Wall clock time and date at job start Wed Apr 1 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.63980 * 2 1 4 4 C 1.54321 * 110.72618 * 236.65658 * 2 1 3 5 5 N 1.47017 * 107.27556 * 219.44209 * 4 2 1 6 6 C 1.34768 * 125.65231 * 178.89129 * 5 4 2 7 7 O 1.21552 * 120.00325 * 174.87303 * 6 5 4 8 8 C 1.47846 * 119.99779 * 354.87733 * 6 5 4 9 9 C 1.39599 * 120.14631 * 8.04096 * 8 6 5 10 10 C 1.37937 * 119.85411 * 179.97438 * 9 8 6 11 11 C 1.38378 * 120.14771 * 359.97229 * 10 9 8 12 12 C 1.38341 * 120.28976 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.92457 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.45769 * 179.30300 * 13 12 11 15 15 C 1.54509 * 110.51148 * 301.90198 * 13 12 11 16 16 C 1.54480 * 104.06161 * 118.64648 * 15 13 12 17 17 O 1.44416 * 104.80368 * 23.98002 * 16 15 13 18 18 C 1.44645 * 105.36967 * 319.56722 * 17 16 15 19 19 C 1.37976 * 120.14495 * 359.74360 * 12 11 10 20 20 C 1.47424 * 108.70156 * 358.94061 * 5 4 2 21 21 C 1.54913 * 104.83245 * 24.12970 * 20 5 4 22 22 H 1.08991 * 111.00645 * 81.06779 * 21 20 5 23 23 N 1.46505 * 111.03638 * 204.90185 * 21 20 5 24 24 C 1.36933 * 120.00172 * 270.39409 * 23 21 20 25 25 H 1.08003 * 119.99619 * 0.02562 * 24 23 21 26 26 C 1.38806 * 120.00280 * 180.02562 * 24 23 21 27 27 N 1.31626 * 119.99955 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00371 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47236 * 89.99325 * 28 26 24 30 30 H 1.48494 * 109.47360 * 209.99901 * 28 26 24 31 31 H 1.48501 * 109.46629 * 329.99652 * 28 26 24 32 32 H 1.09000 * 109.47450 * 296.86165 * 1 2 3 33 33 H 1.08992 * 109.47094 * 56.86947 * 1 2 3 34 34 H 1.09004 * 109.46574 * 176.86385 * 1 2 3 35 35 H 1.09000 * 109.88132 * 338.86320 * 4 2 1 36 36 H 1.09002 * 109.87864 * 99.87054 * 4 2 1 37 37 H 1.07996 * 120.07185 * 359.94881 * 9 8 6 38 38 H 1.07998 * 119.92403 * 179.97438 * 10 9 8 39 39 H 1.07993 * 119.85790 * 179.97438 * 11 10 9 40 40 H 1.09002 * 110.51219 * 237.29056 * 15 13 12 41 41 H 1.08997 * 110.51415 * 0.02562 * 15 13 12 42 42 H 1.09001 * 110.37127 * 142.81116 * 16 15 13 43 43 H 1.09001 * 110.37184 * 265.14612 * 16 15 13 44 44 H 1.09003 * 110.33557 * 281.59302 * 18 17 16 45 45 H 1.08999 * 110.51083 * 159.18834 * 18 17 16 46 46 H 1.08004 * 120.07318 * 180.25445 * 19 12 11 47 47 H 1.09000 * 110.36980 * 265.28802 * 20 5 4 48 48 H 1.09007 * 110.37094 * 142.96340 * 20 5 4 49 49 H 0.97002 * 120.00226 * 90.39075 * 23 21 20 50 50 H 0.97004 * 119.99776 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2446 -1.5519 -0.7361 6 6 3.9915 -2.3873 -1.4848 7 8 4.9932 -2.8921 -1.0165 8 6 3.5925 -2.6897 -2.8760 9 6 2.5438 -1.9878 -3.4729 10 6 2.1769 -2.2745 -4.7713 11 6 2.8463 -3.2550 -5.4822 12 6 3.8865 -3.9543 -4.8966 13 6 4.6094 -5.0208 -5.6783 14 1 5.4042 -5.4615 -5.0764 15 6 3.6206 -6.1101 -6.1503 16 6 3.7104 -6.0562 -7.6915 17 8 5.0099 -5.4889 -7.9658 18 6 5.1829 -4.4368 -6.9883 19 6 4.2666 -3.6740 -3.6002 20 6 3.4633 -1.2484 0.6898 21 6 2.0789 -0.7932 1.2153 22 1 1.4452 -1.6509 1.4405 23 7 2.2205 0.0738 2.3877 24 6 2.2510 -0.4720 3.6432 25 1 2.1712 -1.5417 3.7691 26 6 2.3846 0.3495 4.7541 27 7 2.4824 1.6531 4.6007 28 14 2.4270 -0.3951 6.4668 29 1 3.8311 -0.7059 6.8368 30 1 1.8607 0.5718 7.4411 31 1 1.6228 -1.6434 6.4838 32 1 -0.3634 0.4643 0.9168 33 1 -0.3633 0.5616 -0.8605 34 1 -0.3632 -1.0262 -0.0562 35 1 1.3131 -1.4787 -1.5749 36 1 2.3716 -0.1060 -1.9985 37 1 2.0206 -1.2224 -2.9191 38 1 1.3655 -1.7325 -5.2340 39 1 2.5549 -3.4760 -6.4984 40 1 3.9279 -7.0896 -5.7838 41 1 2.6087 -5.8771 -5.8187 42 1 3.6382 -7.0596 -8.1111 43 1 2.9247 -5.4177 -8.0953 44 1 4.6243 -3.5490 -7.2845 45 1 6.2395 -4.1983 -6.8669 46 1 5.0815 -4.2178 -3.1456 47 1 4.1931 -0.4463 0.7994 48 1 3.7961 -2.1403 1.2210 49 1 2.2926 1.0345 2.2747 50 1 2.5762 2.2271 5.3770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082605935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:40 Heat of formation + Delta-G solvation = -21.971741 kcal Electronic energy + Delta-G solvation = -29790.147347 eV Core-core repulsion = 25783.085190 eV Total energy + Delta-G solvation = -4007.062157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.80652 -39.94036 -38.42198 -37.47283 -34.46906 -33.68926 -32.42499 -31.35192 -30.94653 -30.42802 -28.95610 -27.49185 -26.57882 -24.57939 -23.83117 -23.05609 -22.70711 -21.77797 -20.75662 -20.07498 -19.42203 -17.48246 -17.16568 -16.79865 -16.63779 -16.11402 -15.87790 -15.61946 -15.36702 -14.91306 -14.59384 -14.33452 -14.00187 -13.80045 -13.70366 -13.44858 -13.20343 -13.11045 -13.02281 -12.88325 -12.68745 -12.42882 -12.06326 -11.85544 -11.76094 -11.63309 -11.59149 -11.39382 -11.12112 -11.07317 -10.96071 -10.73460 -10.55865 -10.27511 -10.21438 -9.96429 -9.77787 -9.73788 -9.18846 -9.03485 -8.99022 -8.41137 -7.10960 -5.86859 -3.17597 0.68640 1.08599 2.82023 3.09710 3.39745 3.45648 3.46323 3.52886 3.67489 4.21157 4.25339 4.42558 4.47447 4.50614 4.61889 4.64050 4.68556 4.80356 4.86205 4.88467 5.00017 5.07588 5.18948 5.21979 5.30700 5.31476 5.38944 5.40992 5.45377 5.53132 5.54828 5.60339 5.65303 5.74403 5.75772 5.81172 5.95151 6.10069 6.11160 6.13056 6.20790 6.23039 6.34079 6.35073 6.43040 6.52904 6.55333 6.65850 6.84930 7.63051 7.69117 8.27757 8.31103 9.42795 9.95219 10.30232 11.34957 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.002046 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.371612 B =13684.948812 C =14311.885022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.087 0.913 4 C 0.098 3.902 5 N -0.605 5.605 6 C 0.565 3.435 7 O -0.542 6.542 8 C -0.120 4.120 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.097 4.097 12 C -0.089 4.089 13 C -0.082 4.082 14 H 0.094 0.906 15 C -0.148 4.148 16 C 0.044 3.956 17 O -0.376 6.376 18 C 0.052 3.948 19 C -0.057 4.057 20 C 0.081 3.919 21 C 0.177 3.823 22 H 0.067 0.933 23 N -0.709 5.709 24 C -0.248 4.248 25 H 0.072 0.928 26 C -0.008 4.008 27 N -0.929 5.929 28 Si 0.908 3.092 29 H -0.288 1.288 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.163 0.837 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.134 0.866 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.387 0.613 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -9.844 -25.629 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.105 0.895 4 C -0.025 4.025 5 N -0.338 5.338 6 C 0.354 3.646 7 O -0.421 6.421 8 C -0.123 4.123 9 C -0.143 4.143 10 C -0.142 4.142 11 C -0.115 4.115 12 C -0.089 4.089 13 C -0.101 4.101 14 H 0.113 0.887 15 C -0.186 4.186 16 C -0.033 4.033 17 O -0.295 6.295 18 C -0.025 4.025 19 C -0.076 4.076 20 C -0.044 4.044 21 C 0.065 3.935 22 H 0.085 0.915 23 N -0.348 5.348 24 C -0.379 4.379 25 H 0.090 0.910 26 C -0.205 4.205 27 N -0.577 5.577 28 Si 0.739 3.261 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.180 0.820 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.152 0.848 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.222 0.778 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.124 -10.299 -25.370 27.463 hybrid contribution -0.004 0.074 1.097 1.100 sum -2.128 -10.226 -24.273 26.424 Atomic orbital electron populations 1.21684 0.93764 1.01584 1.02264 1.22571 0.96556 0.99996 0.94560 0.89483 1.22592 0.88000 0.94520 0.97430 1.48381 1.29472 1.43279 1.12679 1.17968 0.82855 0.78756 0.85021 1.90769 1.25385 1.52643 1.73259 1.19977 0.98501 0.99401 0.94405 1.22857 0.95881 0.99700 0.95816 1.21130 1.00341 0.98250 0.94527 1.21149 0.95150 0.95543 0.99675 1.19576 0.97258 0.97858 0.94237 1.21523 0.97766 0.93994 0.96771 0.88743 1.23079 1.00282 0.99365 0.95880 1.23452 0.85892 0.99280 0.94673 1.89165 1.35156 1.50624 1.54541 1.23625 1.02115 0.90716 0.86021 1.21163 0.98158 0.95428 0.92811 1.23495 1.01935 1.01113 0.77857 1.21382 0.91875 0.93626 0.86646 0.91492 1.42276 1.86742 1.05478 1.00332 1.19240 1.43150 0.92225 0.83249 0.90969 1.24764 1.02264 0.95391 0.98049 1.69660 1.56353 1.02245 1.29417 0.86175 0.77731 0.77932 0.84249 1.21563 1.21712 1.20651 0.91138 0.93137 0.92843 0.90574 0.90929 0.82008 0.85382 0.86018 0.90176 0.89934 0.88974 0.92242 0.91680 0.88646 0.84771 0.91256 0.90946 0.77839 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.16 37.16 0.34 -1.34 16 2 C -0.12 -1.66 3.18 -88.79 -0.28 -1.94 16 3 H 0.09 1.28 8.00 -51.93 -0.42 0.86 16 4 C 0.10 1.19 4.47 -3.07 -0.01 1.18 16 5 N -0.61 -9.57 3.33 -174.95 -0.58 -10.15 16 6 C 0.56 9.38 7.81 -12.33 -0.10 9.28 16 7 O -0.54 -10.93 16.67 5.32 0.09 -10.84 16 8 C -0.12 -1.56 5.87 -104.97 -0.62 -2.18 16 9 C -0.13 -1.28 8.60 -39.18 -0.34 -1.62 16 10 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 11 C -0.10 -0.78 8.11 -39.49 -0.32 -1.10 16 12 C -0.09 -0.82 4.77 -104.68 -0.50 -1.32 16 13 C -0.08 -0.63 3.33 -90.21 -0.30 -0.94 16 14 H 0.09 0.74 7.93 -51.93 -0.41 0.32 16 15 C -0.15 -0.97 6.50 -25.16 -0.16 -1.13 16 16 C 0.04 0.28 7.64 37.93 0.29 0.57 16 17 O -0.38 -3.43 11.65 -35.23 -0.41 -3.84 16 18 C 0.05 0.40 7.10 37.93 0.27 0.67 16 19 C -0.06 -0.67 9.22 -39.18 -0.36 -1.03 16 20 C 0.08 1.51 6.58 -2.53 -0.02 1.50 16 21 C 0.18 3.28 3.14 -65.78 -0.21 3.08 16 22 H 0.07 1.28 8.02 -51.93 -0.42 0.86 16 23 N -0.71 -16.59 5.26 -51.35 -0.27 -16.86 16 24 C -0.25 -6.58 9.97 -15.06 -0.15 -6.73 16 25 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 27 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 28 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.62 8.06 -51.93 -0.42 0.20 16 35 H 0.08 0.79 6.30 -51.93 -0.33 0.47 16 36 H 0.07 0.75 6.79 -51.93 -0.35 0.39 16 37 H 0.16 1.48 2.78 -56.80 -0.16 1.32 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.73 7.70 -52.49 -0.40 0.33 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.52 7.34 -51.93 -0.38 0.13 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.46 6.87 -51.93 -0.36 0.11 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.13 1.65 7.58 -52.48 -0.40 1.25 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 49 H 0.39 9.60 7.73 -40.82 -0.32 9.28 16 50 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -32.04 396.23 -10.16 -42.21 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.70 Total: 7.76 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.96 Total: -4.81 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.13 Total: -53.34 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.32 Total: -14.68 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.04 -10.16 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082605935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.235 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds