Wall clock time and date at job start Wed Apr 1 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99648 * 2 1 4 4 C 1.38728 * 120.05187 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94270 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05495 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94261 * 179.97438 * 6 5 4 8 8 H 1.08996 * 115.55427 * 334.33249 * 7 6 5 9 9 C 1.53007 * 117.49698 * 188.62285 * 7 6 5 10 10 C 1.53000 * 117.49459 * 120.00441 * 7 6 5 11 11 H 1.09003 * 117.49914 * 359.97261 * 10 7 6 12 12 C 1.50708 * 117.49789 * 214.97755 * 10 7 6 13 13 O 1.21283 * 119.99560 * 359.97438 * 12 10 7 14 14 N 1.34772 * 119.99931 * 180.02562 * 12 10 7 15 15 C 1.47022 * 125.64566 * 180.02562 * 14 12 10 16 16 C 1.54322 * 107.27131 * 178.98048 * 15 14 12 17 17 H 1.09001 * 110.71965 * 96.16489 * 16 15 14 18 18 C 1.52998 * 110.72476 * 219.44215 * 16 15 14 19 19 C 1.55159 * 102.94499 * 337.80902 * 16 15 14 20 20 H 1.08997 * 111.00112 * 277.39164 * 19 16 15 21 21 N 1.46490 * 111.00840 * 153.57161 * 19 16 15 22 22 C 1.36935 * 120.00121 * 154.99548 * 21 19 16 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46685 * 269.99637 * 26 24 22 28 28 H 1.48494 * 109.47357 * 29.99716 * 26 24 22 29 29 H 1.48502 * 109.47120 * 150.00435 * 26 24 22 30 30 C 1.47426 * 125.65079 * 0.04469 * 14 12 10 31 31 C 1.38264 * 120.11078 * 0.27342 * 6 5 4 32 32 C 1.38148 * 120.05753 * 359.45416 * 31 6 5 33 33 H 1.09007 * 109.47504 * 60.00211 * 1 2 3 34 34 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47493 * 299.99948 * 1 2 3 36 36 H 1.08003 * 120.03184 * 0.02562 * 4 3 2 37 37 H 1.07998 * 119.97722 * 180.02562 * 5 4 3 38 38 H 1.08994 * 117.50074 * 145.02210 * 9 7 6 39 39 H 1.08997 * 117.49959 * 0.02562 * 9 7 6 40 40 H 1.08997 * 109.88394 * 59.56466 * 15 14 12 41 41 H 1.08999 * 109.88459 * 298.40025 * 15 14 12 42 42 H 1.08999 * 109.47166 * 173.52071 * 18 16 15 43 43 H 1.09002 * 109.46694 * 293.52866 * 18 16 15 44 44 H 1.09002 * 109.46944 * 53.52332 * 18 16 15 45 45 H 0.97000 * 120.00577 * 335.00148 * 21 19 16 46 46 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 47 47 H 1.09006 * 110.36031 * 85.25000 * 30 14 12 48 48 H 1.08995 * 110.37034 * 322.93422 * 30 14 12 49 49 H 1.08001 * 119.97088 * 179.69828 * 31 6 5 50 50 H 1.07995 * 120.03456 * 180.27434 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0559 2.5170 -0.0011 6 6 3.3017 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0016 8 1 4.9888 5.0353 0.4247 9 6 3.1109 6.2573 0.2013 10 6 3.7023 5.9559 -1.1772 11 1 3.0213 5.6011 -1.9508 12 6 4.8310 6.8318 -1.6568 13 8 5.9140 6.7769 -1.1135 14 7 4.6367 7.6768 -2.6886 15 6 5.6460 8.5829 -3.2558 16 6 4.9811 9.3321 -4.4298 17 1 4.6094 10.3042 -4.1059 18 6 5.9584 9.4859 -5.5968 19 6 3.8056 8.3966 -4.8178 20 1 4.1453 7.5926 -5.4706 21 7 2.7173 9.1523 -5.4428 22 6 1.8505 8.5247 -6.2971 23 1 1.9688 7.4726 -6.5098 24 6 0.8195 9.2409 -6.8897 25 7 0.6755 10.5234 -6.6309 26 14 -0.3634 8.3846 -8.0546 27 1 0.1597 8.4694 -9.4419 28 1 -0.4986 6.9586 -7.6628 29 1 -1.6916 9.0452 -7.9852 30 6 3.3767 7.8458 -3.4352 31 6 1.9209 3.6048 0.0041 32 6 1.2913 2.3752 -0.0010 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 4.0208 0.3800 -0.0014 37 1 5.1344 2.5752 -0.0019 38 1 3.5381 7.0891 0.7613 39 1 2.0405 6.1010 0.3352 40 1 6.4984 8.0082 -3.6180 41 1 5.9718 9.2957 -2.4982 42 1 5.4369 9.9126 -6.4536 43 1 6.7746 10.1458 -5.3026 44 1 6.3600 8.5089 -5.8656 45 1 2.6107 10.0973 -5.2516 46 1 1.2896 10.9679 -6.0257 47 1 2.7278 8.5595 -2.9274 48 1 2.8715 6.8867 -3.5489 49 1 1.3340 4.5114 0.0086 50 1 0.2128 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082793678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:26 Heat of formation + Delta-G solvation = -25.643959 kcal Electronic energy + Delta-G solvation = -29471.972791 eV Core-core repulsion = 25464.751395 eV Total energy + Delta-G solvation = -4007.221396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60330 -41.01563 -39.65314 -38.68119 -36.81248 -36.19460 -34.01640 -32.42293 -32.06154 -31.02961 -29.01692 -28.36007 -27.85295 -25.80478 -24.79495 -24.69181 -23.23715 -23.00260 -21.54268 -21.28478 -20.07066 -19.40924 -19.21493 -18.48487 -17.39687 -17.33811 -16.86670 -16.64513 -16.44043 -16.21550 -15.88345 -15.63252 -15.46632 -14.81450 -14.73685 -14.58190 -14.54160 -14.38428 -14.06768 -13.93239 -13.76957 -13.33618 -13.27279 -13.08968 -12.87640 -12.73325 -12.62047 -12.46296 -12.31970 -12.21823 -12.09953 -11.86112 -11.84497 -11.64537 -11.48361 -11.36211 -11.23385 -11.03371 -10.89178 -9.99338 -9.77208 -9.14531 -9.02603 -8.36408 -5.33016 0.31384 0.35771 1.38501 1.61759 1.70648 1.83943 1.85758 2.36677 2.56667 2.71963 3.01202 3.22691 3.38838 3.56410 3.66677 3.70301 3.76727 3.81637 3.84906 3.94804 4.01934 4.03271 4.16127 4.27227 4.31834 4.34355 4.37583 4.38600 4.48791 4.53274 4.59508 4.65346 4.68779 4.74242 4.77761 4.80881 4.90372 5.00548 5.01768 5.02377 5.07235 5.14754 5.25466 5.28892 5.36342 5.37403 5.63194 5.64340 5.76591 6.41179 6.42080 6.52223 7.01945 7.08388 7.97438 8.08490 9.15039 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.002746 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.359662 B =10195.799064 C =12741.283672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.100 4.100 7 C -0.070 4.070 8 H 0.116 0.884 9 C -0.129 4.129 10 C -0.187 4.187 11 H 0.127 0.873 12 C 0.554 3.446 13 O -0.581 6.581 14 N -0.609 5.609 15 C 0.118 3.882 16 C -0.105 4.105 17 H 0.080 0.920 18 C -0.129 4.129 19 C 0.175 3.825 20 H 0.061 0.939 21 N -0.730 5.730 22 C -0.330 4.330 23 H 0.068 0.932 24 C -0.097 4.097 25 N -0.974 5.974 26 Si 1.125 2.875 27 H -0.288 1.288 28 H -0.272 1.272 29 H -0.295 1.295 30 C 0.090 3.910 31 C -0.082 4.082 32 C -0.208 4.208 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.364 0.636 46 H 0.247 0.753 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.142 0.858 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.244 -16.080 15.114 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.066 3.934 4 C -0.179 4.179 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.088 4.088 8 H 0.134 0.866 9 C -0.166 4.166 10 C -0.207 4.207 11 H 0.145 0.855 12 C 0.344 3.656 13 O -0.462 6.462 14 N -0.341 5.341 15 C -0.004 4.004 16 C -0.125 4.125 17 H 0.098 0.902 18 C -0.186 4.186 19 C 0.064 3.936 20 H 0.079 0.921 21 N -0.371 5.371 22 C -0.461 4.461 23 H 0.086 0.914 24 C -0.289 4.289 25 N -0.622 5.622 26 Si 0.950 3.050 27 H -0.215 1.215 28 H -0.198 1.198 29 H -0.222 1.222 30 C -0.036 4.036 31 C -0.100 4.100 32 C -0.226 4.226 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.197 0.803 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.160 0.840 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.588 -16.380 14.407 21.967 hybrid contribution 1.069 0.533 0.816 1.447 sum 3.658 -15.848 15.223 22.277 Atomic orbital electron populations 1.23335 0.76541 1.05549 1.02210 1.86042 1.23383 1.26856 1.88677 1.19269 0.92727 0.84731 0.96640 1.20606 0.91765 0.98972 1.06602 1.20978 1.00660 0.90741 0.97029 1.19077 0.93532 0.92952 1.04469 1.20912 1.00479 0.88339 0.99120 0.86617 1.23236 1.01038 0.98654 0.93666 1.22293 1.00490 1.03297 0.94666 0.85470 1.19721 0.88508 0.79143 0.78189 1.90640 1.27851 1.69705 1.58012 1.48440 1.14077 1.39374 1.32243 1.22004 0.91288 0.92123 0.95018 1.22443 0.96094 0.98737 0.95214 0.90191 1.21616 0.98208 1.02288 0.96510 1.21433 0.87482 0.93655 0.91007 0.92052 1.42370 1.32675 1.08635 1.53388 1.20355 1.08930 0.95340 1.21488 0.91390 1.27034 1.01391 0.96637 1.03830 1.70966 1.40812 1.10739 1.39687 0.82646 0.74027 0.74126 0.74159 1.21465 1.19765 1.22172 1.23110 0.85388 1.01346 0.93720 1.21090 0.93807 0.98087 0.96968 1.21451 1.01143 0.91804 1.08228 0.92047 0.86345 0.91575 0.84192 0.84271 0.87837 0.85272 0.90997 0.91156 0.93470 0.90625 0.92177 0.80349 0.94293 0.92004 0.90865 0.84021 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.32 10.50 -92.50 -0.97 -7.29 16 3 C 0.11 2.25 6.69 22.51 0.15 2.40 16 4 C -0.16 -3.22 9.99 22.36 0.22 -3.00 16 5 C -0.08 -1.54 9.73 22.26 0.22 -1.32 16 6 C -0.10 -2.08 5.61 -19.85 -0.11 -2.19 16 7 C -0.07 -1.54 5.55 -11.54 -0.06 -1.61 16 8 H 0.12 2.79 7.67 -2.39 -0.02 2.77 16 9 C -0.13 -2.56 9.56 30.60 0.29 -2.26 16 10 C -0.19 -4.65 5.17 -11.54 -0.06 -4.71 16 11 H 0.13 3.12 7.07 -2.39 -0.02 3.10 16 12 C 0.55 17.30 7.63 87.66 0.67 17.97 16 13 O -0.58 -21.14 16.58 -3.04 -0.05 -21.19 16 14 N -0.61 -18.83 3.33 -811.83 -2.70 -21.53 16 15 C 0.12 3.40 6.46 86.73 0.56 3.96 16 16 C -0.11 -3.17 3.20 -9.61 -0.03 -3.20 16 17 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 18 C -0.13 -3.50 9.16 71.98 0.66 -2.84 16 19 C 0.17 6.40 3.16 46.38 0.15 6.54 16 20 H 0.06 2.36 8.00 -2.39 -0.02 2.34 16 21 N -0.73 -33.61 5.24 -316.43 -1.66 -35.27 16 22 C -0.33 -17.22 9.96 84.03 0.84 -16.38 16 23 H 0.07 3.48 7.83 -2.91 -0.02 3.45 16 24 C -0.10 -5.33 5.50 84.86 0.47 -4.86 16 25 N -0.97 -58.16 13.70 21.65 0.30 -57.87 16 26 Si 1.12 49.66 29.92 68.60 2.05 51.72 16 27 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 30 C 0.09 2.97 6.38 86.85 0.55 3.52 16 31 C -0.08 -1.53 9.30 22.25 0.21 -1.33 16 32 C -0.21 -3.76 9.04 22.37 0.20 -3.56 16 33 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 34 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 36 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.13 1.97 6.17 -2.39 -0.01 1.96 16 40 H 0.07 2.01 7.76 -2.39 -0.02 1.99 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.55 8.06 -2.39 -0.02 1.53 16 45 H 0.36 17.60 6.60 -92.71 -0.61 16.99 16 46 H 0.25 14.57 6.77 -92.71 -0.63 13.94 16 47 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.07 2.37 7.01 -2.39 -0.02 2.35 16 49 H 0.14 2.16 6.01 -2.91 -0.02 2.15 16 50 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 Total: -1.00 -67.95 406.02 3.48 -64.47 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.48 Total: 38.52 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 6.03 Total: -11.55 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -4.06 Total: -114.66 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.02 Total: -28.48 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.72 kcal Total: -67.95 3.48 -64.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082793678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.822 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds