Wall clock time and date at job start Wed Apr 1 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99648 * 2 1 4 4 C 1.38728 * 120.05187 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94270 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05495 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94261 * 179.97438 * 6 5 4 8 8 H 1.08996 * 115.55427 * 334.33249 * 7 6 5 9 9 C 1.53007 * 117.49698 * 188.62285 * 7 6 5 10 10 C 1.53000 * 117.49459 * 120.00441 * 7 6 5 11 11 H 1.09003 * 117.49914 * 359.97261 * 10 7 6 12 12 C 1.50708 * 117.49789 * 214.97755 * 10 7 6 13 13 O 1.21283 * 119.99560 * 359.97438 * 12 10 7 14 14 N 1.34772 * 119.99931 * 180.02562 * 12 10 7 15 15 C 1.47022 * 125.64566 * 180.02562 * 14 12 10 16 16 C 1.54322 * 107.27131 * 178.98048 * 15 14 12 17 17 H 1.09001 * 110.71965 * 96.16489 * 16 15 14 18 18 C 1.52998 * 110.72476 * 219.44215 * 16 15 14 19 19 C 1.55159 * 102.94499 * 337.80902 * 16 15 14 20 20 H 1.08997 * 111.00112 * 277.39164 * 19 16 15 21 21 N 1.46490 * 111.00840 * 153.57161 * 19 16 15 22 22 C 1.36935 * 120.00121 * 154.99548 * 21 19 16 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46685 * 269.99637 * 26 24 22 28 28 H 1.48494 * 109.47357 * 29.99716 * 26 24 22 29 29 H 1.48502 * 109.47120 * 150.00435 * 26 24 22 30 30 C 1.47426 * 125.65079 * 0.04469 * 14 12 10 31 31 C 1.38264 * 120.11078 * 0.27342 * 6 5 4 32 32 C 1.38148 * 120.05753 * 359.45416 * 31 6 5 33 33 H 1.09007 * 109.47504 * 60.00211 * 1 2 3 34 34 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47493 * 299.99948 * 1 2 3 36 36 H 1.08003 * 120.03184 * 0.02562 * 4 3 2 37 37 H 1.07998 * 119.97722 * 180.02562 * 5 4 3 38 38 H 1.08994 * 117.50074 * 145.02210 * 9 7 6 39 39 H 1.08997 * 117.49959 * 0.02562 * 9 7 6 40 40 H 1.08997 * 109.88394 * 59.56466 * 15 14 12 41 41 H 1.08999 * 109.88459 * 298.40025 * 15 14 12 42 42 H 1.08999 * 109.47166 * 173.52071 * 18 16 15 43 43 H 1.09002 * 109.46694 * 293.52866 * 18 16 15 44 44 H 1.09002 * 109.46944 * 53.52332 * 18 16 15 45 45 H 0.97000 * 120.00577 * 335.00148 * 21 19 16 46 46 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 47 47 H 1.09006 * 110.36031 * 85.25000 * 30 14 12 48 48 H 1.08995 * 110.37034 * 322.93422 * 30 14 12 49 49 H 1.08001 * 119.97088 * 179.69828 * 31 6 5 50 50 H 1.07995 * 120.03456 * 180.27434 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0559 2.5170 -0.0011 6 6 3.3017 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0016 8 1 4.9888 5.0353 0.4247 9 6 3.1109 6.2573 0.2013 10 6 3.7023 5.9559 -1.1772 11 1 3.0213 5.6011 -1.9508 12 6 4.8310 6.8318 -1.6568 13 8 5.9140 6.7769 -1.1135 14 7 4.6367 7.6768 -2.6886 15 6 5.6460 8.5829 -3.2558 16 6 4.9811 9.3321 -4.4298 17 1 4.6094 10.3042 -4.1059 18 6 5.9584 9.4859 -5.5968 19 6 3.8056 8.3966 -4.8178 20 1 4.1453 7.5926 -5.4706 21 7 2.7173 9.1523 -5.4428 22 6 1.8505 8.5247 -6.2971 23 1 1.9688 7.4726 -6.5098 24 6 0.8195 9.2409 -6.8897 25 7 0.6755 10.5234 -6.6309 26 14 -0.3634 8.3846 -8.0546 27 1 0.1597 8.4694 -9.4419 28 1 -0.4986 6.9586 -7.6628 29 1 -1.6916 9.0452 -7.9852 30 6 3.3767 7.8458 -3.4352 31 6 1.9209 3.6048 0.0041 32 6 1.2913 2.3752 -0.0010 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 4.0208 0.3800 -0.0014 37 1 5.1344 2.5752 -0.0019 38 1 3.5381 7.0891 0.7613 39 1 2.0405 6.1010 0.3352 40 1 6.4984 8.0082 -3.6180 41 1 5.9718 9.2957 -2.4982 42 1 5.4369 9.9126 -6.4536 43 1 6.7746 10.1458 -5.3026 44 1 6.3600 8.5089 -5.8656 45 1 2.6107 10.0973 -5.2516 46 1 1.2896 10.9679 -6.0257 47 1 2.7278 8.5595 -2.9274 48 1 2.8715 6.8867 -3.5489 49 1 1.3340 4.5114 0.0086 50 1 0.2128 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082793678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:27 Heat of formation + Delta-G solvation = -8.297917 kcal Electronic energy + Delta-G solvation = -29471.220610 eV Core-core repulsion = 25464.751395 eV Total energy + Delta-G solvation = -4006.469215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62369 -40.00371 -38.58743 -37.56623 -35.84169 -34.40282 -32.60340 -31.31275 -30.68417 -30.24598 -27.67629 -27.39826 -26.78563 -24.07778 -23.90557 -23.45174 -22.46200 -21.57674 -20.60023 -19.97969 -18.85986 -18.49329 -17.48976 -17.36435 -16.39092 -16.06622 -16.01079 -15.68457 -15.44641 -14.96079 -14.56048 -14.37813 -13.97938 -13.78581 -13.71798 -13.32170 -13.24255 -13.17897 -13.05391 -12.95409 -12.64545 -12.32184 -12.24065 -11.91586 -11.84066 -11.69805 -11.52370 -11.08947 -11.06262 -10.91000 -10.71424 -10.64553 -10.56208 -10.50150 -10.19679 -10.08715 -9.75245 -9.28348 -9.22763 -9.06207 -8.42091 -8.23451 -7.20376 -6.22079 -3.24651 1.10970 1.12933 2.59072 2.98800 3.07392 3.43964 3.45984 3.49505 3.63655 3.93027 4.34754 4.50404 4.56412 4.61353 4.64679 4.72767 4.77151 4.82594 4.84224 5.02602 5.03947 5.10616 5.13193 5.13712 5.16318 5.27001 5.43065 5.47826 5.52555 5.56305 5.66818 5.71999 5.78677 5.81801 5.82191 5.88419 5.89658 6.06157 6.10932 6.12493 6.15483 6.27932 6.34555 6.43914 6.46121 6.50992 6.52170 6.74751 7.11485 7.68618 7.72595 8.30274 8.63354 9.06910 9.93515 10.06892 11.25632 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.002746 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.359662 B =10195.799064 C =12741.283672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.121 3.879 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.087 4.087 7 C -0.079 4.079 8 H 0.126 0.874 9 C -0.145 4.145 10 C -0.172 4.172 11 H 0.125 0.875 12 C 0.556 3.444 13 O -0.554 6.554 14 N -0.608 5.608 15 C 0.117 3.883 16 C -0.116 4.116 17 H 0.082 0.918 18 C -0.134 4.134 19 C 0.182 3.818 20 H 0.070 0.930 21 N -0.721 5.721 22 C -0.339 4.339 23 H 0.067 0.933 24 C -0.039 4.039 25 N -0.940 5.940 26 Si 1.081 2.919 27 H -0.294 1.294 28 H -0.294 1.294 29 H -0.287 1.287 30 C 0.074 3.926 31 C -0.078 4.078 32 C -0.204 4.204 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.370 0.630 46 H 0.256 0.744 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.128 0.872 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -14.780 14.490 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.087 4.087 6 C -0.087 4.087 7 C -0.097 4.097 8 H 0.144 0.856 9 C -0.182 4.182 10 C -0.193 4.193 11 H 0.143 0.857 12 C 0.345 3.655 13 O -0.433 6.433 14 N -0.341 5.341 15 C -0.006 4.006 16 C -0.136 4.136 17 H 0.100 0.900 18 C -0.191 4.191 19 C 0.069 3.931 20 H 0.088 0.912 21 N -0.361 5.361 22 C -0.470 4.470 23 H 0.085 0.915 24 C -0.237 4.237 25 N -0.584 5.584 26 Si 0.912 3.088 27 H -0.222 1.222 28 H -0.221 1.221 29 H -0.213 1.213 30 C -0.051 4.051 31 C -0.096 4.096 32 C -0.222 4.222 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.204 0.796 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.146 0.854 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.937 -15.045 13.758 20.598 hybrid contribution 0.880 0.206 0.952 1.313 sum 3.817 -14.839 14.710 21.241 Atomic orbital electron populations 1.23064 0.78339 1.03928 1.01498 1.86060 1.21440 1.27013 1.88786 1.19059 0.92406 0.84142 0.96777 1.20405 0.91348 0.98586 1.06466 1.20815 1.00080 0.90685 0.97143 1.19040 0.93030 0.93281 1.03399 1.20994 1.00592 0.87721 1.00434 0.85643 1.23102 0.99866 0.99210 0.96000 1.22327 1.00839 1.02480 0.93642 0.85670 1.19235 0.88142 0.79356 0.78766 1.90656 1.26580 1.68844 1.57249 1.48411 1.14383 1.39126 1.32163 1.21975 0.91398 0.92055 0.95169 1.22542 0.97053 0.99526 0.94515 0.90011 1.21656 0.98074 1.01461 0.97938 1.21298 0.87563 0.93464 0.90724 0.91224 1.42296 1.31941 1.08699 1.53203 1.20072 1.09245 0.95304 1.22349 0.91522 1.25787 0.99291 0.96634 1.02037 1.70866 1.39953 1.09502 1.38103 0.83215 0.76189 0.73950 0.75449 1.22190 1.22065 1.21326 1.23476 0.85186 1.01559 0.94924 1.20893 0.93989 0.97311 0.97379 1.21212 1.00078 0.92204 1.08742 0.92488 0.88266 0.92639 0.85126 0.85063 0.87841 0.87486 0.91557 0.91987 0.91449 0.93119 0.92798 0.79622 0.93252 0.91361 0.91161 0.85409 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.22 10.50 -19.45 -0.20 -3.43 16 3 C 0.12 1.30 6.69 -39.22 -0.26 1.04 16 4 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 5 C -0.07 -0.73 9.73 -39.60 -0.39 -1.11 16 6 C -0.09 -0.96 5.61 -104.60 -0.59 -1.55 16 7 C -0.08 -0.92 5.55 -91.77 -0.51 -1.43 16 8 H 0.13 1.54 7.67 -51.93 -0.40 1.14 16 9 C -0.14 -1.57 9.56 -26.73 -0.26 -1.82 16 10 C -0.17 -2.25 5.17 -91.77 -0.47 -2.72 16 11 H 0.13 1.62 7.07 -51.93 -0.37 1.25 16 12 C 0.56 8.94 7.63 -10.98 -0.08 8.86 16 13 O -0.55 -10.27 16.58 5.56 0.09 -10.18 16 14 N -0.61 -9.72 3.33 -170.53 -0.57 -10.29 16 15 C 0.12 1.76 6.46 -3.06 -0.02 1.74 16 16 C -0.12 -1.81 3.20 -88.79 -0.28 -2.09 16 17 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 18 C -0.13 -1.90 9.16 37.16 0.34 -1.56 16 19 C 0.18 3.37 3.16 -65.80 -0.21 3.17 16 20 H 0.07 1.36 8.00 -51.93 -0.42 0.94 16 21 N -0.72 -16.55 5.24 -51.37 -0.27 -16.82 16 22 C -0.34 -8.89 9.96 -15.06 -0.15 -9.04 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 25 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16 26 Si 1.08 24.83 29.92 -169.99 -5.09 19.74 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 C 0.07 1.26 6.38 -2.54 -0.02 1.24 16 31 C -0.08 -0.80 9.30 -39.60 -0.37 -1.17 16 32 C -0.20 -2.03 9.04 -39.43 -0.36 -2.39 16 33 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 36 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.11 0.97 6.17 -51.93 -0.32 0.65 16 40 H 0.07 0.98 7.76 -51.93 -0.40 0.58 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.37 8.81 6.60 -40.82 -0.27 8.54 16 46 H 0.26 7.39 6.77 -40.82 -0.28 7.12 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.07 1.17 7.01 -51.93 -0.36 0.81 16 49 H 0.13 1.14 6.01 -52.49 -0.32 0.83 16 50 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -31.88 406.02 -9.95 -41.83 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.68 Total: 10.75 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.12 Total: -10.80 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.08 Total: -54.04 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.11 Total: -13.61 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.88 -9.95 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082793678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.531 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds