Wall clock time and date at job start Wed Apr 1 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99555 * 2 1 4 4 C 1.38756 * 120.05990 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94313 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05645 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11150 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.97011 * 180.02562 * 7 6 5 9 9 H 1.09004 * 115.56587 * 154.30974 * 8 7 6 10 10 C 1.53000 * 117.50175 * 8.62169 * 8 7 6 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 7 12 12 H 1.08999 * 117.52022 * 107.47599 * 11 10 8 13 13 C 1.50702 * 117.49714 * 252.51395 * 11 10 8 14 14 O 1.21277 * 120.00599 * 68.61769 * 13 11 10 15 15 N 1.34778 * 119.99457 * 248.61531 * 13 11 10 16 16 C 1.47023 * 125.64642 * 179.71436 * 15 13 11 17 17 C 1.54336 * 107.26494 * 178.85202 * 16 15 13 18 18 H 1.08997 * 110.66419 * 96.52849 * 17 16 15 19 19 C 1.52995 * 110.84811 * 219.67399 * 17 16 15 20 20 C 1.55152 * 103.02078 * 338.14193 * 17 16 15 21 21 H 1.09003 * 111.00416 * 277.23336 * 20 17 16 22 22 N 1.46504 * 111.03551 * 153.39625 * 20 17 16 23 23 C 1.36936 * 119.99593 * 161.33069 * 22 20 17 24 24 H 1.07993 * 120.00586 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99811 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00279 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99868 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47402 * 89.99802 * 27 25 23 29 29 H 1.48500 * 109.47059 * 210.00403 * 27 25 23 30 30 H 1.48510 * 109.47298 * 330.00133 * 27 25 23 31 31 C 1.47423 * 125.65180 * 0.02864 * 15 13 11 32 32 C 1.38165 * 120.05798 * 0.27918 * 7 6 5 33 33 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47139 * 299.99262 * 1 2 3 35 35 H 1.09002 * 109.47375 * 59.99952 * 1 2 3 36 36 H 1.07995 * 120.02709 * 0.04248 * 4 3 2 37 37 H 1.07994 * 119.96756 * 179.97438 * 5 4 3 38 38 H 1.08000 * 119.93879 * 180.02562 * 6 5 4 39 39 H 1.09002 * 117.49696 * 0.02562 * 10 8 7 40 40 H 1.09002 * 117.50343 * 145.02291 * 10 8 7 41 41 H 1.09004 * 109.88409 * 298.39628 * 16 15 13 42 42 H 1.08999 * 109.88180 * 59.55835 * 16 15 13 43 43 H 1.09003 * 109.47202 * 173.69276 * 19 17 16 44 44 H 1.09010 * 109.47298 * 293.69133 * 19 17 16 45 45 H 1.08999 * 109.47515 * 53.69203 * 19 17 16 46 46 H 0.96998 * 120.00055 * 341.33008 * 22 20 17 47 47 H 0.96999 * 120.00345 * 179.97438 * 26 25 23 48 48 H 1.09001 * 110.36446 * 322.92726 * 31 15 13 49 49 H 1.09001 * 110.36908 * 85.13569 * 31 15 13 50 50 H 1.07995 * 120.02876 * 179.73737 * 32 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5171 0.0000 8 6 5.5606 2.5982 0.0000 9 1 6.0781 1.7389 0.4267 10 6 6.1939 3.9762 0.2028 11 6 6.2296 3.3134 -1.1757 12 1 5.5812 3.7248 -1.9492 13 6 7.5533 2.7756 -1.6551 14 8 8.0485 1.8108 -1.1122 15 7 8.1868 3.3670 -2.6873 16 6 9.4798 2.9517 -3.2504 17 6 9.7916 3.8985 -4.4287 18 1 10.4469 4.7084 -4.1083 19 6 10.4153 3.1293 -5.5949 20 6 8.3926 4.4453 -4.8174 21 1 7.8675 3.7470 -5.4692 22 7 8.4994 5.7652 -5.4439 23 6 7.4629 6.2527 -6.1944 24 1 6.5666 5.6644 -6.3240 25 6 7.5642 7.5032 -6.7886 26 7 6.5678 7.9720 -7.5094 27 14 9.1142 8.5212 -6.5638 28 1 10.0773 8.2026 -7.6482 29 1 8.7701 9.9649 -6.6155 30 1 9.7275 8.2054 -5.2486 31 6 7.7010 4.5413 -3.4346 32 6 3.4311 1.2848 -0.0048 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8901 35 1 -0.3634 0.5138 -0.8900 36 1 0.2127 2.3203 0.0016 37 1 1.3338 4.5113 0.0000 38 1 3.7920 4.6381 -0.0005 39 1 5.5221 4.8240 0.3367 40 1 7.1278 4.0234 0.7629 41 1 10.2579 3.0327 -2.4913 42 1 9.4150 1.9247 -3.6096 43 1 10.5228 3.7937 -6.4523 44 1 11.3958 2.7549 -5.3003 45 1 9.7720 2.2913 -5.8631 46 1 9.3042 6.2939 -5.3272 47 1 6.6385 8.8460 -7.9243 48 1 6.6179 4.4972 -3.5482 49 1 7.9912 5.4610 -2.9264 50 1 4.0206 0.3800 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082793878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:30 Heat of formation + Delta-G solvation = -3.792356 kcal Electronic energy + Delta-G solvation = -29505.041891 eV Core-core repulsion = 25498.768051 eV Total energy + Delta-G solvation = -4006.273839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.60807 -39.99542 -38.57680 -37.56650 -35.87390 -34.22421 -32.57386 -31.31439 -31.08695 -30.07599 -27.93829 -27.60867 -26.91218 -24.22148 -23.73948 -23.38147 -22.64101 -21.27065 -20.54778 -20.13805 -18.89094 -18.09797 -17.60091 -17.05212 -16.48766 -16.16041 -16.12486 -15.98746 -15.50908 -14.85855 -14.58840 -14.28922 -14.08905 -13.68513 -13.59919 -13.31834 -13.26245 -13.05253 -12.89352 -12.85554 -12.65535 -12.45762 -11.98152 -11.89119 -11.84768 -11.80748 -11.54113 -11.44275 -11.17394 -10.99267 -10.86238 -10.71837 -10.64204 -10.60169 -10.41195 -10.00767 -9.77445 -9.67770 -9.08246 -8.88378 -8.42386 -8.38061 -7.43034 -5.88086 -3.26221 1.05507 1.26261 2.59475 2.97182 3.08894 3.29583 3.32477 3.38744 3.47346 3.94916 4.34148 4.48735 4.56514 4.60938 4.67231 4.74744 4.82674 4.83861 4.85160 4.90964 4.96347 5.07015 5.12464 5.13562 5.15471 5.31202 5.38563 5.48608 5.51841 5.55607 5.66340 5.67986 5.74348 5.78551 5.81536 5.87294 5.95031 6.08497 6.08828 6.09920 6.25020 6.26085 6.31031 6.42168 6.44588 6.49039 6.55401 6.72609 7.16348 7.70713 7.86082 8.29642 8.31283 9.07033 9.79127 9.97311 11.29535 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.002502 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.051571 B =11189.654851 C =12572.081013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.076 4.076 6 C -0.154 4.154 7 C -0.011 4.011 8 C -0.087 4.087 9 H 0.128 0.872 10 C -0.141 4.141 11 C -0.169 4.169 12 H 0.129 0.871 13 C 0.557 3.443 14 O -0.553 6.553 15 N -0.609 5.609 16 C 0.117 3.883 17 C -0.117 4.117 18 H 0.082 0.918 19 C -0.136 4.136 20 C 0.182 3.818 21 H 0.074 0.926 22 N -0.735 5.735 23 C -0.252 4.252 24 H 0.092 0.908 25 C 0.010 3.990 26 N -0.929 5.929 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.276 1.276 31 C 0.075 3.925 32 C -0.142 4.142 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.364 0.636 47 H 0.261 0.739 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 -11.580 16.403 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.094 4.094 6 C -0.172 4.172 7 C -0.011 4.011 8 C -0.105 4.105 9 H 0.146 0.854 10 C -0.178 4.178 11 C -0.190 4.190 12 H 0.146 0.854 13 C 0.346 3.654 14 O -0.432 6.432 15 N -0.342 5.342 16 C -0.005 4.005 17 C -0.137 4.137 18 H 0.100 0.900 19 C -0.194 4.194 20 C 0.070 3.930 21 H 0.092 0.908 22 N -0.376 5.376 23 C -0.382 4.382 24 H 0.110 0.890 25 C -0.186 4.186 26 N -0.575 5.575 27 Si 0.713 3.287 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.203 1.203 31 C -0.051 4.051 32 C -0.160 4.160 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.198 0.802 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.387 -12.260 16.573 21.582 hybrid contribution 0.643 1.164 -0.025 1.330 sum -5.744 -11.096 16.548 20.736 Atomic orbital electron populations 1.23051 0.78420 1.03903 1.01362 1.86072 1.21352 1.26983 1.88769 1.18960 0.92181 0.84160 0.96499 1.21230 0.99965 0.92448 1.09468 1.20916 0.94459 0.97048 0.96988 1.21023 0.93772 0.98292 1.04162 1.18869 0.92985 0.92366 0.96925 1.21053 0.90599 0.97862 1.01032 0.85441 1.23121 1.03056 0.95760 0.95878 1.22324 0.96964 1.05965 0.93697 0.85356 1.19208 0.84971 0.82488 0.78749 1.90661 1.67815 1.27472 1.57248 1.48402 1.21842 1.31677 1.32233 1.21964 0.84945 0.98577 0.95056 1.22516 0.98569 0.97863 0.94707 0.89979 1.21688 0.99772 1.00106 0.97800 1.21338 0.92250 0.88494 0.90926 0.90806 1.42638 1.18801 1.16114 1.60080 1.19048 0.95773 1.00536 1.22808 0.89012 1.24675 0.97256 0.97366 0.99335 1.69692 1.31209 1.19464 1.37182 0.86586 0.83949 0.80304 0.77860 1.20944 1.21659 1.20256 1.23440 1.00264 0.86856 0.94533 1.20209 0.91246 0.98271 1.06296 0.88278 0.92702 0.92576 0.85574 0.85578 0.85438 0.87215 0.87757 0.91909 0.91423 0.91440 0.93028 0.92512 0.80231 0.92883 0.90743 0.91164 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.40 10.50 -19.40 -0.20 -3.60 16 3 C 0.13 1.44 6.69 -39.21 -0.26 1.17 16 4 C -0.21 -2.09 9.04 -39.43 -0.36 -2.44 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 6 C -0.15 -1.62 9.30 -39.56 -0.37 -1.99 16 7 C -0.01 -0.13 5.61 -104.65 -0.59 -0.72 16 8 C -0.09 -1.02 5.55 -91.77 -0.51 -1.53 16 9 H 0.13 1.60 7.67 -51.93 -0.40 1.20 16 10 C -0.14 -1.50 9.56 -26.73 -0.26 -1.76 16 11 C -0.17 -2.18 5.17 -91.77 -0.47 -2.66 16 12 H 0.13 1.64 7.07 -51.93 -0.37 1.28 16 13 C 0.56 8.77 7.63 -10.98 -0.08 8.69 16 14 O -0.55 -10.11 16.58 5.56 0.09 -10.01 16 15 N -0.61 -9.37 3.33 -170.51 -0.57 -9.93 16 16 C 0.12 1.68 6.48 -3.06 -0.02 1.66 16 17 C -0.12 -1.69 3.16 -88.78 -0.28 -1.97 16 18 H 0.08 1.17 7.99 -51.93 -0.42 0.76 16 19 C -0.14 -1.77 9.16 37.15 0.34 -1.43 16 20 C 0.18 3.18 3.13 -65.78 -0.21 2.98 16 21 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 22 N -0.73 -15.79 5.08 -51.35 -0.26 -16.05 16 23 C -0.25 -6.59 10.47 -15.06 -0.16 -6.75 16 24 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 25 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 26 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 27 Si 0.88 20.91 27.73 -169.99 -4.71 16.20 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 31 C 0.07 1.21 6.38 -2.53 -0.02 1.19 16 32 C -0.14 -1.68 9.68 -39.43 -0.38 -2.07 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 35 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 36 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.16 6.01 -52.49 -0.32 0.84 16 39 H 0.11 0.97 6.17 -51.93 -0.32 0.65 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 45 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 46 H 0.36 7.73 5.57 -40.82 -0.23 7.50 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.07 1.21 7.01 -51.93 -0.36 0.84 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -32.05 404.61 -9.65 -41.70 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.75 Total: 10.12 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.12 Total: -7.39 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.05 Total: -53.10 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.11 Total: -13.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.20 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.05 -9.65 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082793878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.909 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds