Wall clock time and date at job start Wed Apr 1 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.45490 * 2 1 4 4 C 1.54510 * 110.51230 * 237.39803 * 2 1 3 5 5 C 1.54482 * 104.06135 * 241.35412 * 4 2 1 6 6 O 1.44431 * 104.80331 * 23.97897 * 5 4 2 7 7 C 1.44790 * 105.29167 * 319.45312 * 6 5 4 8 8 H 1.08998 * 110.42488 * 281.77783 * 7 6 5 9 9 C 1.50701 * 110.48279 * 159.32921 * 7 6 5 10 10 O 1.21282 * 119.99999 * 359.75705 * 9 7 6 11 11 N 1.34780 * 120.00011 * 179.76816 * 9 7 6 12 12 C 1.48118 * 127.03181 * 179.70864 * 11 9 7 13 13 C 1.54602 * 103.41758 * 219.28217 * 12 11 9 14 14 H 1.08993 * 110.57368 * 81.16944 * 13 12 11 15 15 C 1.50708 * 110.98586 * 204.37579 * 13 12 11 16 16 C 1.38233 * 120.00087 * 53.37654 * 15 13 12 17 17 C 1.38234 * 119.99845 * 179.76508 * 16 15 13 18 18 C 1.38230 * 119.99828 * 0.50834 * 17 16 15 19 19 C 1.38236 * 120.00400 * 359.74999 * 18 17 16 20 20 C 1.38227 * 119.99569 * 233.65424 * 15 13 12 21 21 C 1.54613 * 102.91178 * 322.86711 * 13 12 11 22 22 H 1.09002 * 110.33027 * 262.80869 * 21 13 12 23 23 N 1.46505 * 110.32730 * 140.59259 * 21 13 12 24 24 C 1.36941 * 119.99918 * 157.92192 * 23 21 13 25 25 H 1.07999 * 120.00003 * 0.02562 * 24 23 21 26 26 C 1.38814 * 119.99763 * 179.97438 * 24 23 21 27 27 N 1.31620 * 119.99883 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 119.99990 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47119 * 90.00179 * 28 26 24 30 30 H 1.48501 * 109.47048 * 210.00334 * 28 26 24 31 31 H 1.48501 * 109.46856 * 329.99975 * 28 26 24 32 32 C 1.47481 * 127.03222 * 0.02562 * 11 9 7 33 33 H 1.09001 * 109.47002 * 179.29546 * 1 2 3 34 34 H 1.08993 * 109.46955 * 299.29983 * 1 2 3 35 35 H 1.09000 * 109.47050 * 59.29812 * 1 2 3 36 36 H 1.08999 * 110.51115 * 0.02562 * 4 2 1 37 37 H 1.09000 * 110.51175 * 122.71053 * 4 2 1 38 38 H 1.08998 * 110.37195 * 142.80811 * 5 4 2 39 39 H 1.08994 * 110.37068 * 265.03614 * 5 4 2 40 40 H 1.08996 * 110.66094 * 337.76450 * 12 11 9 41 41 H 1.08999 * 110.65997 * 100.88606 * 12 11 9 42 42 H 1.08002 * 119.99611 * 359.97438 * 16 15 13 43 43 H 1.08003 * 119.99809 * 180.22923 * 17 16 15 44 44 H 1.08006 * 119.99946 * 179.71985 * 18 17 16 45 45 H 1.07999 * 120.00392 * 179.97438 * 19 18 17 46 46 H 1.08005 * 120.00534 * 359.97438 * 20 15 13 47 47 H 0.96999 * 120.00008 * 337.92701 * 23 21 13 48 48 H 0.96996 * 119.99770 * 179.97438 * 27 26 24 49 49 H 1.09003 * 109.91310 * 273.88527 * 32 11 9 50 50 H 1.09003 * 109.91259 * 35.15836 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0715 -0.7797 -1.2191 5 6 2.8758 -1.9414 -0.5946 6 8 2.3070 -2.1187 0.7211 7 6 2.0713 -0.7796 1.2188 8 1 3.0024 -0.3351 1.5705 9 6 1.0480 -0.8006 2.3248 10 8 0.5490 -1.8509 2.6694 11 7 0.6870 0.3479 2.9309 12 6 -0.3006 0.5080 4.0231 13 6 -1.0361 1.8164 3.6527 14 1 -1.8025 1.6255 2.9015 15 6 -1.6380 2.4617 4.8744 16 6 -0.8480 2.7229 5.9782 17 6 -1.3990 3.3193 7.0970 18 6 -2.7423 3.6447 7.1158 19 6 -3.5336 3.3786 6.0140 20 6 -2.9813 2.7870 4.8933 21 6 0.0946 2.6953 3.0701 22 1 0.4777 3.3739 3.8323 23 7 -0.3927 3.4508 1.9133 24 6 0.2510 4.5943 1.5217 25 1 1.1182 4.9389 2.0654 26 6 -0.2104 5.3097 0.4253 27 7 -1.2670 4.8893 -0.2375 28 14 0.6681 6.8691 -0.1093 29 1 1.7283 6.5280 -1.0915 30 1 -0.3075 7.7968 -0.7361 31 1 1.2818 7.5222 1.0748 32 6 1.1899 1.7030 2.6379 33 1 -0.3633 -1.0276 -0.0126 34 1 -0.3633 0.5029 0.8961 35 1 -0.3633 0.5247 -0.8836 36 1 1.2491 -1.1648 -1.8221 37 1 2.7220 -0.1447 -1.8204 38 1 2.7536 -2.8486 -1.1862 39 1 3.9305 -1.6763 -0.5213 40 1 -0.9955 -0.3316 4.0394 41 1 0.2025 0.6110 4.9845 42 1 0.2005 2.4642 5.9652 43 1 -0.7809 3.5268 7.9580 44 1 -3.1738 4.1065 7.9917 45 1 -4.5832 3.6325 6.0289 46 1 -3.5995 2.5792 4.0324 47 1 -1.1714 3.1410 1.4248 48 1 -1.5896 5.3895 -1.0034 49 1 2.1038 1.8898 3.2019 50 1 1.3826 1.8046 1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081182210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:38 Heat of formation + Delta-G solvation = -46.926499 kcal Electronic energy + Delta-G solvation = -31633.293195 eV Core-core repulsion = 27625.148919 eV Total energy + Delta-G solvation = -4008.144276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88749 -40.62293 -39.44799 -38.37784 -35.81115 -34.76405 -33.69736 -32.63180 -31.72377 -31.20107 -29.57649 -28.87733 -27.87928 -25.99687 -24.91360 -23.69786 -23.35286 -22.63075 -21.80648 -21.05823 -20.25084 -19.09749 -18.25098 -17.84941 -17.62923 -17.25240 -16.94399 -16.45109 -16.15600 -15.95677 -15.62324 -15.29067 -15.24180 -15.09738 -14.74709 -14.49654 -14.34156 -14.07670 -14.01456 -13.77017 -13.59371 -13.53003 -13.30674 -13.20634 -12.84920 -12.67514 -12.52871 -12.42229 -12.30840 -12.15811 -11.93127 -11.90499 -11.81451 -11.74121 -11.70095 -11.53547 -11.02598 -10.95640 -10.67243 -9.81195 -9.70277 -9.52609 -8.91698 -7.88102 -5.16479 0.52066 0.59232 1.47722 1.51464 1.53119 1.59876 1.69945 2.59712 2.90188 2.97490 3.32796 3.42017 3.50784 3.65235 3.73115 3.78764 3.85022 4.04745 4.09930 4.16158 4.16833 4.22601 4.23355 4.31805 4.37025 4.39168 4.40731 4.59322 4.60695 4.66208 4.68902 4.71359 4.79345 4.82176 4.91498 4.93264 4.97687 5.04148 5.09456 5.13024 5.20268 5.23708 5.25848 5.39219 5.60084 5.66128 5.69792 5.72318 5.81089 6.20839 6.31102 6.45724 7.04711 7.39997 8.11181 8.35543 9.34401 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007387 B = 0.004942 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3789.614143 B = 5664.069278 C = 8675.369834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.145 4.145 5 C 0.040 3.960 6 O -0.378 6.378 7 C 0.067 3.933 8 H 0.115 0.885 9 C 0.541 3.459 10 O -0.575 6.575 11 N -0.609 5.609 12 C 0.122 3.878 13 C -0.060 4.060 14 H 0.068 0.932 15 C -0.070 4.070 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.131 4.131 21 C 0.179 3.821 22 H 0.074 0.926 23 N -0.719 5.719 24 C -0.232 4.232 25 H 0.081 0.919 26 C -0.065 4.065 27 N -0.964 5.964 28 Si 0.960 3.040 29 H -0.288 1.288 30 H -0.305 1.305 31 H -0.271 1.271 32 C 0.070 3.930 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.134 0.866 46 H 0.111 0.889 47 H 0.373 0.627 48 H 0.247 0.753 49 H 0.085 0.915 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.693 -6.818 8.325 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.117 0.883 4 C -0.183 4.183 5 C -0.036 4.036 6 O -0.297 6.297 7 C 0.006 3.994 8 H 0.132 0.868 9 C 0.331 3.669 10 O -0.455 6.455 11 N -0.342 5.342 12 C 0.000 4.000 13 C -0.080 4.080 14 H 0.087 0.913 15 C -0.071 4.071 16 C -0.141 4.141 17 C -0.139 4.139 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.149 4.149 21 C 0.069 3.931 22 H 0.092 0.908 23 N -0.357 5.357 24 C -0.363 4.363 25 H 0.099 0.901 26 C -0.258 4.258 27 N -0.614 5.614 28 Si 0.790 3.210 29 H -0.215 1.215 30 H -0.232 1.232 31 H -0.196 1.196 32 C -0.055 4.055 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.152 0.848 46 H 0.129 0.871 47 H 0.205 0.795 48 H 0.056 0.944 49 H 0.103 0.897 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.551 -7.507 8.558 12.666 hybrid contribution -0.374 1.021 -1.113 1.556 sum 5.177 -6.486 7.446 11.150 Atomic orbital electron populations 1.21859 0.94999 1.00591 1.02614 1.22441 0.96431 1.00352 0.93567 0.88316 1.23053 1.00928 0.97265 0.97054 1.23715 0.97698 0.99858 0.82347 1.89262 1.83552 1.24166 1.32683 1.22998 0.97586 0.85331 0.93463 0.86788 1.20112 0.82630 0.82054 0.82141 1.90662 1.57165 1.31528 1.66133 1.48688 1.42293 1.06759 1.36485 1.22448 0.90667 0.96436 0.90496 1.21311 0.97337 0.94260 0.95113 0.91326 1.19568 0.93911 0.99084 0.94518 1.21183 1.00251 0.99615 0.93008 1.21431 0.95683 0.98225 0.98570 1.21450 0.94317 1.00225 0.98867 1.21359 1.00849 0.98879 0.93436 1.21193 0.95044 0.99995 0.98704 1.21311 0.91230 0.91115 0.89441 0.90815 1.42541 1.34209 1.26745 1.32250 1.19556 1.08194 1.00159 1.08420 0.90114 1.25364 0.99044 1.01989 0.99374 1.69804 1.27190 1.41841 1.22587 0.85344 0.77279 0.80207 0.78145 1.21475 1.23237 1.19564 1.23471 0.98884 0.80221 1.02883 0.93870 0.92760 0.92217 0.90452 0.88010 0.87363 0.89777 0.91064 0.88592 0.84716 0.83623 0.83843 0.84777 0.87134 0.79499 0.94365 0.89651 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 7.90 71.98 0.57 -4.14 16 2 C -0.11 -2.99 2.57 -9.78 -0.03 -3.02 16 3 H 0.10 2.72 6.71 -2.38 -0.02 2.71 16 4 C -0.15 -3.14 6.74 31.61 0.21 -2.93 16 5 C 0.04 0.82 7.63 72.49 0.55 1.38 16 6 O -0.38 -11.53 10.93 -130.71 -1.43 -12.96 16 7 C 0.07 1.92 3.11 30.35 0.09 2.02 16 8 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 9 C 0.54 18.50 5.64 87.66 0.49 18.99 16 10 O -0.58 -24.07 16.77 15.23 0.26 -23.82 16 11 N -0.61 -18.57 2.35 -810.09 -1.91 -20.48 16 12 C 0.12 3.50 6.46 86.61 0.56 4.06 16 13 C -0.06 -1.86 2.97 -10.44 -0.03 -1.89 16 14 H 0.07 2.43 7.55 -2.39 -0.02 2.41 16 15 C -0.07 -2.04 4.93 -19.87 -0.10 -2.13 16 16 C -0.12 -3.01 8.20 22.27 0.18 -2.83 16 17 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 18 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 19 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 20 C -0.13 -3.86 9.68 22.27 0.22 -3.64 16 21 C 0.18 6.06 3.13 45.88 0.14 6.21 16 22 H 0.07 2.47 7.15 -2.39 -0.02 2.45 16 23 N -0.72 -31.67 5.07 -318.74 -1.62 -33.29 16 24 C -0.23 -11.37 9.97 84.03 0.84 -10.53 16 25 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 26 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 27 N -0.96 -55.16 13.06 21.65 0.28 -54.88 16 28 Si 0.96 43.12 29.55 68.60 2.03 45.15 16 29 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 30 H -0.31 -14.27 7.11 99.48 0.71 -13.56 16 31 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 32 C 0.07 2.09 5.85 86.53 0.51 2.60 16 33 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.05 1.97 5.56 -2.39 -0.01 1.95 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 1.70 7.73 -2.39 -0.02 1.68 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 41 H 0.10 2.33 6.73 -2.39 -0.02 2.32 16 42 H 0.14 2.82 7.26 -2.91 -0.02 2.80 16 43 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.11 3.34 7.98 -2.91 -0.02 3.32 16 47 H 0.37 18.42 7.54 -92.71 -0.70 17.73 16 48 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 50 H 0.08 2.68 4.83 -2.39 -0.01 2.67 16 Total: -1.00 -66.98 393.65 3.21 -63.77 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: 0.25 Total: 43.23 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.35 Total: -6.73 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.24 Total: -108.64 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.17 Total: -36.77 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.98 3.21 -63.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081182210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.844 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds