Wall clock time and date at job start Wed Apr 1 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.86180 * 2 1 4 4 C 1.54705 * 110.94067 * 236.26201 * 2 1 3 5 5 O 1.43754 * 102.80767 * 267.13614 * 4 2 1 6 6 C 1.36002 * 109.25603 * 331.98899 * 5 4 2 7 7 C 1.39585 * 129.73007 * 198.88275 * 6 5 4 8 8 C 1.37472 * 120.42579 * 180.67614 * 7 6 5 9 9 C 1.39754 * 120.19701 * 0.56614 * 8 7 6 10 10 C 1.47607 * 120.26087 * 179.52726 * 9 8 7 11 11 O 1.21589 * 119.99905 * 179.72113 * 10 9 8 12 12 N 1.34778 * 120.00405 * 359.72336 * 10 9 8 13 13 C 1.46496 * 120.00092 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46965 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.01895 * 305.70430 * 14 13 12 16 16 C 1.53873 * 110.03127 * 67.09419 * 14 13 12 17 17 C 1.54269 * 106.59646 * 119.33247 * 16 14 13 18 18 C 1.54882 * 104.19831 * 23.61137 * 17 16 14 19 19 H 1.08998 * 110.75605 * 80.36842 * 18 17 16 20 20 N 1.46503 * 110.75736 * 203.56047 * 18 17 16 21 21 C 1.36935 * 119.99662 * 273.54478 * 20 18 17 22 22 H 1.08003 * 120.00568 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00039 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00064 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47315 * 90.00065 * 25 23 21 27 27 H 1.48509 * 109.47342 * 209.99601 * 25 23 21 28 28 H 1.48503 * 109.47319 * 329.99862 * 25 23 21 29 29 C 1.54273 * 110.07278 * 184.28319 * 14 13 12 30 30 C 1.39804 * 119.47092 * 359.25059 * 9 8 7 31 31 C 1.37306 * 119.85855 * 0.27664 * 30 9 8 32 32 H 1.09006 * 109.47152 * 296.26489 * 1 2 3 33 33 H 1.08994 * 109.47722 * 56.26854 * 1 2 3 34 34 H 1.09005 * 109.47547 * 176.27272 * 1 2 3 35 35 H 1.09003 * 110.74565 * 148.80192 * 4 2 1 36 36 H 1.09001 * 110.89838 * 25.53701 * 4 2 1 37 37 H 1.07997 * 119.78316 * 0.95527 * 7 6 5 38 38 H 1.08003 * 119.90220 * 180.27861 * 8 7 6 39 39 H 0.96998 * 119.99585 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.47140 * 60.00325 * 13 12 10 41 41 H 1.08994 * 109.47429 * 300.00342 * 13 12 10 42 42 H 1.08996 * 110.03511 * 238.61485 * 16 14 13 43 43 H 1.09002 * 110.03221 * 0.02562 * 16 14 13 44 44 H 1.09000 * 110.48429 * 142.29450 * 17 16 14 45 45 H 1.08998 * 110.48673 * 264.79629 * 17 16 14 46 46 H 0.96995 * 120.00029 * 93.54494 * 20 18 17 47 47 H 0.96999 * 120.00218 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.48533 * 335.76669 * 29 14 13 49 49 H 1.08999 * 110.48202 * 98.40596 * 29 14 13 50 50 H 1.07999 * 120.06832 * 180.25106 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0828 -0.8025 -1.2015 5 8 2.2621 -2.1181 -0.6507 6 6 2.4972 -2.0169 0.6851 7 6 3.0656 -2.9408 1.5635 8 6 3.2017 -2.6401 2.8980 9 6 2.7603 -1.4086 3.3896 10 6 2.8962 -1.0884 4.8241 11 8 2.5153 -0.0135 5.2458 12 7 3.4427 -1.9875 5.6665 13 6 3.5781 -1.6694 7.0901 14 6 4.2229 -2.8509 7.8175 15 1 3.6577 -3.7624 7.6230 16 6 5.6795 -3.0246 7.3527 17 6 6.5652 -2.8477 8.6033 18 6 5.6241 -3.1855 9.7862 19 1 5.5362 -4.2644 9.9140 20 7 6.0961 -2.5550 11.0216 21 6 7.0220 -3.1913 11.8044 22 1 7.4047 -4.1577 11.5111 23 6 7.4696 -2.5937 12.9747 24 7 8.3599 -3.2050 13.7270 25 14 6.8083 -0.9220 13.4818 26 1 5.6023 -1.1029 14.3291 27 1 7.8477 -0.1907 14.2501 28 1 6.4492 -0.1431 12.2695 29 6 4.2745 -2.5745 9.3344 30 6 2.1944 -0.4801 2.5109 31 6 2.0720 -0.7867 1.1781 32 1 -0.3634 0.4548 0.9216 33 1 -0.3634 0.5706 -0.8546 34 1 -0.3634 -1.0255 -0.0668 35 1 3.0352 -0.3906 -1.5355 36 1 1.3637 -0.8215 -2.0204 37 1 3.4047 -3.8963 1.1915 38 1 3.6468 -3.3596 3.5694 39 1 3.7463 -2.8451 5.3301 40 1 2.5929 -1.4759 7.5145 41 1 4.2040 -0.7848 7.2069 42 1 5.8211 -4.0203 6.9327 43 1 5.9270 -2.2669 6.6092 44 1 7.4068 -3.5398 8.5757 45 1 6.9202 -1.8198 8.6771 46 1 5.7527 -1.6869 11.2849 47 1 8.6724 -2.7876 14.5449 48 1 4.2575 -1.5018 9.5275 49 1 3.4442 -3.0672 9.8403 50 1 1.8538 0.4761 2.8797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086783448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:20 Heat of formation + Delta-G solvation = -41.715903 kcal Electronic energy + Delta-G solvation = -28902.861250 eV Core-core repulsion = 24894.942923 eV Total energy + Delta-G solvation = -4007.918328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79804 -40.08185 -38.37161 -37.35376 -35.12281 -34.51588 -33.45743 -31.27864 -30.84774 -30.42296 -29.00423 -27.60472 -27.25861 -25.02695 -23.43004 -23.30701 -22.71167 -21.53807 -20.69627 -19.90505 -19.44959 -18.01963 -17.71706 -17.51286 -17.10578 -16.56171 -16.05412 -15.83168 -15.10334 -14.93851 -14.80913 -14.48537 -14.21895 -14.04747 -13.90404 -13.63523 -13.43316 -13.24358 -13.04545 -13.02310 -12.80264 -12.66445 -12.42119 -12.25862 -12.19806 -11.64433 -11.35399 -11.32248 -11.12151 -11.00236 -10.84796 -10.65435 -10.58383 -10.41351 -10.24970 -10.13066 -9.87538 -9.57765 -9.45491 -9.24303 -8.89498 -8.64652 -7.24762 -5.76523 -3.11801 0.42830 0.83283 2.48423 2.73860 2.95505 3.38884 3.42161 3.43216 3.46670 3.76118 3.98445 4.30530 4.35341 4.45502 4.57744 4.60008 4.67701 4.74271 4.82288 4.83848 4.90246 4.91488 5.00053 5.09596 5.15919 5.37064 5.41650 5.47720 5.50379 5.58437 5.62398 5.62728 5.67852 5.71435 5.80400 5.83131 5.87980 5.93164 5.97857 5.98841 6.09332 6.21738 6.27408 6.31557 6.42463 6.60295 6.61500 6.79903 7.00147 7.30954 8.00480 8.02382 8.43132 9.21815 9.94610 10.14393 11.41829 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.001694 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.244189 B =16529.039861 C =17080.496390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.100 0.900 4 C 0.053 3.947 5 O -0.300 6.300 6 C 0.132 3.868 7 C -0.145 4.145 8 C -0.048 4.048 9 C -0.163 4.163 10 C 0.560 3.440 11 O -0.540 6.540 12 N -0.722 5.722 13 C 0.126 3.874 14 C -0.101 4.101 15 H 0.076 0.924 16 C -0.122 4.122 17 C -0.143 4.143 18 C 0.182 3.818 19 H 0.062 0.938 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C -0.125 4.125 30 C -0.007 4.007 31 C -0.181 4.181 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.399 0.601 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 3.051 -32.782 36.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.118 0.882 4 C -0.022 4.022 5 O -0.213 6.213 6 C 0.086 3.914 7 C -0.164 4.164 8 C -0.067 4.067 9 C -0.166 4.166 10 C 0.348 3.652 11 O -0.419 6.419 12 N -0.374 5.374 13 C 0.003 3.997 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.160 4.160 17 C -0.183 4.183 18 C 0.072 3.928 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.164 4.164 30 C -0.026 4.026 31 C -0.181 4.181 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.235 0.765 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.768 3.463 -32.476 36.267 hybrid contribution -0.130 0.924 0.277 0.974 sum -15.898 4.387 -32.200 36.178 Atomic orbital electron populations 1.21773 0.92657 1.02677 1.02764 1.21398 0.97377 1.00114 0.91027 0.88182 1.23988 1.01810 0.80030 0.96371 1.86815 1.85905 1.30178 1.18419 1.19860 0.93004 0.94452 0.84091 1.20174 1.03820 1.00386 0.92026 1.21038 0.95813 0.95310 0.94517 1.19783 1.07101 0.96107 0.93651 1.18063 0.77599 0.84062 0.85478 1.90792 1.49412 1.23501 1.78174 1.45952 1.62805 1.19363 1.09243 1.21586 1.01115 0.98303 0.78655 1.21963 0.96764 0.97204 0.96086 0.90550 1.22230 0.94111 1.00959 0.98683 1.23024 0.98726 1.01779 0.94791 1.21129 0.89811 0.96285 0.85593 0.92038 1.42735 1.50820 1.21315 1.23810 1.19082 1.14682 1.02546 1.01007 0.89221 1.24675 0.98972 0.98175 0.97360 1.69700 1.33964 1.38868 1.15678 0.86557 0.78374 0.85369 0.78277 1.21084 1.21781 1.20289 1.22604 0.99416 1.01560 0.92803 1.20331 0.93210 0.98905 0.90128 1.20669 1.05348 0.96972 0.95153 0.91581 0.91644 0.92074 0.90147 0.87229 0.84607 0.84552 0.76538 0.91359 0.91026 0.92173 0.92247 0.92106 0.91927 0.80584 0.93087 0.91412 0.91426 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.25 37.15 0.34 -0.35 16 2 C -0.08 -0.45 3.73 -90.39 -0.34 -0.79 16 3 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.05 0.26 7.54 38.05 0.29 0.55 16 5 O -0.30 -2.44 11.10 -19.75 -0.22 -2.66 16 6 C 0.13 1.13 7.04 -38.73 -0.27 0.86 16 7 C -0.15 -1.10 10.05 -39.36 -0.40 -1.50 16 8 C -0.05 -0.36 9.52 -39.29 -0.37 -0.73 16 9 C -0.16 -1.60 5.88 -104.92 -0.62 -2.21 16 10 C 0.56 6.71 7.77 -12.44 -0.10 6.61 16 11 O -0.54 -8.49 16.36 5.29 0.09 -8.41 16 12 N -0.72 -7.21 5.27 -61.33 -0.32 -7.53 16 13 C 0.13 1.45 4.70 -4.04 -0.02 1.44 16 14 C -0.10 -1.15 2.97 -89.50 -0.27 -1.42 16 15 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 16 C -0.12 -1.47 6.15 -25.61 -0.16 -1.62 16 17 C -0.14 -2.35 6.51 -25.07 -0.16 -2.52 16 18 C 0.18 3.34 3.53 -65.94 -0.23 3.11 16 19 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 20 N -0.75 -17.39 5.06 -51.50 -0.26 -17.65 16 21 C -0.24 -6.81 10.46 -15.06 -0.16 -6.97 16 22 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 25 Si 0.88 22.21 27.73 -169.99 -4.71 17.49 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 29 C -0.12 -1.81 5.97 -25.07 -0.15 -1.96 16 30 C -0.01 -0.06 9.58 -39.34 -0.38 -0.44 16 31 C -0.18 -1.49 5.61 -104.13 -0.58 -2.07 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.11 0.31 7.93 -51.93 -0.41 -0.10 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.67 6.40 -52.48 -0.34 0.33 16 39 H 0.40 2.91 6.36 -40.82 -0.26 2.65 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.36 8.34 5.59 -40.82 -0.23 8.11 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 48 H 0.07 1.01 7.74 -51.93 -0.40 0.61 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.14 1.33 7.66 -52.49 -0.40 0.93 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -34.54 401.51 -10.21 -44.75 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.94 Total: 6.53 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.67 Total: -10.00 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.19 Total: -53.75 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.13 Total: -11.07 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.54 -10.21 -44.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086783448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.035 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds