93704 0.96877 0.87128 0.76681 0.90495 0.90574 0.89853 0.92221 0.87736 0.89710 0.89582 0.86145 0.86102 0.85859 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.16 37.16 0.34 -1.54 16 2 C -0.11 -1.90 3.19 -88.78 -0.28 -2.18 16 3 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 4 C 0.14 2.95 6.84 -3.06 -0.02 2.93 16 5 N -0.60 -15.68 3.39 -170.07 -0.58 -16.26 16 6 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 7 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.43 10.09 55.49 0.56 -26.87 16 10 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.15 3.74 5.58 -2.52 -0.01 3.72 16 15 C 0.12 2.32 2.87 -65.78 -0.19 2.13 16 16 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 17 N -0.70 -11.66 5.06 -51.73 -0.26 -11.92 16 18 C 0.50 8.63 5.46 -10.99 -0.06 8.57 16 19 O -0.52 -11.21 15.27 5.56 0.08 -11.13 16 20 C 0.14 2.04 0.90 -92.94 -0.08 1.96 16 21 C -0.14 -1.72 8.38 37.16 0.31 -1.41 16 22 O -0.36 -4.47 9.48 -35.23 -0.33 -4.80 16 23 C 0.05 0.55 6.72 37.14 0.25 0.80 16 24 C -0.11 -1.09 6.00 -27.88 -0.17 -1.26 16 25 C -0.07 -0.88 5.77 -104.59 -0.60 -1.48 16 26 C -0.13 -1.38 9.67 -39.51 -0.38 -1.76 16 27 C -0.11 -1.23 10.05 -39.63 -0.40 -1.63 16 28 C -0.13 -1.50 10.05 -39.64 -0.40 -1.90 16 29 C -0.08 -1.08 8.29 -39.50 -0.33 -1.40 16 30 C -0.09 -1.29 4.41 -104.62 -0.46 -1.76 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.11 3.24 5.87 -51.93 -0.31 2.93 16 39 H 0.40 5.69 7.99 -40.82 -0.33 5.36 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.07 6.53 -51.93 -0.34 0.73 16 43 H 0.06 0.72 7.07 -51.93 -0.37 0.35 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 49 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 50 H 0.13 1.76 6.52 -52.48 -0.34 1.41 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -33.61 392.13 -10.31 -43.91 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.92 Total: 6.88 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.74 Total: -3.14 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.28 Total: -55.05 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.25 Total: -15.93 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.61 -10.31 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081032152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.468 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds