Wall clock time and date at job start Wed Apr 1 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00189 * 2 1 4 4 C 1.38752 * 120.05435 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94384 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05434 * 0.02797 * 5 4 3 7 7 C 1.38240 * 120.10831 * 359.69751 * 6 5 4 8 8 C 1.38162 * 120.06174 * 0.55455 * 7 6 5 9 9 C 1.50694 * 120.03428 * 179.74729 * 8 7 6 10 10 H 1.09003 * 115.56710 * 154.03102 * 9 8 7 11 11 C 1.53074 * 117.49249 * 8.32311 * 9 8 7 12 12 C 1.52994 * 59.98556 * 252.51312 * 11 9 8 13 13 H 1.09001 * 117.49427 * 107.49887 * 12 11 9 14 14 C 1.50698 * 117.49776 * 252.49512 * 12 11 9 15 15 O 1.21282 * 119.99910 * 68.75408 * 14 12 11 16 16 N 1.34775 * 120.00280 * 248.74511 * 14 12 11 17 17 C 1.47018 * 125.64993 * 180.02562 * 16 14 12 18 18 C 1.54325 * 107.40412 * 178.90064 * 17 16 14 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 20 20 C 1.52995 * 110.72304 * 219.52316 * 18 17 16 21 21 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 22 22 H 1.09000 * 110.89538 * 277.26533 * 21 18 17 23 23 N 1.46502 * 111.07038 * 153.48335 * 21 18 17 24 24 C 1.36935 * 119.99899 * 161.20915 * 23 21 18 25 25 H 1.08003 * 120.00376 * 0.02562 * 24 23 21 26 26 C 1.38815 * 120.00278 * 180.02562 * 24 23 21 27 27 N 1.31617 * 119.99732 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 120.00230 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47091 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.47309 * 120.00297 * 28 26 24 31 31 H 1.48503 * 109.46956 * 240.00178 * 28 26 24 32 32 C 1.47426 * 125.64489 * 0.04405 * 16 14 12 33 33 H 1.09000 * 109.47238 * 300.00364 * 1 2 3 34 34 H 1.09005 * 109.46955 * 59.99951 * 1 2 3 35 35 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 36 36 H 1.08004 * 120.02978 * 0.04814 * 4 3 2 37 37 H 1.08001 * 119.97044 * 179.97438 * 5 4 3 38 38 H 1.08002 * 119.94055 * 179.97438 * 6 5 4 39 39 H 1.08001 * 119.96907 * 180.27597 * 7 6 5 40 40 H 1.09005 * 117.51698 * 145.03458 * 11 9 8 41 41 H 1.09001 * 117.49505 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.88241 * 298.39592 * 17 16 14 43 43 H 1.09000 * 109.88049 * 59.40721 * 17 16 14 44 44 H 1.08999 * 109.47083 * 58.54334 * 20 18 17 45 45 H 1.09002 * 109.47293 * 178.54343 * 20 18 17 46 46 H 1.09000 * 109.47062 * 298.54438 * 20 18 17 47 47 H 0.96999 * 120.00092 * 341.21066 * 23 21 18 48 48 H 0.96994 * 120.00134 * 179.97438 * 27 26 24 49 49 H 1.08999 * 110.36956 * 322.93474 * 32 16 14 50 50 H 1.09003 * 110.36599 * 85.25378 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0017 7 6 4.0560 2.5170 0.0046 8 6 3.4312 1.2847 -0.0001 9 6 4.2537 0.0220 0.0010 10 1 3.7680 -0.8554 0.4280 11 6 5.7643 0.1629 0.2039 12 6 5.2079 -0.2005 -1.1741 13 1 5.2404 0.5662 -1.9482 14 6 5.4042 -1.6160 -1.6526 15 8 4.8147 -2.5267 -1.1103 16 7 6.2348 -1.8699 -2.6832 17 6 6.5171 -3.1971 -3.2493 18 6 7.4981 -2.9987 -4.4240 19 1 8.5258 -3.1631 -4.1002 20 6 7.1414 -3.9237 -5.5893 21 6 7.2759 -1.5102 -4.8113 22 1 6.4101 -1.4036 -5.4648 23 7 8.4743 -0.9439 -5.4356 24 6 8.3809 0.1976 -6.1862 25 1 7.4239 0.6807 -6.3178 26 6 9.5162 0.7339 -6.7781 27 7 10.6823 0.1450 -6.6183 28 14 9.3889 2.2914 -7.8015 29 1 7.9780 2.7538 -7.8257 30 1 10.2453 3.3475 -7.2044 31 1 9.8424 2.0113 -9.1876 32 6 7.0110 -0.8628 -3.4293 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 0.2128 2.3203 -0.0002 37 1 1.3341 4.5113 -0.0019 38 1 3.7923 4.6380 -0.0025 39 1 5.1344 2.5751 0.0086 40 1 6.2725 -0.6218 0.7645 41 1 6.1626 1.1688 0.3369 42 1 6.9712 -3.8347 -2.4907 43 1 5.5937 -3.6502 -3.6099 44 1 6.1218 -3.7196 -5.9162 45 1 7.8299 -3.7487 -6.4160 46 1 7.2183 -4.9618 -5.2658 47 1 9.3338 -1.3775 -5.3171 48 1 11.4756 0.5195 -7.0322 49 1 6.4321 0.0536 -3.5442 50 1 7.9526 -0.6563 -2.9205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082793441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:23 Heat of formation + Delta-G solvation = -24.037185 kcal Electronic energy + Delta-G solvation = -29924.786311 eV Core-core repulsion = 25917.634590 eV Total energy + Delta-G solvation = -4007.151721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62979 -40.97657 -39.38029 -38.46944 -37.12396 -35.85226 -33.93584 -32.52374 -31.74092 -31.04895 -29.13252 -28.23523 -27.91582 -25.92668 -25.02718 -24.59985 -22.96915 -22.78005 -21.52516 -21.25603 -20.02723 -19.20063 -19.08438 -18.30315 -17.42064 -17.25908 -16.74314 -16.59074 -16.58730 -16.26038 -15.60273 -15.37044 -15.32969 -15.09458 -14.74895 -14.53344 -14.49726 -14.34690 -14.00028 -13.74531 -13.71212 -13.16943 -13.09115 -13.01822 -12.89794 -12.86534 -12.84762 -12.33337 -12.22104 -12.11837 -12.01838 -11.99690 -11.89614 -11.74330 -11.66408 -11.43889 -11.37338 -11.05240 -10.88079 -9.75801 -9.69696 -9.05424 -9.02995 -7.93098 -5.22724 0.29262 0.48355 1.42781 1.50691 1.52000 1.60963 1.90731 2.40687 2.57566 2.63863 3.02972 3.29773 3.38895 3.56398 3.70590 3.76154 3.83230 3.89023 3.94258 4.06980 4.10850 4.16349 4.18124 4.29237 4.36849 4.37220 4.44761 4.46750 4.52921 4.57293 4.65025 4.67403 4.70131 4.73937 4.84025 4.87752 4.93734 5.07089 5.08282 5.10741 5.12003 5.22558 5.34158 5.39216 5.44670 5.52690 5.56871 5.61075 5.87095 6.27786 6.46542 6.47380 7.07927 7.35921 8.06368 8.31611 9.29863 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.002865 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.300989 B = 9772.067556 C =11595.575111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.087 4.087 8 C -0.107 4.107 9 C -0.068 4.068 10 H 0.103 0.897 11 C -0.126 4.126 12 C -0.184 4.184 13 H 0.129 0.871 14 C 0.553 3.447 15 O -0.583 6.583 16 N -0.609 5.609 17 C 0.118 3.882 18 C -0.102 4.102 19 H 0.081 0.919 20 C -0.129 4.129 21 C 0.171 3.829 22 H 0.060 0.940 23 N -0.719 5.719 24 C -0.239 4.239 25 H 0.078 0.922 26 C -0.068 4.068 27 N -0.965 5.965 28 Si 0.967 3.033 29 H -0.266 1.266 30 H -0.294 1.294 31 H -0.297 1.297 32 C 0.089 3.911 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.377 0.623 48 H 0.251 0.749 49 H 0.073 0.927 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 3.288 14.882 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.070 3.930 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.104 4.104 8 C -0.108 4.108 9 C -0.087 4.087 10 H 0.121 0.879 11 C -0.163 4.163 12 C -0.204 4.204 13 H 0.147 0.853 14 C 0.343 3.657 15 O -0.464 6.464 16 N -0.341 5.341 17 C -0.005 4.005 18 C -0.121 4.121 19 H 0.100 0.900 20 C -0.186 4.186 21 C 0.060 3.940 22 H 0.078 0.922 23 N -0.358 5.358 24 C -0.371 4.371 25 H 0.095 0.905 26 C -0.260 4.260 27 N -0.616 5.616 28 Si 0.797 3.203 29 H -0.190 1.190 30 H -0.221 1.221 31 H -0.224 1.224 32 C -0.037 4.037 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.120 0.880 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.210 0.790 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.535 2.764 15.102 24.068 hybrid contribution 0.399 0.539 -0.745 1.003 sum -18.136 3.303 14.357 23.365 Atomic orbital electron populations 1.23305 0.76737 1.05170 1.02300 1.86117 1.23248 1.27243 1.88557 1.19094 0.91888 0.85056 0.96987 1.21493 1.01027 0.91921 1.08641 1.21334 0.95004 0.97613 0.96273 1.21384 0.94272 0.98932 1.03064 1.21167 1.01152 0.90701 0.97416 1.18599 0.90391 0.94115 1.07646 1.20674 0.91385 0.97067 0.99588 0.87892 1.23264 0.94726 1.04643 0.93695 1.22290 1.09104 0.94415 0.94631 0.85295 1.19708 0.77372 0.90297 0.78307 1.90638 1.49687 1.47962 1.58146 1.48453 1.43582 1.09839 1.32230 1.22002 0.98868 0.84487 0.95135 1.22427 0.99086 0.95566 0.95059 0.90029 1.21617 1.01450 0.98938 0.96613 1.21540 0.90252 0.91230 0.90939 0.92245 1.42370 1.05537 1.29162 1.58734 1.19608 0.94051 1.01234 1.22217 0.90452 1.25471 0.95348 1.02340 1.02879 1.69803 0.98853 1.42691 1.50208 0.85172 0.77683 0.79625 0.77863 1.19031 1.22143 1.22418 1.23174 0.94870 0.91765 0.93861 0.91189 0.91798 0.87239 0.83467 0.83101 0.83502 0.83783 0.87969 0.84847 0.91343 0.91198 0.92344 0.93062 0.90705 0.78986 0.94018 0.90851 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.32 9.68 -92.40 -0.89 -9.21 16 3 C 0.12 2.71 6.66 22.51 0.15 2.86 16 4 C -0.21 -3.81 9.04 22.37 0.20 -3.61 16 5 C -0.08 -1.30 10.04 22.26 0.22 -1.08 16 6 C -0.16 -2.60 10.04 22.28 0.22 -2.38 16 7 C -0.09 -1.69 9.30 22.25 0.21 -1.48 16 8 C -0.11 -2.57 5.62 -19.77 -0.11 -2.68 16 9 C -0.07 -1.82 5.26 -11.52 -0.06 -1.88 16 10 H 0.10 3.24 7.29 -2.39 -0.02 3.22 16 11 C -0.13 -2.84 9.57 30.62 0.29 -2.55 16 12 C -0.18 -5.11 5.17 -11.54 -0.06 -5.17 16 13 H 0.13 3.45 7.07 -2.39 -0.02 3.43 16 14 C 0.55 18.76 7.63 87.66 0.67 19.43 16 15 O -0.58 -23.17 16.58 -3.04 -0.05 -23.22 16 16 N -0.61 -19.86 3.33 -811.82 -2.70 -22.56 16 17 C 0.12 3.55 6.46 86.73 0.56 4.11 16 18 C -0.10 -3.14 3.19 -9.52 -0.03 -3.17 16 19 H 0.08 2.60 8.00 -2.39 -0.02 2.58 16 20 C -0.13 -3.53 9.14 71.98 0.66 -2.88 16 21 C 0.17 6.31 3.14 46.47 0.15 6.46 16 22 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 23 N -0.72 -33.39 5.28 -315.98 -1.67 -35.06 16 24 C -0.24 -12.38 9.98 84.03 0.84 -11.54 16 25 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 26 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 27 N -0.97 -56.32 13.06 21.65 0.28 -56.04 16 28 Si 0.97 44.09 29.55 68.60 2.03 46.12 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 30 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 31 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 32 C 0.09 3.02 6.39 86.85 0.55 3.57 16 33 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 34 H 0.06 0.79 7.66 -2.38 -0.02 0.77 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.14 2.30 6.02 -2.91 -0.02 2.29 16 40 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.13 2.26 6.17 -2.39 -0.01 2.25 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.06 7.82 -2.39 -0.02 2.04 16 44 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.38 18.94 7.72 -92.71 -0.72 18.22 16 48 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.07 2.42 7.01 -2.39 -0.02 2.40 16 50 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -68.40 406.72 3.27 -65.13 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.23 Total: 38.64 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.04 Total: -3.80 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.09 Total: -113.65 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.94 Total: -32.43 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.40 3.27 -65.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082793441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.090 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds