Wall clock time and date at job start Wed Apr 1 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.78047 * 2 1 4 4 C 1.54329 * 110.71577 * 236.76648 * 2 1 3 5 5 N 1.47024 * 107.26810 * 219.44114 * 4 2 1 6 6 C 1.36934 * 125.64979 * 178.98758 * 5 4 2 7 7 H 1.08003 * 119.99975 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00349 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99551 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00298 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46995 * 90.00212 * 10 8 6 12 12 H 1.48495 * 109.47586 * 210.00129 * 10 8 6 13 13 H 1.48497 * 109.47422 * 330.00755 * 10 8 6 14 14 C 1.47434 * 108.70374 * 358.94034 * 5 4 2 15 15 C 1.54909 * 104.82962 * 24.12952 * 14 5 4 16 16 H 1.08993 * 111.03882 * 81.08004 * 15 14 5 17 17 N 1.46503 * 110.99990 * 204.91542 * 15 14 5 18 18 C 1.34771 * 120.00060 * 267.19595 * 17 15 14 19 19 O 1.21280 * 120.00021 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00111 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.33028 * 274.99811 * 20 18 17 22 22 O 1.42722 * 109.33853 * 34.66423 * 20 18 17 23 23 C 1.43184 * 113.17493 * 68.19798 * 22 20 18 24 24 C 1.52974 * 108.31186 * 70.91783 * 23 22 20 25 25 C 1.50742 * 109.75450 * 310.67633 * 24 23 22 26 26 C 1.38591 * 118.76276 * 196.85108 * 25 24 23 27 27 C 1.38076 * 120.27575 * 180.48061 * 26 25 24 28 28 C 1.38255 * 119.86062 * 359.97438 * 27 26 25 29 29 C 1.38056 * 119.89711 * 359.89534 * 28 27 26 30 30 C 1.37906 * 121.34644 * 17.12743 * 25 24 23 31 31 H 1.09001 * 109.47022 * 296.75449 * 1 2 3 32 32 H 1.09000 * 109.47489 * 56.75697 * 1 2 3 33 33 H 1.09002 * 109.46864 * 176.76221 * 1 2 3 34 34 H 1.08994 * 109.88228 * 338.85339 * 4 2 1 35 35 H 1.08997 * 109.88231 * 99.87184 * 4 2 1 36 36 H 0.96998 * 120.00265 * 179.97438 * 9 8 6 37 37 H 1.08994 * 110.36432 * 265.28990 * 14 5 4 38 38 H 1.08997 * 110.36684 * 142.96495 * 14 5 4 39 39 H 0.97003 * 119.99495 * 87.20006 * 17 15 14 40 40 H 1.09001 * 109.46801 * 59.99941 * 21 20 18 41 41 H 1.09001 * 109.46998 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.47050 * 299.99829 * 21 20 18 43 43 H 1.09007 * 109.76516 * 311.24268 * 23 22 20 44 44 H 1.08994 * 109.66453 * 190.53718 * 23 22 20 45 45 H 1.09000 * 109.42127 * 190.59190 * 24 23 22 46 46 H 1.08998 * 109.37385 * 70.73718 * 24 23 22 47 47 H 1.08004 * 119.86423 * 0.45912 * 26 25 24 48 48 H 1.08002 * 120.06857 * 179.97438 * 27 26 25 49 49 H 1.07995 * 120.04868 * 179.88135 * 28 27 26 50 50 H 1.08003 * 119.84865 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2074 5 7 3.2444 -1.5507 -0.7392 6 6 4.0043 -2.3967 -1.5021 7 1 3.7612 -2.5504 -2.5431 8 6 5.0872 -3.0567 -0.9375 9 7 5.3832 -2.8697 0.3312 10 14 6.1233 -4.2113 -1.9779 11 1 7.2325 -3.4500 -2.6067 12 1 6.6844 -5.2839 -1.1178 13 1 5.2768 -4.8178 -3.0367 14 6 3.4633 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4449 -1.6532 1.4378 17 7 2.2216 0.0695 2.3875 18 6 2.1875 -0.4630 3.6251 19 8 2.0383 -1.6581 3.7671 20 6 2.3336 0.4269 4.8325 21 6 3.8197 0.6447 5.1243 22 8 1.7142 1.6856 4.5697 23 6 0.2890 1.6007 4.4619 24 6 -0.2830 1.3295 5.8545 25 6 0.4578 0.1838 6.4954 26 6 -0.1123 -0.4517 7.5871 27 6 0.5437 -1.4981 8.2044 28 6 1.7743 -1.9142 7.7310 29 6 2.3416 -1.2835 6.6418 30 6 1.6835 -0.2332 6.0204 31 1 -0.3633 0.4626 0.9177 32 1 -0.3634 0.5633 -0.8595 33 1 -0.3633 -1.0261 -0.0580 34 1 1.3129 -1.4757 -1.5776 35 1 2.3714 -0.1024 -1.9989 36 1 6.1396 -3.3312 0.7259 37 1 4.1931 -0.4479 0.7983 38 1 3.7960 -2.1426 1.2167 39 1 2.3405 1.0255 2.2738 40 1 4.2935 1.1171 4.2637 41 1 3.9280 1.2886 5.9971 42 1 4.2962 -0.3160 5.3196 43 1 0.0180 0.7865 3.7896 44 1 -0.1067 2.5418 4.0802 45 1 -1.3396 1.0754 5.7692 46 1 -0.1734 2.2220 6.4705 47 1 -1.0736 -0.1267 7.9569 48 1 0.0965 -1.9907 9.0552 49 1 2.2909 -2.7311 8.2126 50 1 3.3032 -1.6088 6.2729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081032152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:07 Heat of formation + Delta-G solvation = -47.941319 kcal Electronic energy + Delta-G solvation = -31740.908182 eV Core-core repulsion = 27732.719900 eV Total energy + Delta-G solvation = -4008.188282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24426 -40.36901 -39.09782 -38.48228 -35.66080 -34.82703 -34.24628 -33.21791 -32.18387 -30.92324 -29.65142 -29.05689 -27.43591 -26.02482 -25.12111 -24.76458 -23.38693 -22.27781 -21.66435 -21.48496 -20.34853 -18.95553 -18.80667 -18.20395 -17.43743 -17.02914 -16.87880 -16.46285 -16.09212 -15.95080 -15.61496 -15.34451 -15.08646 -14.66430 -14.51267 -14.43489 -14.28458 -14.20667 -14.09056 -13.92233 -13.45595 -13.39486 -13.28707 -13.09970 -13.04895 -12.88046 -12.86374 -12.66603 -12.61460 -12.23461 -12.08276 -11.96034 -11.86069 -11.72685 -11.63377 -11.46151 -11.27531 -10.78723 -10.44642 -10.02021 -9.74145 -9.57316 -8.92380 -7.79001 -5.25775 0.30725 0.44625 1.43241 1.46030 1.46951 1.55055 2.05467 2.47597 2.55551 2.81912 3.30552 3.44477 3.55098 3.65015 3.68562 3.81582 3.84613 3.94083 4.00680 4.07692 4.16889 4.23508 4.26556 4.47655 4.49251 4.51798 4.58710 4.61500 4.63214 4.65726 4.71195 4.85294 4.86675 4.91841 5.00654 5.04621 5.05471 5.06710 5.16194 5.18864 5.26005 5.42567 5.47900 5.49353 5.56467 5.57880 5.59916 5.77599 5.86872 6.06202 6.25589 6.54914 7.04988 7.20335 7.74430 8.37252 9.21628 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.003333 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.507608 B = 8399.229123 C = 9541.590064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.096 0.904 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.241 4.241 7 H 0.086 0.914 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.982 3.018 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.267 1.267 14 C 0.159 3.841 15 C 0.136 3.864 16 H 0.065 0.935 17 N -0.690 5.690 18 C 0.494 3.506 19 O -0.570 6.570 20 C 0.157 3.843 21 C -0.136 4.136 22 O -0.357 6.357 23 C 0.044 3.956 24 C -0.110 4.110 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.113 4.113 28 C -0.138 4.138 29 C -0.103 4.103 30 C -0.118 4.118 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.030 0.970 35 H 0.034 0.966 36 H 0.244 0.756 37 H -0.009 1.009 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.139 0.861 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.137 0.863 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.926 13.102 14.663 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 H 0.115 0.885 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.370 4.370 7 H 0.104 0.896 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.810 3.190 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.191 1.191 14 C 0.032 3.968 15 C 0.030 3.970 16 H 0.083 0.917 17 N -0.341 5.341 18 C 0.279 3.721 19 O -0.448 6.448 20 C 0.113 3.887 21 C -0.193 4.193 22 O -0.276 6.276 23 C -0.032 4.032 24 C -0.147 4.147 25 C -0.084 4.084 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.156 4.156 29 C -0.121 4.121 30 C -0.119 4.119 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.009 0.991 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.157 0.843 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.170 0.830 48 H 0.169 0.831 49 H 0.155 0.845 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.778 12.310 14.712 23.618 hybrid contribution 1.199 -1.024 -0.670 1.713 sum -12.579 11.286 14.042 21.973 Atomic orbital electron populations 1.21682 0.91905 1.01888 1.03076 1.22383 0.97547 0.98991 0.92390 0.88534 1.21596 0.88646 0.93301 0.95624 1.44693 1.32047 1.50924 1.07623 1.19500 1.06538 1.17391 0.93553 0.89614 1.25715 1.00366 1.02521 0.97578 1.70115 1.30082 1.47103 1.12529 0.85019 0.78572 0.77956 0.77443 1.20998 1.22308 1.19125 1.21855 0.91847 0.98187 0.84886 1.22190 0.97378 0.92888 0.84580 0.91697 1.45685 1.72377 1.11604 1.04476 1.21589 0.75755 0.88968 0.85757 1.90717 1.49979 1.17484 1.86638 1.20273 0.96246 0.83396 0.88741 1.21851 0.89565 1.03535 1.04390 1.88099 1.21049 1.26734 1.91702 1.23024 0.79695 1.04116 0.96360 1.21195 1.00324 0.96661 0.96515 1.19874 0.93487 0.98055 0.96962 1.21374 1.01054 0.96528 0.95526 1.21498 0.94560 0.96775 1.00289 1.21358 0.96974 1.00489 0.96814 1.21148 1.00111 0.95063 0.95773 1.19669 0.96428 0.98676 0.97089 0.91322 0.90094 0.93697 0.95177 0.94806 0.94593 0.99068 0.92129 0.74956 0.90615 0.88505 0.91080 0.94046 0.84311 0.87576 0.87700 0.83004 0.83148 0.84510 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.16 71.98 0.66 -2.51 16 2 C -0.09 -3.04 3.19 -9.60 -0.03 -3.07 16 3 H 0.10 2.74 8.00 -2.39 -0.02 2.72 16 4 C 0.13 5.48 6.84 86.73 0.59 6.07 16 5 N -0.63 -33.51 3.39 -691.97 -2.35 -35.85 16 6 C -0.24 -13.97 10.27 84.04 0.86 -13.10 16 7 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 8 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 9 N -0.95 -59.77 10.09 21.65 0.22 -59.55 16 10 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.16 8.34 5.58 86.85 0.48 8.83 16 15 C 0.14 5.49 2.87 46.38 0.13 5.62 16 16 H 0.06 2.99 7.44 -2.39 -0.02 2.97 16 17 N -0.69 -23.24 5.06 -435.98 -2.21 -25.45 16 18 C 0.49 17.85 5.46 87.66 0.48 18.33 16 19 O -0.57 -26.08 15.27 -3.03 -0.05 -26.12 16 20 C 0.16 4.46 0.90 -12.30 -0.01 4.45 16 21 C -0.14 -3.57 8.38 71.98 0.60 -2.97 16 22 O -0.36 -8.33 9.48 -148.98 -1.41 -9.74 16 23 C 0.04 0.80 6.72 71.97 0.48 1.28 16 24 C -0.11 -1.77 6.00 29.85 0.18 -1.59 16 25 C -0.08 -1.92 5.77 -19.85 -0.11 -2.03 16 26 C -0.13 -2.45 9.67 22.32 0.22 -2.23 16 27 C -0.11 -2.24 10.05 22.24 0.22 -2.02 16 28 C -0.14 -3.32 10.05 22.23 0.22 -3.10 16 29 C -0.10 -2.99 8.29 22.32 0.18 -2.81 16 30 C -0.12 -3.33 4.41 -19.86 -0.09 -3.42 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 34 H 0.03 1.22 7.76 -2.39 -0.02 1.20 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.06 3.82 5.87 -2.39 -0.01 3.81 16 39 H 0.41 11.45 7.99 -92.71 -0.74 10.71 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.07 2.01 6.53 -2.39 -0.02 1.99 16 43 H 0.04 0.91 7.07 -2.38 -0.02 0.90 16 44 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 49 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 50 H 0.11 3.41 6.52 -2.91 -0.02 3.39 16 Total: -1.00 -78.61 392.13 1.98 -76.63 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.20 Total: 28.66 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.55 Total: 2.10 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -4.34 Total: -120.86 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.46 Total: -35.87 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -78.61 1.98 -76.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081032152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.692 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds