Wall clock time and date at job start Wed Apr 1 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.63980 * 2 1 4 4 C 1.54321 * 110.72618 * 236.65658 * 2 1 3 5 5 N 1.47017 * 107.27556 * 219.44209 * 4 2 1 6 6 C 1.34768 * 125.65231 * 178.89129 * 5 4 2 7 7 O 1.21552 * 120.00325 * 174.87303 * 6 5 4 8 8 C 1.47846 * 119.99779 * 354.87733 * 6 5 4 9 9 C 1.39599 * 120.14631 * 8.04096 * 8 6 5 10 10 C 1.37937 * 119.85411 * 179.97438 * 9 8 6 11 11 C 1.38378 * 120.14771 * 359.97229 * 10 9 8 12 12 C 1.38341 * 120.28976 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.92457 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.45769 * 179.30300 * 13 12 11 15 15 C 1.54509 * 110.51148 * 301.90198 * 13 12 11 16 16 C 1.54480 * 104.06161 * 118.64648 * 15 13 12 17 17 O 1.44416 * 104.80368 * 23.98002 * 16 15 13 18 18 C 1.44645 * 105.36967 * 319.56722 * 17 16 15 19 19 C 1.37976 * 120.14495 * 359.74360 * 12 11 10 20 20 C 1.47424 * 108.70156 * 358.94061 * 5 4 2 21 21 C 1.54913 * 104.83245 * 24.12970 * 20 5 4 22 22 H 1.08991 * 111.00645 * 81.06779 * 21 20 5 23 23 N 1.46505 * 111.03638 * 204.90185 * 21 20 5 24 24 C 1.36933 * 120.00172 * 270.39409 * 23 21 20 25 25 H 1.08003 * 119.99619 * 0.02562 * 24 23 21 26 26 C 1.38806 * 120.00280 * 180.02562 * 24 23 21 27 27 N 1.31626 * 119.99955 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00371 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47236 * 89.99325 * 28 26 24 30 30 H 1.48494 * 109.47360 * 209.99901 * 28 26 24 31 31 H 1.48501 * 109.46629 * 329.99652 * 28 26 24 32 32 H 1.09000 * 109.47450 * 296.86165 * 1 2 3 33 33 H 1.08992 * 109.47094 * 56.86947 * 1 2 3 34 34 H 1.09004 * 109.46574 * 176.86385 * 1 2 3 35 35 H 1.09000 * 109.88132 * 338.86320 * 4 2 1 36 36 H 1.09002 * 109.87864 * 99.87054 * 4 2 1 37 37 H 1.07996 * 120.07185 * 359.94881 * 9 8 6 38 38 H 1.07998 * 119.92403 * 179.97438 * 10 9 8 39 39 H 1.07993 * 119.85790 * 179.97438 * 11 10 9 40 40 H 1.09002 * 110.51219 * 237.29056 * 15 13 12 41 41 H 1.08997 * 110.51415 * 0.02562 * 15 13 12 42 42 H 1.09001 * 110.37127 * 142.81116 * 16 15 13 43 43 H 1.09001 * 110.37184 * 265.14612 * 16 15 13 44 44 H 1.09003 * 110.33557 * 281.59302 * 18 17 16 45 45 H 1.08999 * 110.51083 * 159.18834 * 18 17 16 46 46 H 1.08004 * 120.07318 * 180.25445 * 19 12 11 47 47 H 1.09000 * 110.36980 * 265.28802 * 20 5 4 48 48 H 1.09007 * 110.37094 * 142.96340 * 20 5 4 49 49 H 0.97002 * 120.00226 * 90.39075 * 23 21 20 50 50 H 0.97004 * 119.99776 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2446 -1.5519 -0.7361 6 6 3.9915 -2.3873 -1.4848 7 8 4.9932 -2.8921 -1.0165 8 6 3.5925 -2.6897 -2.8760 9 6 2.5438 -1.9878 -3.4729 10 6 2.1769 -2.2745 -4.7713 11 6 2.8463 -3.2550 -5.4822 12 6 3.8865 -3.9543 -4.8966 13 6 4.6094 -5.0208 -5.6783 14 1 5.4042 -5.4615 -5.0764 15 6 3.6206 -6.1101 -6.1503 16 6 3.7104 -6.0562 -7.6915 17 8 5.0099 -5.4889 -7.9658 18 6 5.1829 -4.4368 -6.9883 19 6 4.2666 -3.6740 -3.6002 20 6 3.4633 -1.2484 0.6898 21 6 2.0789 -0.7932 1.2153 22 1 1.4452 -1.6509 1.4405 23 7 2.2205 0.0738 2.3877 24 6 2.2510 -0.4720 3.6432 25 1 2.1712 -1.5417 3.7691 26 6 2.3846 0.3495 4.7541 27 7 2.4824 1.6531 4.6007 28 14 2.4270 -0.3951 6.4668 29 1 3.8311 -0.7059 6.8368 30 1 1.8607 0.5718 7.4411 31 1 1.6228 -1.6434 6.4838 32 1 -0.3634 0.4643 0.9168 33 1 -0.3633 0.5616 -0.8605 34 1 -0.3632 -1.0262 -0.0562 35 1 1.3131 -1.4787 -1.5749 36 1 2.3716 -0.1060 -1.9985 37 1 2.0206 -1.2224 -2.9191 38 1 1.3655 -1.7325 -5.2340 39 1 2.5549 -3.4760 -6.4984 40 1 3.9279 -7.0896 -5.7838 41 1 2.6087 -5.8771 -5.8187 42 1 3.6382 -7.0596 -8.1111 43 1 2.9247 -5.4177 -8.0953 44 1 4.6243 -3.5490 -7.2845 45 1 6.2395 -4.1983 -6.8669 46 1 5.0815 -4.2178 -3.1456 47 1 4.1931 -0.4463 0.7994 48 1 3.7961 -2.1403 1.2210 49 1 2.2926 1.0345 2.2747 50 1 2.5762 2.2271 5.3770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082605935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:39 Heat of formation + Delta-G solvation = -41.996391 kcal Electronic energy + Delta-G solvation = -29791.015681 eV Core-core repulsion = 25783.085190 eV Total energy + Delta-G solvation = -4007.930491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.78873 -40.79852 -39.35613 -38.71322 -36.10268 -34.61753 -33.78913 -32.55598 -32.12293 -31.24902 -29.82178 -28.78762 -27.64264 -26.13421 -24.91448 -23.93118 -23.41788 -22.87560 -21.67801 -21.43231 -20.48838 -19.25009 -18.20739 -17.70657 -17.48026 -17.28681 -16.73811 -16.52921 -16.32813 -16.19049 -15.66235 -15.58283 -15.32634 -14.95135 -14.70477 -14.63654 -14.41063 -14.23058 -14.11153 -13.85438 -13.70817 -13.44841 -13.06035 -12.96410 -12.90584 -12.81535 -12.53061 -12.48716 -12.28072 -12.20870 -12.14949 -12.06294 -11.91038 -11.68554 -11.55348 -11.27799 -11.07478 -10.91485 -10.75141 -10.04827 -9.72739 -9.69866 -9.08326 -7.98754 -5.28285 -0.16955 0.34828 1.45798 1.47610 1.55171 1.75032 1.85400 2.53505 2.78092 3.01014 3.29145 3.40326 3.46716 3.62413 3.70411 3.79739 3.91728 3.97030 4.00367 4.11441 4.14652 4.15475 4.26275 4.30110 4.32595 4.37415 4.41927 4.49867 4.56777 4.60031 4.72777 4.81420 4.85472 4.86961 4.88611 4.91187 5.00732 5.05017 5.05112 5.09442 5.13111 5.19650 5.35126 5.37250 5.40472 5.49267 5.52065 5.54247 5.82132 5.92925 6.22857 6.44965 7.00331 7.30504 8.01501 8.26059 9.23615 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.002046 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.371612 B =13684.948812 C =14311.885022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 H 0.082 0.918 4 C 0.099 3.901 5 N -0.605 5.605 6 C 0.558 3.442 7 O -0.594 6.594 8 C -0.143 4.143 9 C -0.122 4.122 10 C -0.114 4.114 11 C -0.086 4.086 12 C -0.084 4.084 13 C -0.083 4.083 14 H 0.084 0.916 15 C -0.144 4.144 16 C 0.041 3.959 17 O -0.399 6.399 18 C 0.053 3.947 19 C -0.075 4.075 20 C 0.090 3.910 21 C 0.173 3.827 22 H 0.063 0.937 23 N -0.718 5.718 24 C -0.246 4.246 25 H 0.072 0.928 26 C -0.068 4.068 27 N -0.963 5.963 28 Si 0.968 3.032 29 H -0.292 1.292 30 H -0.292 1.292 31 H -0.270 1.270 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.176 0.824 38 H 0.167 0.833 39 H 0.152 0.848 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.047 0.953 48 H 0.044 0.956 49 H 0.378 0.622 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -10.213 -29.082 31.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 H 0.100 0.900 4 C -0.022 4.022 5 N -0.337 5.337 6 C 0.350 3.650 7 O -0.477 6.477 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.132 4.132 11 C -0.104 4.104 12 C -0.084 4.084 13 C -0.102 4.102 14 H 0.102 0.898 15 C -0.182 4.182 16 C -0.035 4.035 17 O -0.319 6.319 18 C -0.024 4.024 19 C -0.094 4.094 20 C -0.036 4.036 21 C 0.062 3.938 22 H 0.081 0.919 23 N -0.357 5.357 24 C -0.377 4.377 25 H 0.090 0.910 26 C -0.261 4.261 27 N -0.613 5.613 28 Si 0.797 3.203 29 H -0.219 1.219 30 H -0.219 1.219 31 H -0.194 1.194 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.193 0.807 38 H 0.184 0.816 39 H 0.170 0.830 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.131 0.869 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.211 0.789 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.737 -10.694 -28.872 31.151 hybrid contribution 0.821 0.109 2.034 2.196 sum -3.916 -10.585 -26.838 29.115 Atomic orbital electron populations 1.21652 0.91815 1.02694 1.02529 1.22503 0.98057 0.99241 0.92781 0.89951 1.22895 0.87223 0.95070 0.97031 1.48389 1.30514 1.43586 1.11204 1.18694 0.82060 0.77832 0.86457 1.90727 1.27728 1.54588 1.74654 1.19746 1.00879 1.01555 0.92406 1.22973 0.94776 0.99376 0.96846 1.21545 1.00565 0.97702 0.93358 1.21534 0.93691 0.94354 1.00806 1.19665 0.97590 0.98082 0.93051 1.21517 0.97905 0.94148 0.96631 0.89779 1.23066 1.00178 0.98821 0.96144 1.23631 0.85265 1.00219 0.94413 1.89147 1.36677 1.51115 1.54922 1.23650 1.02312 0.90825 0.85600 1.21126 0.98270 0.95858 0.94169 1.23064 1.01366 0.99014 0.80154 1.21528 0.91691 0.93682 0.86942 0.91868 1.42366 1.86870 1.05532 1.00925 1.19559 1.41201 0.92278 0.84698 0.90958 1.25495 1.03263 0.95869 1.01436 1.69793 1.58325 1.03286 1.29857 0.85223 0.77384 0.77464 0.80183 1.21929 1.21887 1.19447 0.93854 0.89477 0.91712 0.87502 0.87752 0.80717 0.81594 0.83043 0.90189 0.89110 0.87955 0.90497 0.90568 0.88845 0.86879 0.93453 0.93783 0.78876 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.16 71.98 0.66 -2.20 16 2 C -0.11 -2.84 3.18 -9.61 -0.03 -2.87 16 3 H 0.08 2.32 8.00 -2.39 -0.02 2.30 16 4 C 0.10 2.14 4.47 86.73 0.39 2.53 16 5 N -0.61 -19.16 3.33 -825.71 -2.75 -21.90 16 6 C 0.56 19.02 7.81 86.79 0.68 19.70 16 7 O -0.59 -25.68 16.67 -3.88 -0.06 -25.74 16 8 C -0.14 -3.60 5.87 -20.09 -0.12 -3.71 16 9 C -0.12 -2.06 8.60 22.53 0.19 -1.86 16 10 C -0.11 -1.28 10.03 22.23 0.22 -1.06 16 11 C -0.09 -1.00 8.11 22.33 0.18 -0.81 16 12 C -0.08 -1.37 4.77 -19.90 -0.10 -1.46 16 13 C -0.08 -1.17 3.33 -10.53 -0.04 -1.21 16 14 H 0.08 1.34 7.93 -2.38 -0.02 1.32 16 15 C -0.14 -1.54 6.50 31.61 0.21 -1.34 16 16 C 0.04 0.41 7.64 72.49 0.55 0.96 16 17 O -0.40 -6.49 11.65 -148.98 -1.74 -8.22 16 18 C 0.05 0.71 7.10 72.48 0.51 1.23 16 19 C -0.08 -1.77 9.22 22.53 0.21 -1.56 16 20 C 0.09 3.54 6.58 86.86 0.57 4.11 16 21 C 0.17 6.49 3.14 46.38 0.15 6.64 16 22 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 23 N -0.72 -34.64 5.26 -316.37 -1.66 -36.30 16 24 C -0.25 -13.37 9.97 84.03 0.84 -12.53 16 25 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 26 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 27 N -0.96 -57.52 13.06 21.65 0.28 -57.24 16 28 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 30 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 31 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.29 8.06 -2.38 -0.02 1.27 16 35 H 0.11 1.74 6.30 -2.39 -0.02 1.73 16 36 H 0.10 1.70 6.79 -2.39 -0.02 1.68 16 37 H 0.18 2.34 2.78 -6.96 -0.02 2.32 16 38 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 39 H 0.15 0.93 7.70 -2.91 -0.02 0.90 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.83 7.34 -2.39 -0.02 0.81 16 42 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.85 6.87 -2.39 -0.02 0.83 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.11 3.04 7.58 -2.91 -0.02 3.02 16 47 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.04 1.93 8.09 -2.38 -0.02 1.91 16 49 H 0.38 19.39 7.73 -92.71 -0.72 18.67 16 50 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -74.47 396.23 1.87 -72.60 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.23 Total: 27.65 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.55 Total: 1.18 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -4.13 Total: -115.44 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.80 Total: -33.96 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -74.47 1.87 -72.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082605935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.601 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds