Wall clock time and date at job start Wed Apr 1 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.45490 * 2 1 4 4 C 1.54510 * 110.51230 * 237.39803 * 2 1 3 5 5 C 1.54482 * 104.06135 * 241.35412 * 4 2 1 6 6 O 1.44431 * 104.80331 * 23.97897 * 5 4 2 7 7 C 1.44790 * 105.29167 * 319.45312 * 6 5 4 8 8 H 1.08998 * 110.42488 * 281.77783 * 7 6 5 9 9 C 1.50701 * 110.48279 * 159.32921 * 7 6 5 10 10 O 1.21282 * 119.99999 * 359.75705 * 9 7 6 11 11 N 1.34780 * 120.00011 * 179.76816 * 9 7 6 12 12 C 1.48118 * 127.03181 * 179.70864 * 11 9 7 13 13 C 1.54602 * 103.41758 * 219.28217 * 12 11 9 14 14 H 1.08993 * 110.57368 * 81.16944 * 13 12 11 15 15 C 1.50708 * 110.98586 * 204.37579 * 13 12 11 16 16 C 1.38233 * 120.00087 * 53.37654 * 15 13 12 17 17 C 1.38234 * 119.99845 * 179.76508 * 16 15 13 18 18 C 1.38230 * 119.99828 * 0.50834 * 17 16 15 19 19 C 1.38236 * 120.00400 * 359.74999 * 18 17 16 20 20 C 1.38227 * 119.99569 * 233.65424 * 15 13 12 21 21 C 1.54613 * 102.91178 * 322.86711 * 13 12 11 22 22 H 1.09002 * 110.33027 * 262.80869 * 21 13 12 23 23 N 1.46505 * 110.32730 * 140.59259 * 21 13 12 24 24 C 1.36941 * 119.99918 * 157.92192 * 23 21 13 25 25 H 1.07999 * 120.00003 * 0.02562 * 24 23 21 26 26 C 1.38814 * 119.99763 * 179.97438 * 24 23 21 27 27 N 1.31620 * 119.99883 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 119.99990 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47119 * 90.00179 * 28 26 24 30 30 H 1.48501 * 109.47048 * 210.00334 * 28 26 24 31 31 H 1.48501 * 109.46856 * 329.99975 * 28 26 24 32 32 C 1.47481 * 127.03222 * 0.02562 * 11 9 7 33 33 H 1.09001 * 109.47002 * 179.29546 * 1 2 3 34 34 H 1.08993 * 109.46955 * 299.29983 * 1 2 3 35 35 H 1.09000 * 109.47050 * 59.29812 * 1 2 3 36 36 H 1.08999 * 110.51115 * 0.02562 * 4 2 1 37 37 H 1.09000 * 110.51175 * 122.71053 * 4 2 1 38 38 H 1.08998 * 110.37195 * 142.80811 * 5 4 2 39 39 H 1.08994 * 110.37068 * 265.03614 * 5 4 2 40 40 H 1.08996 * 110.66094 * 337.76450 * 12 11 9 41 41 H 1.08999 * 110.65997 * 100.88606 * 12 11 9 42 42 H 1.08002 * 119.99611 * 359.97438 * 16 15 13 43 43 H 1.08003 * 119.99809 * 180.22923 * 17 16 15 44 44 H 1.08006 * 119.99946 * 179.71985 * 18 17 16 45 45 H 1.07999 * 120.00392 * 179.97438 * 19 18 17 46 46 H 1.08005 * 120.00534 * 359.97438 * 20 15 13 47 47 H 0.96999 * 120.00008 * 337.92701 * 23 21 13 48 48 H 0.96996 * 119.99770 * 179.97438 * 27 26 24 49 49 H 1.09003 * 109.91310 * 273.88527 * 32 11 9 50 50 H 1.09003 * 109.91259 * 35.15836 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0715 -0.7797 -1.2191 5 6 2.8758 -1.9414 -0.5946 6 8 2.3070 -2.1187 0.7211 7 6 2.0713 -0.7796 1.2188 8 1 3.0024 -0.3351 1.5705 9 6 1.0480 -0.8006 2.3248 10 8 0.5490 -1.8509 2.6694 11 7 0.6870 0.3479 2.9309 12 6 -0.3006 0.5080 4.0231 13 6 -1.0361 1.8164 3.6527 14 1 -1.8025 1.6255 2.9015 15 6 -1.6380 2.4617 4.8744 16 6 -0.8480 2.7229 5.9782 17 6 -1.3990 3.3193 7.0970 18 6 -2.7423 3.6447 7.1158 19 6 -3.5336 3.3786 6.0140 20 6 -2.9813 2.7870 4.8933 21 6 0.0946 2.6953 3.0701 22 1 0.4777 3.3739 3.8323 23 7 -0.3927 3.4508 1.9133 24 6 0.2510 4.5943 1.5217 25 1 1.1182 4.9389 2.0654 26 6 -0.2104 5.3097 0.4253 27 7 -1.2670 4.8893 -0.2375 28 14 0.6681 6.8691 -0.1093 29 1 1.7283 6.5280 -1.0915 30 1 -0.3075 7.7968 -0.7361 31 1 1.2818 7.5222 1.0748 32 6 1.1899 1.7030 2.6379 33 1 -0.3633 -1.0276 -0.0126 34 1 -0.3633 0.5029 0.8961 35 1 -0.3633 0.5247 -0.8836 36 1 1.2491 -1.1648 -1.8221 37 1 2.7220 -0.1447 -1.8204 38 1 2.7536 -2.8486 -1.1862 39 1 3.9305 -1.6763 -0.5213 40 1 -0.9955 -0.3316 4.0394 41 1 0.2025 0.6110 4.9845 42 1 0.2005 2.4642 5.9652 43 1 -0.7809 3.5268 7.9580 44 1 -3.1738 4.1065 7.9917 45 1 -4.5832 3.6325 6.0289 46 1 -3.5995 2.5792 4.0324 47 1 -1.1714 3.1410 1.4248 48 1 -1.5896 5.3895 -1.0034 49 1 2.1038 1.8898 3.2019 50 1 1.3826 1.8046 1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081182210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:39 Heat of formation + Delta-G solvation = -31.073014 kcal Electronic energy + Delta-G solvation = -31632.605736 eV Core-core repulsion = 27625.148919 eV Total energy + Delta-G solvation = -4007.456818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64017 -39.50334 -38.30315 -37.02301 -34.12265 -33.52371 -32.44913 -30.94934 -30.71641 -30.15247 -28.31451 -27.43877 -26.64332 -24.44897 -23.48174 -22.66808 -22.30567 -21.38699 -20.62864 -19.75600 -18.98311 -17.41504 -16.97394 -16.64068 -16.48193 -15.96474 -15.72938 -15.08435 -14.96877 -14.61182 -14.52441 -14.14990 -13.75067 -13.61007 -13.36806 -13.28125 -13.13776 -13.00135 -12.78553 -12.49224 -12.38640 -12.30993 -11.97857 -11.68056 -11.46864 -11.40638 -11.13364 -10.96707 -10.95700 -10.81337 -10.76078 -10.72173 -10.61225 -10.35382 -10.17040 -9.86852 -9.82010 -9.42941 -9.12029 -8.71011 -8.53189 -8.32285 -7.10683 -5.89327 -3.19727 1.55474 1.61334 2.81386 2.92537 3.34505 3.41226 3.42456 3.96333 4.05252 4.45639 4.48845 4.65154 4.82655 4.87387 4.95619 4.97555 5.11076 5.13653 5.16227 5.24412 5.27983 5.31577 5.44835 5.50432 5.54400 5.60080 5.61547 5.67156 5.71369 5.74122 5.79842 5.80728 5.95770 5.97766 6.08236 6.14976 6.18812 6.21357 6.24416 6.28300 6.32523 6.46880 6.57038 6.62533 6.68437 6.71427 6.82214 6.90705 7.20707 7.58599 7.76838 8.27374 8.37914 9.40040 9.93087 10.28207 11.32213 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007387 B = 0.004942 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3789.614143 B = 5664.069278 C = 8675.369834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 H 0.099 0.901 4 C -0.150 4.150 5 C 0.042 3.958 6 O -0.348 6.348 7 C 0.064 3.936 8 H 0.091 0.909 9 C 0.546 3.454 10 O -0.534 6.534 11 N -0.614 5.614 12 C 0.119 3.881 13 C -0.074 4.074 14 H 0.092 0.908 15 C -0.052 4.052 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.107 4.107 21 C 0.181 3.819 22 H 0.070 0.930 23 N -0.710 5.710 24 C -0.247 4.247 25 H 0.071 0.929 26 C -0.005 4.005 27 N -0.926 5.926 28 Si 0.904 3.096 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.281 1.281 32 C 0.061 3.939 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.057 0.943 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -7.366 6.766 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 H 0.117 0.883 4 C -0.188 4.188 5 C -0.035 4.035 6 O -0.266 6.266 7 C 0.003 3.997 8 H 0.108 0.892 9 C 0.334 3.666 10 O -0.411 6.411 11 N -0.349 5.349 12 C -0.004 4.004 13 C -0.094 4.094 14 H 0.110 0.890 15 C -0.052 4.052 16 C -0.134 4.134 17 C -0.139 4.139 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.125 4.125 21 C 0.068 3.932 22 H 0.087 0.913 23 N -0.350 5.350 24 C -0.378 4.378 25 H 0.089 0.911 26 C -0.202 4.202 27 N -0.574 5.574 28 Si 0.735 3.265 29 H -0.217 1.217 30 H -0.218 1.218 31 H -0.207 1.207 32 C -0.065 4.065 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.221 0.779 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.308 -8.059 6.955 11.147 hybrid contribution 0.366 1.221 -0.737 1.472 sum 3.673 -6.837 6.218 9.945 Atomic orbital electron populations 1.21967 0.93106 1.01791 1.03957 1.22473 0.98185 1.00003 0.92341 0.88324 1.23049 1.00582 0.97120 0.98019 1.23461 0.96749 0.99213 0.84028 1.89285 1.82963 1.23695 1.30671 1.22938 0.97435 0.85126 0.94172 0.89180 1.19616 0.82535 0.82469 0.81951 1.90689 1.55469 1.30119 1.64783 1.48691 1.42570 1.07003 1.36668 1.22395 0.90836 0.97357 0.89816 1.21538 0.98494 0.94238 0.95153 0.89020 1.19567 0.93546 0.97890 0.94234 1.20971 0.99639 0.99589 0.93189 1.21046 0.95251 0.99402 0.98175 1.21059 0.94247 1.01102 0.98445 1.21091 0.99690 0.99293 0.93650 1.21079 0.94735 0.98623 0.98032 1.21163 0.90191 0.90869 0.90945 0.91252 1.42434 1.34639 1.26828 1.31146 1.19193 1.08876 1.00175 1.09514 0.91074 1.24715 0.97942 0.99111 0.98410 1.69651 1.25231 1.40594 1.21886 0.86254 0.78612 0.83248 0.78427 1.21691 1.21778 1.20708 1.23678 0.98794 0.80941 1.03048 0.92828 0.90824 0.91530 0.90232 0.90168 0.88899 0.92193 0.90031 0.90925 0.86184 0.86480 0.86644 0.86421 0.86063 0.77939 0.93399 0.92481 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 7.90 37.16 0.29 -2.11 16 2 C -0.11 -1.57 2.57 -89.05 -0.23 -1.80 16 3 H 0.10 1.42 6.71 -51.93 -0.35 1.07 16 4 C -0.15 -1.75 6.74 -25.16 -0.17 -1.92 16 5 C 0.04 0.49 7.63 37.93 0.29 0.78 16 6 O -0.35 -5.51 10.93 -54.33 -0.59 -6.11 16 7 C 0.06 0.96 3.11 -27.11 -0.08 0.88 16 8 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 9 C 0.55 9.38 5.64 -10.98 -0.06 9.32 16 10 O -0.53 -11.00 16.77 -13.55 -0.23 -11.22 16 11 N -0.61 -9.53 2.35 -169.98 -0.40 -9.93 16 12 C 0.12 1.72 6.46 -2.31 -0.01 1.70 16 13 C -0.07 -1.13 2.97 -90.08 -0.27 -1.40 16 14 H 0.09 1.52 7.55 -51.93 -0.39 1.12 16 15 C -0.05 -0.76 4.93 -104.62 -0.52 -1.27 16 16 C -0.12 -1.54 8.20 -39.58 -0.32 -1.86 16 17 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 18 C -0.13 -1.58 10.05 -39.59 -0.40 -1.97 16 19 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 20 C -0.11 -1.54 9.68 -39.58 -0.38 -1.92 16 21 C 0.18 3.11 3.13 -66.56 -0.21 2.90 16 22 H 0.07 1.22 7.15 -51.93 -0.37 0.85 16 23 N -0.71 -15.51 5.07 -52.10 -0.26 -15.77 16 24 C -0.25 -6.12 9.97 -15.06 -0.15 -6.27 16 25 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 26 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 27 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 28 Si 0.90 20.98 29.55 -169.99 -5.02 15.95 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 32 C 0.06 0.95 5.85 -2.99 -0.02 0.93 16 33 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.07 1.28 5.56 -51.93 -0.29 0.99 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.92 7.73 -51.93 -0.40 0.52 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.23 7.85 -51.93 -0.41 0.83 16 41 H 0.07 0.95 6.73 -51.93 -0.35 0.60 16 42 H 0.12 1.43 7.26 -52.49 -0.38 1.05 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.70 7.98 -52.48 -0.42 1.28 16 47 H 0.39 9.19 7.54 -40.82 -0.31 8.88 16 48 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.09 1.55 4.83 -51.93 -0.25 1.30 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -30.45 393.65 -10.68 -41.13 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.69 Total: 13.19 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.13 Total: -8.05 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.06 Total: -50.81 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.82 Total: -17.33 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.45 -10.68 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081182210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.053 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds