Wall clock time and date at job start Wed Apr 1 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00189 * 2 1 4 4 C 1.38752 * 120.05435 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94384 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05434 * 0.02797 * 5 4 3 7 7 C 1.38240 * 120.10831 * 359.69751 * 6 5 4 8 8 C 1.38162 * 120.06174 * 0.55455 * 7 6 5 9 9 C 1.50694 * 120.03428 * 179.74729 * 8 7 6 10 10 H 1.09003 * 115.56710 * 154.03102 * 9 8 7 11 11 C 1.53074 * 117.49249 * 8.32311 * 9 8 7 12 12 C 1.52994 * 59.98556 * 252.51312 * 11 9 8 13 13 H 1.09001 * 117.49427 * 107.49887 * 12 11 9 14 14 C 1.50698 * 117.49776 * 252.49512 * 12 11 9 15 15 O 1.21282 * 119.99910 * 68.75408 * 14 12 11 16 16 N 1.34775 * 120.00280 * 248.74511 * 14 12 11 17 17 C 1.47018 * 125.64993 * 180.02562 * 16 14 12 18 18 C 1.54325 * 107.40412 * 178.90064 * 17 16 14 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 20 20 C 1.52995 * 110.72304 * 219.52316 * 18 17 16 21 21 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 22 22 H 1.09000 * 110.89538 * 277.26533 * 21 18 17 23 23 N 1.46502 * 111.07038 * 153.48335 * 21 18 17 24 24 C 1.36935 * 119.99899 * 161.20915 * 23 21 18 25 25 H 1.08003 * 120.00376 * 0.02562 * 24 23 21 26 26 C 1.38815 * 120.00278 * 180.02562 * 24 23 21 27 27 N 1.31617 * 119.99732 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 120.00230 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47091 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.47309 * 120.00297 * 28 26 24 31 31 H 1.48503 * 109.46956 * 240.00178 * 28 26 24 32 32 C 1.47426 * 125.64489 * 0.04405 * 16 14 12 33 33 H 1.09000 * 109.47238 * 300.00364 * 1 2 3 34 34 H 1.09005 * 109.46955 * 59.99951 * 1 2 3 35 35 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 36 36 H 1.08004 * 120.02978 * 0.04814 * 4 3 2 37 37 H 1.08001 * 119.97044 * 179.97438 * 5 4 3 38 38 H 1.08002 * 119.94055 * 179.97438 * 6 5 4 39 39 H 1.08001 * 119.96907 * 180.27597 * 7 6 5 40 40 H 1.09005 * 117.51698 * 145.03458 * 11 9 8 41 41 H 1.09001 * 117.49505 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.88241 * 298.39592 * 17 16 14 43 43 H 1.09000 * 109.88049 * 59.40721 * 17 16 14 44 44 H 1.08999 * 109.47083 * 58.54334 * 20 18 17 45 45 H 1.09002 * 109.47293 * 178.54343 * 20 18 17 46 46 H 1.09000 * 109.47062 * 298.54438 * 20 18 17 47 47 H 0.96999 * 120.00092 * 341.21066 * 23 21 18 48 48 H 0.96994 * 120.00134 * 179.97438 * 27 26 24 49 49 H 1.08999 * 110.36956 * 322.93474 * 32 16 14 50 50 H 1.09003 * 110.36599 * 85.25378 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0017 7 6 4.0560 2.5170 0.0046 8 6 3.4312 1.2847 -0.0001 9 6 4.2537 0.0220 0.0010 10 1 3.7680 -0.8554 0.4280 11 6 5.7643 0.1629 0.2039 12 6 5.2079 -0.2005 -1.1741 13 1 5.2404 0.5662 -1.9482 14 6 5.4042 -1.6160 -1.6526 15 8 4.8147 -2.5267 -1.1103 16 7 6.2348 -1.8699 -2.6832 17 6 6.5171 -3.1971 -3.2493 18 6 7.4981 -2.9987 -4.4240 19 1 8.5258 -3.1631 -4.1002 20 6 7.1414 -3.9237 -5.5893 21 6 7.2759 -1.5102 -4.8113 22 1 6.4101 -1.4036 -5.4648 23 7 8.4743 -0.9439 -5.4356 24 6 8.3809 0.1976 -6.1862 25 1 7.4239 0.6807 -6.3178 26 6 9.5162 0.7339 -6.7781 27 7 10.6823 0.1450 -6.6183 28 14 9.3889 2.2914 -7.8015 29 1 7.9780 2.7538 -7.8257 30 1 10.2453 3.3475 -7.2044 31 1 9.8424 2.0113 -9.1876 32 6 7.0110 -0.8628 -3.4293 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 0.2128 2.3203 -0.0002 37 1 1.3341 4.5113 -0.0019 38 1 3.7923 4.6380 -0.0025 39 1 5.1344 2.5751 0.0086 40 1 6.2725 -0.6218 0.7645 41 1 6.1626 1.1688 0.3369 42 1 6.9712 -3.8347 -2.4907 43 1 5.5937 -3.6502 -3.6099 44 1 6.1218 -3.7196 -5.9162 45 1 7.8299 -3.7487 -6.4160 46 1 7.2183 -4.9618 -5.2658 47 1 9.3338 -1.3775 -5.3171 48 1 11.4756 0.5195 -7.0322 49 1 6.4321 0.0536 -3.5442 50 1 7.9526 -0.6563 -2.9205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082793441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:24 Heat of formation + Delta-G solvation = -6.592739 kcal Electronic energy + Delta-G solvation = -29924.029863 eV Core-core repulsion = 25917.634590 eV Total energy + Delta-G solvation = -4006.395273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66609 -39.82587 -38.18977 -37.47209 -36.06379 -34.06068 -32.47451 -30.97685 -30.70553 -30.31879 -27.53777 -27.47754 -26.76378 -24.25795 -24.00137 -23.40131 -22.16936 -21.35727 -20.57457 -19.86434 -18.74621 -18.38374 -17.20099 -17.14342 -16.29047 -16.05983 -15.91849 -15.68741 -15.39059 -14.70374 -14.56557 -14.24187 -14.11594 -13.82454 -13.61444 -13.13385 -13.08581 -13.00223 -12.93248 -12.64982 -12.53908 -12.22097 -12.15831 -11.78202 -11.65816 -11.53737 -11.33849 -11.12234 -11.07231 -11.03262 -10.84135 -10.67199 -10.60285 -10.45854 -10.22896 -9.91754 -9.80931 -9.61752 -9.03319 -8.96592 -8.30999 -8.24347 -7.09955 -5.87051 -3.17630 1.06319 1.24435 2.71170 3.09374 3.18651 3.37568 3.44088 3.45829 3.50564 4.00411 4.36604 4.50533 4.57200 4.66986 4.80799 4.83513 4.87382 4.90020 4.91767 5.02664 5.13374 5.19044 5.19954 5.24683 5.26186 5.29374 5.40773 5.53694 5.63751 5.65588 5.77545 5.79922 5.83317 5.92226 5.95560 5.99178 6.03028 6.13403 6.22111 6.26235 6.29295 6.38390 6.41160 6.47371 6.56499 6.57233 6.63371 6.87862 7.20462 7.62297 7.83733 8.30275 8.43175 9.42705 9.96460 10.31653 11.34989 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.002865 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.300989 B = 9772.067556 C =11595.575111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.137 3.863 4 C -0.209 4.209 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.081 4.081 8 C -0.082 4.082 9 C -0.073 4.073 10 H 0.128 0.872 11 C -0.145 4.145 12 C -0.170 4.170 13 H 0.125 0.875 14 C 0.556 3.444 15 O -0.552 6.552 16 N -0.609 5.609 17 C 0.117 3.883 18 C -0.113 4.113 19 H 0.084 0.916 20 C -0.134 4.134 21 C 0.177 3.823 22 H 0.064 0.936 23 N -0.711 5.711 24 C -0.246 4.246 25 H 0.072 0.928 26 C -0.008 4.008 27 N -0.929 5.929 28 Si 0.907 3.093 29 H -0.279 1.279 30 H -0.291 1.291 31 H -0.291 1.291 32 C 0.074 3.926 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.387 0.613 48 H 0.256 0.744 49 H 0.069 0.931 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 1.736 14.368 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.091 3.909 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.172 4.172 7 C -0.099 4.099 8 C -0.083 4.083 9 C -0.092 4.092 10 H 0.146 0.854 11 C -0.183 4.183 12 C -0.191 4.191 13 H 0.143 0.857 14 C 0.345 3.655 15 O -0.431 6.431 16 N -0.342 5.342 17 C -0.006 4.006 18 C -0.133 4.133 19 H 0.103 0.897 20 C -0.191 4.191 21 C 0.064 3.936 22 H 0.082 0.918 23 N -0.351 5.351 24 C -0.377 4.377 25 H 0.090 0.910 26 C -0.205 4.205 27 N -0.576 5.576 28 Si 0.737 3.263 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.218 1.218 32 C -0.051 4.051 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.222 0.778 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.063 1.218 14.575 22.474 hybrid contribution 0.079 1.071 -0.642 1.252 sum -16.985 2.289 13.933 22.087 Atomic orbital electron populations 1.23064 0.78604 1.04038 1.01104 1.86161 1.21089 1.26517 1.88303 1.18803 0.91551 0.84395 0.96151 1.21208 0.99950 0.92317 1.09295 1.20933 0.94740 0.96885 0.97749 1.21044 0.93879 0.98391 1.03900 1.20968 1.00344 0.90934 0.97632 1.18497 0.90028 0.94077 1.05715 1.20842 0.90631 0.97161 1.00526 0.85373 1.23129 0.95626 1.03380 0.96117 1.22311 1.06964 0.96215 0.93587 0.85734 1.19219 0.78132 0.89368 0.78798 1.90658 1.48556 1.46702 1.57223 1.48421 1.43783 1.09679 1.32284 1.21956 0.98750 0.84679 0.95205 1.22515 0.99067 0.97284 0.94412 0.89737 1.21654 1.01721 0.97855 0.97894 1.21417 0.92073 0.89323 0.90757 0.91789 1.42293 1.04661 1.29627 1.58478 1.19275 0.94120 1.00985 1.23338 0.90964 1.24756 0.95429 0.99326 1.00968 1.69664 0.98359 1.41087 1.48540 0.86133 0.77321 0.82941 0.79867 1.20462 1.21774 1.21791 1.23500 0.95017 0.91658 0.94957 0.92798 0.92698 0.88186 0.85482 0.85879 0.85732 0.84977 0.87840 0.87469 0.92061 0.91714 0.92848 0.91424 0.93181 0.77848 0.93396 0.91301 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.75 9.68 -19.42 -0.19 -3.94 16 3 C 0.14 1.64 6.66 -39.22 -0.26 1.38 16 4 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 5 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 6 C -0.15 -1.46 10.04 -39.56 -0.40 -1.86 16 7 C -0.08 -0.86 9.30 -39.61 -0.37 -1.23 16 8 C -0.08 -1.01 5.62 -104.48 -0.59 -1.60 16 9 C -0.07 -0.96 5.26 -91.74 -0.48 -1.45 16 10 H 0.13 1.92 7.29 -51.93 -0.38 1.54 16 11 C -0.15 -1.70 9.57 -26.70 -0.26 -1.96 16 12 C -0.17 -2.39 5.17 -91.78 -0.47 -2.87 16 13 H 0.12 1.71 7.07 -51.93 -0.37 1.34 16 14 C 0.56 9.45 7.63 -10.99 -0.08 9.36 16 15 O -0.55 -10.84 16.58 5.56 0.09 -10.75 16 16 N -0.61 -10.09 3.33 -170.53 -0.57 -10.66 16 17 C 0.12 1.82 6.46 -3.07 -0.02 1.80 16 18 C -0.11 -1.79 3.19 -88.65 -0.28 -2.07 16 19 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 20 C -0.13 -1.92 9.14 37.15 0.34 -1.58 16 21 C 0.18 3.30 3.14 -65.65 -0.21 3.10 16 22 H 0.06 1.24 8.03 -51.93 -0.42 0.83 16 23 N -0.71 -16.50 5.28 -51.23 -0.27 -16.77 16 24 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 25 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 27 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 28 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 32 C 0.07 1.29 6.39 -2.54 -0.02 1.27 16 33 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 34 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.13 0.96 6.30 -52.48 -0.33 0.63 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.20 6.02 -52.49 -0.32 0.89 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.11 1.02 6.17 -51.93 -0.32 0.70 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16 44 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.39 9.60 7.72 -40.82 -0.32 9.28 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.07 1.16 7.01 -51.93 -0.36 0.80 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -31.59 406.72 -9.98 -41.57 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.78 Total: 10.97 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -3.10 Total: -6.97 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.11 Total: -53.48 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.10 Total: -14.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.59 -9.98 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082793441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.982 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds