Wall clock time and date at job start Wed Apr 1 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.53830 * 2 1 4 4 C 1.54811 * 110.49048 * 237.38665 * 2 1 3 5 5 C 1.54993 * 102.09270 * 220.43999 * 4 2 1 6 6 O 1.44381 * 103.49039 * 37.02338 * 5 4 2 7 7 C 1.43744 * 106.97348 * 319.93756 * 6 5 4 8 8 H 1.09000 * 109.88220 * 266.93718 * 7 6 5 9 9 C 1.50704 * 109.87916 * 145.93739 * 7 6 5 10 10 O 1.21285 * 119.99942 * 356.45776 * 9 7 6 11 11 N 1.34776 * 119.99997 * 176.45278 * 9 7 6 12 12 C 1.46502 * 119.99750 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.64376 * 34.29970 * 12 11 9 14 14 C 1.54329 * 110.86989 * 271.05135 * 12 11 9 15 15 N 1.47024 * 107.26768 * 219.37490 * 14 12 11 16 16 C 1.36936 * 125.64554 * 178.90536 * 15 14 12 17 17 H 1.07996 * 120.00222 * 180.02562 * 16 15 14 18 18 C 1.38817 * 120.00018 * 0.03918 * 16 15 14 19 19 N 1.31619 * 119.99933 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00108 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46736 * 60.00276 * 20 18 16 22 22 H 1.48495 * 109.47026 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47121 * 300.00426 * 20 18 16 24 24 C 1.47422 * 108.70528 * 358.94041 * 15 14 12 25 25 C 1.54904 * 104.83381 * 24.13062 * 24 15 14 26 26 H 1.08995 * 111.04351 * 81.07723 * 25 24 15 27 27 C 1.50700 * 111.00542 * 204.91686 * 25 24 15 28 28 C 1.38237 * 119.99785 * 51.92089 * 27 25 24 29 29 C 1.38235 * 120.00063 * 179.78811 * 28 27 25 30 30 C 1.38244 * 119.99685 * 0.44425 * 29 28 27 31 31 C 1.38239 * 119.99834 * 359.80702 * 30 29 28 32 32 C 1.38229 * 120.00345 * 232.19334 * 27 25 24 33 33 H 1.09000 * 109.47256 * 297.37688 * 1 2 3 34 34 H 1.08995 * 109.47729 * 57.38709 * 1 2 3 35 35 H 1.09004 * 109.47257 * 177.38289 * 1 2 3 36 36 H 1.08994 * 110.90733 * 102.24239 * 4 2 1 37 37 H 1.09005 * 110.93582 * 338.65141 * 4 2 1 38 38 H 1.09001 * 110.62238 * 278.52490 * 5 4 2 39 39 H 1.08996 * 110.61864 * 155.52033 * 5 4 2 40 40 H 0.96994 * 120.00333 * 0.02562 * 11 9 7 41 41 H 1.08998 * 109.88112 * 338.79115 * 14 12 11 42 42 H 1.08998 * 109.88173 * 99.95952 * 14 12 11 43 43 H 0.97003 * 120.00249 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36505 * 265.28889 * 24 15 14 45 45 H 1.09001 * 110.36334 * 142.96994 * 24 15 14 46 46 H 1.07998 * 120.00091 * 359.97438 * 28 27 25 47 47 H 1.07996 * 120.00690 * 180.27397 * 29 28 27 48 48 H 1.07991 * 119.99827 * 179.83546 * 30 29 28 49 49 H 1.08002 * 119.99621 * 179.97438 * 31 30 29 50 50 H 1.08006 * 119.99903 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0719 -0.7816 -1.2215 5 6 3.2660 -1.5560 -0.6078 6 8 2.7956 -1.9109 0.7103 7 6 2.0694 -0.7780 1.2158 8 1 2.7344 -0.1422 1.8003 9 6 0.9227 -1.2460 2.0745 10 8 0.6975 -2.4320 2.1917 11 7 0.1475 -0.3467 2.7122 12 6 -0.9668 -0.8017 3.5473 13 1 -0.7195 -1.7427 4.0388 14 6 -2.2570 -0.9443 2.7126 15 7 -3.3698 -0.4607 3.5430 16 6 -4.6832 -0.3999 3.1605 17 1 -5.4288 -0.0268 3.8469 18 6 -5.0564 -0.8183 1.8906 19 7 -4.1478 -1.2738 1.0543 20 14 -6.8482 -0.7362 1.3690 21 1 -7.3192 0.6706 1.4361 22 1 -6.9823 -1.2377 -0.0222 23 1 -7.6676 -1.5765 2.2788 24 6 -2.8372 -0.0512 4.8552 25 6 -1.3470 0.2802 4.5926 26 1 -1.2362 1.2815 4.1764 27 6 -0.5299 0.1275 5.8496 28 6 -0.5996 -1.0433 6.5812 29 6 0.1532 -1.1852 7.7319 30 6 0.9687 -0.1526 8.1560 31 6 1.0343 1.0202 7.4271 32 6 0.2849 1.1603 6.2741 33 1 -0.3634 0.4726 0.9126 34 1 -0.3634 0.5538 -0.8656 35 1 -0.3634 -1.0266 -0.0469 36 1 2.4103 -0.0991 -2.0010 37 1 1.3200 -1.4693 -1.6087 38 1 4.1456 -0.9156 -0.5418 39 1 3.4840 -2.4504 -1.1912 40 1 0.3274 0.6018 2.6182 41 1 -2.1812 -0.3421 1.8072 42 1 -2.4163 -1.9906 2.4522 43 1 -4.4084 -1.5658 0.1667 44 1 -2.9236 -0.8683 5.5714 45 1 -3.3635 0.8310 5.2196 46 1 -1.2398 -1.8484 6.2522 47 1 0.1022 -2.1015 8.3011 48 1 1.5548 -0.2623 9.0564 49 1 1.6711 1.8271 7.7587 50 1 0.3362 2.0766 5.7047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086610544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:17 Heat of formation + Delta-G solvation = -19.629714 kcal Electronic energy + Delta-G solvation = -31589.033847 eV Core-core repulsion = 27582.073249 eV Total energy + Delta-G solvation = -4006.960599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.54339 -39.49646 -38.20542 -36.91971 -34.28731 -33.37341 -32.51037 -30.97423 -30.71497 -30.15595 -28.14030 -27.19281 -26.39881 -24.60448 -23.09319 -22.61784 -21.93398 -21.39170 -20.21118 -19.87863 -19.39862 -17.27589 -17.01355 -16.66001 -16.53773 -16.01319 -15.31310 -15.05882 -14.78723 -14.64018 -14.43614 -14.19985 -13.87617 -13.74811 -13.43662 -13.21020 -12.87572 -12.74027 -12.49792 -12.37937 -12.30277 -12.11263 -12.04459 -11.47218 -11.25448 -11.13580 -11.10179 -11.03964 -10.95847 -10.89591 -10.81164 -10.74628 -10.39147 -10.10963 -9.99959 -9.90478 -9.74554 -9.17500 -8.77767 -8.65632 -8.60655 -8.24048 -6.85808 -5.70673 -3.06087 1.51233 1.55266 2.99023 3.19946 3.40320 3.45004 3.46149 3.92770 4.07279 4.40227 4.48135 4.68584 4.75526 4.89523 4.97851 4.99913 5.08433 5.11034 5.25869 5.27630 5.32443 5.39373 5.46826 5.56574 5.58204 5.60389 5.63503 5.70698 5.72203 5.76068 5.80523 5.96811 6.06790 6.15326 6.15986 6.16802 6.22536 6.32221 6.54574 6.58581 6.59642 6.66508 6.71704 6.74019 6.79894 6.96511 7.16190 7.54972 7.57149 7.83152 7.90763 8.23296 8.63461 9.19727 9.79996 10.44147 11.39452 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006318 B = 0.005458 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4431.031493 B = 5129.001199 C = 8865.407847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.151 4.151 5 C 0.044 3.956 6 O -0.347 6.347 7 C 0.062 3.938 8 H 0.088 0.912 9 C 0.520 3.480 10 O -0.518 6.518 11 N -0.712 5.712 12 C 0.129 3.871 13 H 0.089 0.911 14 C 0.172 3.828 15 N -0.604 5.604 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.917 5.917 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.146 3.854 25 C -0.075 4.075 26 H 0.086 0.914 27 C -0.057 4.057 28 C -0.110 4.110 29 C -0.118 4.118 30 C -0.133 4.133 31 C -0.123 4.123 32 C -0.119 4.119 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.395 0.605 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.045 0.955 46 H 0.125 0.875 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.640 6.711 3.458 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.134 4.134 3 H 0.107 0.893 4 C -0.188 4.188 5 C -0.033 4.033 6 O -0.265 6.265 7 C 0.001 3.999 8 H 0.106 0.894 9 C 0.305 3.695 10 O -0.392 6.392 11 N -0.365 5.365 12 C 0.024 3.976 13 H 0.107 0.893 14 C 0.046 3.954 15 N -0.330 5.330 16 C -0.360 4.360 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.020 3.980 25 C -0.095 4.095 26 H 0.104 0.896 27 C -0.058 4.058 28 C -0.128 4.128 29 C -0.136 4.136 30 C -0.151 4.151 31 C -0.141 4.141 32 C -0.137 4.137 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.230 0.770 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.143 0.857 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.372 5.551 3.442 16.702 hybrid contribution -0.821 0.722 -0.500 1.202 sum 14.551 6.273 2.943 16.117 Atomic orbital electron populations 1.22240 0.91950 1.03951 1.03516 1.22520 0.98514 0.99318 0.93074 0.89325 1.23251 0.98415 0.99525 0.97622 1.23605 0.95971 0.99883 0.83797 1.89004 1.70664 1.35899 1.30952 1.22752 0.92910 0.88578 0.95700 0.89425 1.20121 0.82870 0.86653 0.79870 1.90726 1.70608 1.16442 1.61466 1.45976 1.31645 1.09105 1.49814 1.22516 0.87729 0.96539 0.90788 0.89313 1.21552 0.81828 0.99933 0.92054 1.44399 1.04000 1.74867 1.09768 1.18982 0.82290 1.37238 0.97511 0.90384 1.24799 0.97736 1.01029 0.96552 1.69949 1.31249 1.47973 1.07185 0.86221 0.84418 0.77650 0.77574 1.21204 1.21632 1.21158 1.21599 0.89121 0.97437 0.89861 1.21682 0.96419 0.99466 0.91939 0.89563 1.19811 0.96264 0.93825 0.95870 1.21130 0.99087 0.97716 0.94901 1.21121 0.96909 0.98760 0.96828 1.21061 0.99878 0.94090 1.00031 1.21048 0.99721 0.97646 0.95644 1.21015 0.97219 0.98546 0.96950 0.90418 0.92178 0.91263 0.90055 0.89848 0.92160 0.88743 0.77009 0.92534 0.93250 0.93671 0.95635 0.93718 0.85727 0.86366 0.86649 0.86561 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 7.84 37.15 0.29 -2.03 16 2 C -0.12 -1.33 3.64 -89.10 -0.32 -1.66 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.15 -1.59 6.71 -24.72 -0.17 -1.76 16 5 C 0.04 0.48 7.72 38.21 0.29 0.77 16 6 O -0.35 -5.40 10.74 -54.80 -0.59 -5.98 16 7 C 0.06 0.86 3.84 -27.31 -0.10 0.75 16 8 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.52 9.12 5.54 -10.98 -0.06 9.05 16 10 O -0.52 -11.69 16.21 -14.01 -0.23 -11.91 16 11 N -0.71 -11.25 3.43 -52.02 -0.18 -11.43 16 12 C 0.13 2.42 2.69 -66.09 -0.18 2.24 16 13 H 0.09 1.83 6.70 -51.93 -0.35 1.48 16 14 C 0.17 4.09 5.13 -3.06 -0.02 4.08 16 15 N -0.60 -14.91 3.39 -170.08 -0.58 -15.49 16 16 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 19 N -0.92 -26.56 10.31 55.49 0.57 -25.99 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.15 2.91 6.63 -2.53 -0.02 2.89 16 25 C -0.08 -1.23 2.88 -89.62 -0.26 -1.49 16 26 H 0.09 1.32 7.83 -51.93 -0.41 0.91 16 27 C -0.06 -0.84 5.00 -104.63 -0.52 -1.36 16 28 C -0.11 -1.63 8.31 -39.58 -0.33 -1.96 16 29 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 30 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 31 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 32 C -0.12 -1.50 9.69 -39.59 -0.38 -1.89 16 33 H 0.08 1.17 4.43 -51.93 -0.23 0.94 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.27 7.58 -51.93 -0.39 0.87 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.40 5.00 7.60 -40.82 -0.31 4.69 16 41 H 0.06 1.44 6.40 -51.93 -0.33 1.11 16 42 H 0.05 1.40 7.51 -51.93 -0.39 1.01 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.12 1.94 7.00 -52.49 -0.37 1.57 16 47 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.12 1.26 7.99 -52.48 -0.42 0.85 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -33.67 391.29 -11.07 -44.74 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.72 Total: 8.00 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -3.22 Total: -4.73 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.18 Total: -52.90 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.82 Total: -17.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.67 -11.07 -44.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086610544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.110 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds