Wall clock time and date at job start Wed Apr 1 2020 03:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.86180 * 2 1 4 4 C 1.54705 * 110.94067 * 236.26201 * 2 1 3 5 5 O 1.43754 * 102.80767 * 267.13614 * 4 2 1 6 6 C 1.36002 * 109.25603 * 331.98899 * 5 4 2 7 7 C 1.39585 * 129.73007 * 198.88275 * 6 5 4 8 8 C 1.37472 * 120.42579 * 180.67614 * 7 6 5 9 9 C 1.39754 * 120.19701 * 0.56614 * 8 7 6 10 10 C 1.47607 * 120.26087 * 179.52726 * 9 8 7 11 11 O 1.21589 * 119.99905 * 179.72113 * 10 9 8 12 12 N 1.34778 * 120.00405 * 359.72336 * 10 9 8 13 13 C 1.46496 * 120.00092 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46965 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.01895 * 305.70430 * 14 13 12 16 16 C 1.53873 * 110.03127 * 67.09419 * 14 13 12 17 17 C 1.54269 * 106.59646 * 119.33247 * 16 14 13 18 18 C 1.54882 * 104.19831 * 23.61137 * 17 16 14 19 19 H 1.08998 * 110.75605 * 80.36842 * 18 17 16 20 20 N 1.46503 * 110.75736 * 203.56047 * 18 17 16 21 21 C 1.36935 * 119.99662 * 273.54478 * 20 18 17 22 22 H 1.08003 * 120.00568 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00039 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00064 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47315 * 90.00065 * 25 23 21 27 27 H 1.48509 * 109.47342 * 209.99601 * 25 23 21 28 28 H 1.48503 * 109.47319 * 329.99862 * 25 23 21 29 29 C 1.54273 * 110.07278 * 184.28319 * 14 13 12 30 30 C 1.39804 * 119.47092 * 359.25059 * 9 8 7 31 31 C 1.37306 * 119.85855 * 0.27664 * 30 9 8 32 32 H 1.09006 * 109.47152 * 296.26489 * 1 2 3 33 33 H 1.08994 * 109.47722 * 56.26854 * 1 2 3 34 34 H 1.09005 * 109.47547 * 176.27272 * 1 2 3 35 35 H 1.09003 * 110.74565 * 148.80192 * 4 2 1 36 36 H 1.09001 * 110.89838 * 25.53701 * 4 2 1 37 37 H 1.07997 * 119.78316 * 0.95527 * 7 6 5 38 38 H 1.08003 * 119.90220 * 180.27861 * 8 7 6 39 39 H 0.96998 * 119.99585 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.47140 * 60.00325 * 13 12 10 41 41 H 1.08994 * 109.47429 * 300.00342 * 13 12 10 42 42 H 1.08996 * 110.03511 * 238.61485 * 16 14 13 43 43 H 1.09002 * 110.03221 * 0.02562 * 16 14 13 44 44 H 1.09000 * 110.48429 * 142.29450 * 17 16 14 45 45 H 1.08998 * 110.48673 * 264.79629 * 17 16 14 46 46 H 0.96995 * 120.00029 * 93.54494 * 20 18 17 47 47 H 0.96999 * 120.00218 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.48533 * 335.76669 * 29 14 13 49 49 H 1.08999 * 110.48202 * 98.40596 * 29 14 13 50 50 H 1.07999 * 120.06832 * 180.25106 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0828 -0.8025 -1.2015 5 8 2.2621 -2.1181 -0.6507 6 6 2.4972 -2.0169 0.6851 7 6 3.0656 -2.9408 1.5635 8 6 3.2017 -2.6401 2.8980 9 6 2.7603 -1.4086 3.3896 10 6 2.8962 -1.0884 4.8241 11 8 2.5153 -0.0135 5.2458 12 7 3.4427 -1.9875 5.6665 13 6 3.5781 -1.6694 7.0901 14 6 4.2229 -2.8509 7.8175 15 1 3.6577 -3.7624 7.6230 16 6 5.6795 -3.0246 7.3527 17 6 6.5652 -2.8477 8.6033 18 6 5.6241 -3.1855 9.7862 19 1 5.5362 -4.2644 9.9140 20 7 6.0961 -2.5550 11.0216 21 6 7.0220 -3.1913 11.8044 22 1 7.4047 -4.1577 11.5111 23 6 7.4696 -2.5937 12.9747 24 7 8.3599 -3.2050 13.7270 25 14 6.8083 -0.9220 13.4818 26 1 5.6023 -1.1029 14.3291 27 1 7.8477 -0.1907 14.2501 28 1 6.4492 -0.1431 12.2695 29 6 4.2745 -2.5745 9.3344 30 6 2.1944 -0.4801 2.5109 31 6 2.0720 -0.7867 1.1781 32 1 -0.3634 0.4548 0.9216 33 1 -0.3634 0.5706 -0.8546 34 1 -0.3634 -1.0255 -0.0668 35 1 3.0352 -0.3906 -1.5355 36 1 1.3637 -0.8215 -2.0204 37 1 3.4047 -3.8963 1.1915 38 1 3.6468 -3.3596 3.5694 39 1 3.7463 -2.8451 5.3301 40 1 2.5929 -1.4759 7.5145 41 1 4.2040 -0.7848 7.2069 42 1 5.8211 -4.0203 6.9327 43 1 5.9270 -2.2669 6.6092 44 1 7.4068 -3.5398 8.5757 45 1 6.9202 -1.8198 8.6771 46 1 5.7527 -1.6869 11.2849 47 1 8.6724 -2.7876 14.5449 48 1 4.2575 -1.5018 9.5275 49 1 3.4442 -3.0672 9.8403 50 1 1.8538 0.4761 2.8797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086783448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:19 Heat of formation + Delta-G solvation = -64.004051 kcal Electronic energy + Delta-G solvation = -28903.827737 eV Core-core repulsion = 24894.942923 eV Total energy + Delta-G solvation = -4008.884814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34575 -40.96163 -39.53464 -38.06438 -36.44971 -35.16239 -34.87313 -33.05572 -31.64640 -31.15439 -30.05405 -28.97685 -27.67183 -26.13179 -24.67159 -24.08637 -23.91329 -22.08701 -21.70259 -21.12030 -20.59337 -19.56066 -18.74389 -18.25461 -17.77572 -17.14947 -16.97443 -16.77828 -16.59724 -16.12083 -15.91601 -15.50580 -15.10268 -14.83176 -14.66147 -14.57224 -14.41108 -14.26382 -14.13663 -14.03860 -13.92431 -13.54510 -13.45502 -13.24481 -13.09671 -12.75194 -12.69588 -12.31723 -12.10661 -12.04402 -11.95773 -11.84914 -11.84112 -11.71331 -11.62765 -11.52401 -11.25387 -11.05915 -10.93360 -10.16148 -10.03887 -9.27147 -9.25421 -8.01814 -5.33993 -0.24155 0.24032 1.37960 1.40289 1.47539 1.73693 2.09393 2.24559 2.48577 2.74059 3.29010 3.29845 3.50451 3.57081 3.64833 3.73103 3.79251 3.83347 4.00081 4.10346 4.12556 4.17324 4.38461 4.40524 4.46902 4.49003 4.59625 4.62509 4.64796 4.65085 4.74971 4.76428 4.79385 4.90064 4.96404 5.01325 5.07243 5.07722 5.12270 5.21523 5.22911 5.24256 5.27940 5.33652 5.41606 5.46736 5.55515 5.57786 5.79552 6.05259 6.23643 6.52280 7.09600 7.18335 7.88078 8.05417 9.19820 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.001694 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.244189 B =16529.039861 C =17080.496390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.111 0.889 4 C 0.050 3.950 5 O -0.313 6.313 6 C 0.123 3.877 7 C -0.149 4.149 8 C -0.038 4.038 9 C -0.180 4.180 10 C 0.560 3.440 11 O -0.587 6.587 12 N -0.708 5.708 13 C 0.133 3.867 14 C -0.085 4.085 15 H 0.105 0.895 16 C -0.110 4.110 17 C -0.141 4.141 18 C 0.166 3.834 19 H 0.054 0.946 20 N -0.751 5.751 21 C -0.227 4.227 22 H 0.058 0.942 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.953 3.047 26 H -0.278 1.278 27 H -0.298 1.298 28 H -0.255 1.255 29 C -0.118 4.118 30 C -0.021 4.021 31 C -0.188 4.188 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.415 0.585 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.364 0.636 47 H 0.257 0.743 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 3.032 -35.586 39.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.129 0.871 4 C -0.024 4.024 5 O -0.227 6.227 6 C 0.076 3.924 7 C -0.167 4.167 8 C -0.057 4.057 9 C -0.183 4.183 10 C 0.349 3.651 11 O -0.469 6.469 12 N -0.360 5.360 13 C 0.009 3.991 14 C -0.104 4.104 15 H 0.123 0.877 16 C -0.148 4.148 17 C -0.181 4.181 18 C 0.058 3.942 19 H 0.072 0.928 20 N -0.393 5.393 21 C -0.358 4.358 22 H 0.076 0.924 23 C -0.257 4.257 24 N -0.635 5.635 25 Si 0.781 3.219 26 H -0.204 1.204 27 H -0.225 1.225 28 H -0.180 1.180 29 C -0.157 4.157 30 C -0.040 4.040 31 C -0.189 4.189 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.254 0.746 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.331 3.412 -35.354 39.521 hybrid contribution 0.357 0.840 1.031 1.377 sum -16.974 4.251 -34.323 38.526 Atomic orbital electron populations 1.21758 0.92226 1.02328 1.03259 1.21509 0.97728 1.00529 0.90259 0.87116 1.24248 1.03128 0.78628 0.96431 1.86796 1.85797 1.31926 1.18164 1.20157 0.92928 0.94708 0.84559 1.20490 1.03284 1.01050 0.91913 1.21288 0.94775 0.94654 0.94971 1.19707 1.08790 0.97442 0.92406 1.18401 0.76820 0.83501 0.86417 1.90766 1.51570 1.25476 1.79057 1.45770 1.62038 1.19740 1.08423 1.21404 1.00576 0.97651 0.79479 1.21841 0.96693 0.98267 0.93585 0.87682 1.22162 0.93156 1.02869 0.96567 1.22887 0.98669 1.00208 0.96334 1.21449 0.92507 0.95919 0.84303 0.92805 1.42780 1.50073 1.21415 1.25031 1.19059 1.14393 1.01271 1.01066 0.92430 1.25477 0.99933 1.02482 0.97816 1.69879 1.36232 1.40990 1.16445 0.85434 0.77467 0.80578 0.78441 1.20399 1.22460 1.17968 1.22517 0.97085 1.01015 0.95062 1.20345 0.94019 0.98743 0.90927 1.20897 1.05145 0.97615 0.95195 0.92489 0.89544 0.93010 0.88932 0.84989 0.82526 0.81674 0.74646 0.91705 0.92735 0.89595 0.91241 0.93644 0.93633 0.80301 0.93462 0.91865 0.90391 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.25 71.98 0.67 -0.52 16 2 C -0.08 -0.80 3.73 -10.65 -0.04 -0.84 16 3 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 4 C 0.05 0.38 7.54 72.56 0.55 0.93 16 5 O -0.31 -4.51 11.10 -93.57 -1.04 -5.55 16 6 C 0.12 1.90 7.04 22.82 0.16 2.06 16 7 C -0.15 -1.89 10.05 22.41 0.23 -1.66 16 8 C -0.04 -0.48 9.52 22.46 0.21 -0.26 16 9 C -0.18 -3.32 5.88 -20.06 -0.12 -3.44 16 10 C 0.56 12.81 7.77 86.72 0.67 13.49 16 11 O -0.59 -18.59 16.36 -4.00 -0.07 -18.65 16 12 N -0.71 -12.33 5.27 -466.21 -2.46 -14.79 16 13 C 0.13 2.75 4.70 86.38 0.41 3.15 16 14 C -0.08 -1.65 2.97 -10.07 -0.03 -1.68 16 15 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 16 C -0.11 -2.30 6.15 31.32 0.19 -2.11 16 17 C -0.14 -4.50 6.51 31.67 0.21 -4.29 16 18 C 0.17 5.96 3.53 46.28 0.16 6.12 16 19 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 20 N -0.75 -34.82 5.06 -316.85 -1.60 -36.43 16 21 C -0.23 -12.95 10.46 84.03 0.88 -12.07 16 22 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 24 N -0.98 -63.66 13.97 21.65 0.30 -63.35 16 25 Si 0.95 46.25 27.73 68.60 1.90 48.16 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.25 -11.29 6.52 99.48 0.65 -10.64 16 29 C -0.12 -3.16 5.97 31.67 0.19 -2.97 16 30 C -0.02 -0.40 9.58 22.43 0.21 -0.19 16 31 C -0.19 -2.93 5.61 -19.54 -0.11 -3.04 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.13 0.39 7.93 -2.39 -0.02 0.37 16 37 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.17 0.93 6.40 -2.91 -0.02 0.92 16 39 H 0.42 4.43 6.36 -92.71 -0.59 3.84 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.37 7.60 -2.39 -0.02 1.36 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.36 16.37 5.59 -92.71 -0.52 15.86 16 47 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 48 H 0.06 1.78 7.74 -2.39 -0.02 1.76 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.13 2.58 7.66 -2.91 -0.02 2.56 16 Total: -1.00 -78.15 401.51 1.74 -76.41 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.21 Total: 24.97 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.91 Total: -10.77 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.76 Total: -114.57 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.10 Total: -24.20 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.90 Total: 48.16 kcal Total: -78.15 1.74 -76.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086783448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.406 kcal (2) G-P(sol) polarization free energy of solvation -78.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds