Wall clock time and date at job start Wed Apr 1 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99555 * 2 1 4 4 C 1.38756 * 120.05990 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94313 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05645 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11150 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.97011 * 180.02562 * 7 6 5 9 9 H 1.09004 * 115.56587 * 154.30974 * 8 7 6 10 10 C 1.53000 * 117.50175 * 8.62169 * 8 7 6 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 7 12 12 H 1.08999 * 117.52022 * 107.47599 * 11 10 8 13 13 C 1.50702 * 117.49714 * 252.51395 * 11 10 8 14 14 O 1.21277 * 120.00599 * 68.61769 * 13 11 10 15 15 N 1.34778 * 119.99457 * 248.61531 * 13 11 10 16 16 C 1.47023 * 125.64642 * 179.71436 * 15 13 11 17 17 C 1.54336 * 107.26494 * 178.85202 * 16 15 13 18 18 H 1.08997 * 110.66419 * 96.52849 * 17 16 15 19 19 C 1.52995 * 110.84811 * 219.67399 * 17 16 15 20 20 C 1.55152 * 103.02078 * 338.14193 * 17 16 15 21 21 H 1.09003 * 111.00416 * 277.23336 * 20 17 16 22 22 N 1.46504 * 111.03551 * 153.39625 * 20 17 16 23 23 C 1.36936 * 119.99593 * 161.33069 * 22 20 17 24 24 H 1.07993 * 120.00586 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99811 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00279 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99868 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47402 * 89.99802 * 27 25 23 29 29 H 1.48500 * 109.47059 * 210.00403 * 27 25 23 30 30 H 1.48510 * 109.47298 * 330.00133 * 27 25 23 31 31 C 1.47423 * 125.65180 * 0.02864 * 15 13 11 32 32 C 1.38165 * 120.05798 * 0.27918 * 7 6 5 33 33 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47139 * 299.99262 * 1 2 3 35 35 H 1.09002 * 109.47375 * 59.99952 * 1 2 3 36 36 H 1.07995 * 120.02709 * 0.04248 * 4 3 2 37 37 H 1.07994 * 119.96756 * 179.97438 * 5 4 3 38 38 H 1.08000 * 119.93879 * 180.02562 * 6 5 4 39 39 H 1.09002 * 117.49696 * 0.02562 * 10 8 7 40 40 H 1.09002 * 117.50343 * 145.02291 * 10 8 7 41 41 H 1.09004 * 109.88409 * 298.39628 * 16 15 13 42 42 H 1.08999 * 109.88180 * 59.55835 * 16 15 13 43 43 H 1.09003 * 109.47202 * 173.69276 * 19 17 16 44 44 H 1.09010 * 109.47298 * 293.69133 * 19 17 16 45 45 H 1.08999 * 109.47515 * 53.69203 * 19 17 16 46 46 H 0.96998 * 120.00055 * 341.33008 * 22 20 17 47 47 H 0.96999 * 120.00345 * 179.97438 * 26 25 23 48 48 H 1.09001 * 110.36446 * 322.92726 * 31 15 13 49 49 H 1.09001 * 110.36908 * 85.13569 * 31 15 13 50 50 H 1.07995 * 120.02876 * 179.73737 * 32 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5171 0.0000 8 6 5.5606 2.5982 0.0000 9 1 6.0781 1.7389 0.4267 10 6 6.1939 3.9762 0.2028 11 6 6.2296 3.3134 -1.1757 12 1 5.5812 3.7248 -1.9492 13 6 7.5533 2.7756 -1.6551 14 8 8.0485 1.8108 -1.1122 15 7 8.1868 3.3670 -2.6873 16 6 9.4798 2.9517 -3.2504 17 6 9.7916 3.8985 -4.4287 18 1 10.4469 4.7084 -4.1083 19 6 10.4153 3.1293 -5.5949 20 6 8.3926 4.4453 -4.8174 21 1 7.8675 3.7470 -5.4692 22 7 8.4994 5.7652 -5.4439 23 6 7.4629 6.2527 -6.1944 24 1 6.5666 5.6644 -6.3240 25 6 7.5642 7.5032 -6.7886 26 7 6.5678 7.9720 -7.5094 27 14 9.1142 8.5212 -6.5638 28 1 10.0773 8.2026 -7.6482 29 1 8.7701 9.9649 -6.6155 30 1 9.7275 8.2054 -5.2486 31 6 7.7010 4.5413 -3.4346 32 6 3.4311 1.2848 -0.0048 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8901 35 1 -0.3634 0.5138 -0.8900 36 1 0.2127 2.3203 0.0016 37 1 1.3338 4.5113 0.0000 38 1 3.7920 4.6381 -0.0005 39 1 5.5221 4.8240 0.3367 40 1 7.1278 4.0234 0.7629 41 1 10.2579 3.0327 -2.4913 42 1 9.4150 1.9247 -3.6096 43 1 10.5228 3.7937 -6.4523 44 1 11.3958 2.7549 -5.3003 45 1 9.7720 2.2913 -5.8631 46 1 9.3042 6.2939 -5.3272 47 1 6.6385 8.8460 -7.9243 48 1 6.6179 4.4972 -3.5482 49 1 7.9912 5.4610 -2.9264 50 1 4.0206 0.3800 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082793878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:29 Heat of formation + Delta-G solvation = -22.143354 kcal Electronic energy + Delta-G solvation = -29505.837650 eV Core-core repulsion = 25498.768051 eV Total energy + Delta-G solvation = -4007.069598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59010 -41.00137 -39.63042 -38.65867 -36.83852 -35.95465 -33.98789 -32.89379 -32.09047 -30.86701 -29.46705 -28.20931 -28.01492 -25.74407 -24.84297 -24.43742 -23.47514 -22.70735 -21.59316 -21.32157 -20.07729 -19.50161 -18.93618 -18.14828 -17.48330 -17.22665 -17.09624 -16.67349 -16.60551 -16.33882 -15.78386 -15.60513 -15.24781 -14.83277 -14.76110 -14.56718 -14.44274 -14.38464 -14.06593 -13.82458 -13.76809 -13.41996 -13.24492 -13.16064 -12.96603 -12.90367 -12.64815 -12.56932 -12.31898 -12.20598 -12.08728 -11.94002 -11.79944 -11.75033 -11.57953 -11.53203 -11.37921 -11.07170 -10.91129 -9.76345 -9.69924 -9.32583 -9.17100 -7.99738 -5.35330 0.23846 0.45878 1.41007 1.42348 1.45091 1.52086 1.88175 2.33159 2.51153 2.58832 3.02460 3.21859 3.30333 3.56485 3.63801 3.70538 3.78672 3.85909 3.87462 3.94665 4.04255 4.10791 4.13867 4.27760 4.33475 4.35353 4.38605 4.40202 4.52282 4.56085 4.65707 4.69903 4.71461 4.76378 4.84409 4.87170 4.95714 4.99003 5.07439 5.08013 5.08361 5.19870 5.30695 5.31851 5.44233 5.47574 5.62464 5.79223 5.79494 6.23267 6.43788 6.44326 7.05165 7.09309 7.81818 8.01861 9.21170 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.002502 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.051571 B =11189.654851 C =12572.081013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.115 3.885 4 C -0.213 4.213 5 C -0.078 4.078 6 C -0.161 4.161 7 C -0.021 4.021 8 C -0.084 4.084 9 H 0.114 0.886 10 C -0.120 4.120 11 C -0.183 4.183 12 H 0.129 0.871 13 C 0.554 3.446 14 O -0.582 6.582 15 N -0.609 5.609 16 C 0.117 3.883 17 C -0.103 4.103 18 H 0.092 0.908 19 C -0.134 4.134 20 C 0.173 3.827 21 H 0.060 0.940 22 N -0.734 5.734 23 C -0.230 4.230 24 H 0.059 0.941 25 C -0.058 4.058 26 N -0.982 5.982 27 Si 0.950 3.050 28 H -0.280 1.280 29 H -0.300 1.300 30 H -0.247 1.247 31 C 0.087 3.913 32 C -0.165 4.165 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.370 0.630 47 H 0.257 0.743 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 -11.088 17.943 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.070 3.930 4 C -0.231 4.231 5 C -0.096 4.096 6 C -0.179 4.179 7 C -0.021 4.021 8 C -0.103 4.103 9 H 0.132 0.868 10 C -0.157 4.157 11 C -0.204 4.204 12 H 0.147 0.853 13 C 0.345 3.655 14 O -0.463 6.463 15 N -0.341 5.341 16 C -0.006 4.006 17 C -0.123 4.123 18 H 0.110 0.890 19 C -0.191 4.191 20 C 0.063 3.937 21 H 0.078 0.922 22 N -0.377 5.377 23 C -0.361 4.361 24 H 0.077 0.923 25 C -0.250 4.250 26 N -0.632 5.632 27 Si 0.778 3.222 28 H -0.206 1.206 29 H -0.227 1.227 30 H -0.171 1.171 31 C -0.038 4.038 32 C -0.184 4.184 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.204 0.796 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.709 -11.817 18.151 22.399 hybrid contribution 0.328 0.849 -0.486 1.032 sum -5.380 -10.968 17.665 21.478 Atomic orbital electron populations 1.23343 0.76359 1.05536 1.02325 1.86043 1.23583 1.27011 1.88755 1.19124 0.92175 0.85018 0.96695 1.21535 1.01192 0.91949 1.08455 1.21278 0.94418 0.98007 0.95892 1.21251 0.94338 0.98405 1.03916 1.18891 0.92747 0.92746 0.97717 1.20962 0.90906 0.98197 1.00199 0.86794 1.23262 1.03329 0.95733 0.93373 1.22288 0.95767 1.07625 0.94701 0.85327 1.19642 0.85594 0.81972 0.78336 1.90644 1.68798 1.28681 1.58160 1.48427 1.22220 1.31343 1.32115 1.22045 0.84776 0.98570 0.95177 1.22446 0.96546 0.98138 0.95167 0.88982 1.21677 1.01089 0.99658 0.96676 1.21467 0.94757 0.86524 0.90998 0.92182 1.42522 1.17739 1.17467 1.59930 1.18967 0.95577 0.99741 1.21794 0.92251 1.25448 1.00669 0.98988 0.99881 1.69873 1.33915 1.19961 1.39409 0.85486 0.79941 0.77648 0.79136 1.20638 1.22729 1.17147 1.23137 0.99830 0.87257 0.93608 1.20320 0.92025 0.98342 1.07678 0.86486 0.91375 0.91855 0.83234 0.83040 0.83971 0.84918 0.87422 0.90760 0.91254 0.92663 0.90441 0.92515 0.79618 0.93366 0.91186 0.90949 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.18 10.50 -92.34 -0.97 -8.15 16 3 C 0.12 2.57 6.69 22.51 0.15 2.72 16 4 C -0.21 -3.84 9.04 22.37 0.20 -3.64 16 5 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 6 C -0.16 -3.13 9.30 22.28 0.21 -2.92 16 7 C -0.02 -0.47 5.61 -19.88 -0.11 -0.59 16 8 C -0.08 -1.96 5.55 -11.54 -0.06 -2.03 16 9 H 0.11 2.96 7.67 -2.38 -0.02 2.94 16 10 C -0.12 -2.36 9.56 30.59 0.29 -2.07 16 11 C -0.18 -4.63 5.17 -11.54 -0.06 -4.69 16 12 H 0.13 3.24 7.07 -2.39 -0.02 3.22 16 13 C 0.55 17.16 7.63 87.66 0.67 17.83 16 14 O -0.58 -21.17 16.58 -3.02 -0.05 -21.22 16 15 N -0.61 -18.06 3.33 -811.77 -2.70 -20.76 16 16 C 0.12 3.11 6.48 86.73 0.56 3.68 16 17 C -0.10 -2.76 3.16 -9.60 -0.03 -2.79 16 18 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 19 C -0.13 -3.18 9.16 71.98 0.66 -2.52 16 20 C 0.17 5.89 3.13 46.38 0.15 6.04 16 21 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 22 N -0.73 -30.69 5.08 -316.37 -1.61 -32.29 16 23 C -0.23 -12.11 10.47 84.04 0.88 -11.23 16 24 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 25 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 26 N -0.98 -60.36 13.97 21.65 0.30 -60.06 16 27 Si 0.95 42.69 27.73 68.60 1.90 44.60 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 30 H -0.25 -9.78 6.52 99.48 0.65 -9.13 16 31 C 0.09 2.73 6.38 86.85 0.55 3.28 16 32 C -0.16 -4.03 9.68 22.37 0.22 -3.81 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 35 H 0.06 0.63 7.66 -2.39 -0.02 0.62 16 36 H 0.15 1.88 6.30 -2.91 -0.02 1.86 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.14 2.24 6.01 -2.91 -0.02 2.22 16 39 H 0.13 1.99 6.17 -2.39 -0.01 1.98 16 40 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.84 7.77 -2.39 -0.02 1.83 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 46 H 0.37 14.75 5.57 -92.71 -0.52 14.23 16 47 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 48 H 0.07 2.25 7.01 -2.39 -0.02 2.23 16 49 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -70.48 404.61 3.33 -67.15 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.37 Total: 36.04 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 6.08 Total: -5.31 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.00 Total: -113.12 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.02 Total: -29.36 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.90 Total: 44.60 kcal Total: -70.48 3.33 -67.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082793878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.007 kcal (2) G-P(sol) polarization free energy of solvation -70.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds