Wall clock time and date at job start Wed Apr 1 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87427 * 2 1 4 4 C 1.54325 * 109.87989 * 238.98767 * 2 1 3 5 5 H 1.09000 * 110.72095 * 336.77436 * 4 2 1 6 6 N 1.46502 * 110.72322 * 99.87110 * 4 2 1 7 7 C 1.34772 * 119.99881 * 204.52389 * 6 4 2 8 8 O 1.21277 * 120.00410 * 4.90187 * 7 6 4 9 9 C 1.50697 * 119.99760 * 184.90002 * 7 6 4 10 10 H 1.09003 * 110.35754 * 135.26463 * 9 7 6 11 11 O 1.43696 * 110.29189 * 13.07158 * 9 7 6 12 12 C 1.43233 * 109.99983 * 265.47541 * 11 9 7 13 13 C 1.54385 * 107.58473 * 358.32247 * 12 11 9 14 14 C 1.54953 * 110.31080 * 257.40382 * 9 7 6 15 15 H 1.09000 * 111.12792 * 200.42848 * 14 9 7 16 16 C 1.50696 * 111.12586 * 324.55285 * 14 9 7 17 17 C 1.38232 * 119.99911 * 260.13894 * 16 14 9 18 18 C 1.38236 * 119.99802 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38243 * 119.99737 * 0.27756 * 19 18 17 21 21 C 1.38232 * 119.99740 * 359.50620 * 20 19 18 22 22 C 1.55165 * 102.94144 * 218.23604 * 4 2 1 23 23 C 1.54912 * 101.58027 * 35.50182 * 22 4 2 24 24 N 1.47020 * 110.01135 * 121.10088 * 2 1 3 25 25 C 1.36927 * 125.64958 * 298.46433 * 24 2 1 26 26 H 1.08002 * 120.00328 * 349.67346 * 25 24 2 27 27 C 1.38819 * 120.00428 * 169.66987 * 25 24 2 28 28 N 1.31619 * 119.99287 * 2.78555 * 27 25 24 29 29 Si 1.86800 * 120.00307 * 182.77835 * 27 25 24 30 30 H 1.48492 * 109.47032 * 94.98645 * 29 27 25 31 31 H 1.48503 * 109.47003 * 214.99053 * 29 27 25 32 32 H 1.48504 * 109.47057 * 334.98576 * 29 27 25 33 33 H 1.08998 * 109.46968 * 181.01520 * 1 2 3 34 34 H 1.09004 * 109.47224 * 301.01297 * 1 2 3 35 35 H 1.09005 * 109.47261 * 61.01392 * 1 2 3 36 36 H 0.97001 * 119.99679 * 24.52897 * 6 4 2 37 37 H 1.09001 * 109.83310 * 238.81380 * 12 11 9 38 38 H 1.08998 * 109.83273 * 117.84006 * 12 11 9 39 39 H 1.09005 * 110.84385 * 220.44983 * 13 12 11 40 40 H 1.09003 * 111.02003 * 96.92050 * 13 12 11 41 41 H 1.07997 * 119.99882 * 359.97338 * 17 16 14 42 42 H 1.08007 * 119.99873 * 179.97438 * 18 17 16 43 43 H 1.07997 * 120.00323 * 179.97438 * 19 18 17 44 44 H 1.07995 * 119.99935 * 179.72682 * 20 19 18 45 45 H 1.08003 * 119.99718 * 180.27459 * 21 20 19 46 46 H 1.09000 * 111.00456 * 153.57239 * 22 4 2 47 47 H 1.08997 * 110.99959 * 277.42605 * 22 4 2 48 48 H 1.08999 * 110.36468 * 204.15164 * 23 22 4 49 49 H 1.09002 * 110.45941 * 81.87890 * 23 22 4 50 50 H 0.97004 * 119.99814 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3049 -1.4433 -1.6206 6 7 2.4520 0.1992 -2.2887 7 6 2.4630 -0.1874 -3.5797 8 8 2.0599 -1.2894 -3.8862 9 6 2.9761 0.7496 -4.6425 10 1 3.6321 0.2182 -5.3320 11 8 3.6724 1.8529 -4.0402 12 6 2.7818 2.9624 -3.8741 13 6 1.4111 2.5509 -4.4533 14 6 1.7932 1.3901 -5.4117 15 1 2.1149 1.7708 -6.3810 16 6 0.6541 0.4155 -5.5654 17 6 0.4830 -0.2653 -6.7563 18 6 -0.5616 -1.1596 -6.8972 19 6 -1.4348 -1.3736 -5.8471 20 6 -1.2667 -0.6889 -4.6579 21 6 -0.2195 0.2021 -4.5156 22 6 3.2900 -1.5101 -0.6955 23 6 2.8195 -1.8771 0.7341 24 7 2.0331 -0.7136 1.1829 25 6 1.8079 -0.3571 2.4856 26 1 1.3616 0.5994 2.7144 27 6 2.1532 -1.2251 3.5124 28 7 2.7471 -2.3670 3.2370 29 14 1.7753 -0.7724 5.2849 30 1 0.4802 -1.3785 5.6852 31 1 2.8549 -1.2836 6.1673 32 1 1.6907 0.7048 5.4113 33 1 -0.3633 -1.0275 0.0182 34 1 -0.3634 0.5295 0.8808 35 1 -0.3634 0.4980 -0.8990 36 1 2.7071 1.1045 -2.0513 37 1 3.1657 3.8287 -4.4128 38 1 2.6797 3.1994 -2.8151 39 1 0.9592 3.3760 -5.0040 40 1 0.7434 2.2004 -3.6662 41 1 1.1653 -0.0984 -7.5765 42 1 -0.6956 -1.6913 -7.8277 43 1 -2.2511 -2.0721 -5.9573 44 1 -1.9514 -0.8528 -3.8391 45 1 -0.0856 0.7337 -3.5850 46 1 3.4887 -2.4062 -1.2834 47 1 4.1664 -0.8628 -0.6644 48 1 3.6778 -2.0300 1.3883 49 1 2.1960 -2.7709 0.7124 50 1 2.9888 -2.9734 3.9545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088913448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:41 Heat of formation + Delta-G solvation = -41.454641 kcal Electronic energy + Delta-G solvation = -31874.252123 eV Core-core repulsion = 27866.345124 eV Total energy + Delta-G solvation = -4007.906999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07086 -40.15591 -39.42417 -38.78655 -35.55754 -34.44944 -33.73546 -32.08918 -31.86093 -31.16099 -30.58396 -29.69149 -26.69070 -25.87515 -24.72626 -23.91491 -23.09812 -22.27128 -21.62856 -21.52592 -20.81630 -18.79610 -18.67677 -17.92948 -17.65386 -17.18823 -16.65760 -16.17062 -16.03811 -15.78073 -15.62326 -15.54198 -15.42554 -15.29095 -14.74568 -14.39460 -14.22380 -14.06124 -13.97121 -13.79845 -13.51367 -13.22115 -13.13858 -12.92657 -12.76506 -12.68334 -12.59970 -12.46995 -12.27492 -12.22739 -12.07704 -11.96195 -11.83728 -11.76349 -11.64948 -11.49867 -11.20269 -10.70964 -10.33902 -9.99073 -9.71777 -9.49038 -8.87712 -7.82343 -5.21961 0.46762 0.58305 1.47143 1.48702 1.57449 1.59807 2.13945 2.51552 2.74908 2.87754 3.34758 3.49464 3.50452 3.62888 3.75235 3.84638 3.90394 3.94297 4.03339 4.15026 4.18215 4.20639 4.26608 4.32158 4.47149 4.47981 4.58134 4.60947 4.66196 4.69403 4.77884 4.79370 4.88288 4.94070 4.97824 5.02882 5.12572 5.13898 5.18488 5.20037 5.36880 5.50735 5.56399 5.61134 5.63028 5.68048 5.69959 5.73272 5.79428 6.18385 6.23876 6.60222 7.08943 7.27272 7.76794 8.42969 9.26180 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.003175 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.088314 B = 8816.855342 C = 9443.134632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 H 0.048 0.952 4 C 0.155 3.845 5 H 0.078 0.922 6 N -0.700 5.700 7 C 0.503 3.497 8 O -0.562 6.562 9 C 0.076 3.924 10 H 0.136 0.864 11 O -0.378 6.378 12 C 0.036 3.964 13 C -0.154 4.154 14 C -0.058 4.058 15 H 0.133 0.867 16 C -0.081 4.081 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.177 3.823 24 N -0.613 5.613 25 C -0.231 4.231 26 H 0.084 0.916 27 C -0.065 4.065 28 N -0.950 5.950 29 Si 0.976 3.024 30 H -0.290 1.290 31 H -0.297 1.297 32 H -0.265 1.265 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.408 0.592 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.053 0.947 49 H -0.011 1.011 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 11.902 -23.050 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.046 3.954 3 H 0.065 0.935 4 C 0.049 3.951 5 H 0.097 0.903 6 N -0.352 5.352 7 C 0.289 3.711 8 O -0.440 6.440 9 C 0.015 3.985 10 H 0.153 0.847 11 O -0.297 6.297 12 C -0.040 4.040 13 C -0.191 4.191 14 C -0.077 4.077 15 H 0.151 0.849 16 C -0.082 4.082 17 C -0.132 4.132 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.181 4.181 23 C 0.052 3.948 24 N -0.338 5.338 25 C -0.360 4.360 26 H 0.102 0.898 27 C -0.258 4.258 28 N -0.599 5.599 29 Si 0.805 3.195 30 H -0.218 1.218 31 H -0.223 1.223 32 H -0.189 1.189 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.245 0.755 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.007 0.993 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.957 11.076 -22.991 25.825 hybrid contribution -0.285 -0.262 1.673 1.717 sum -4.243 10.814 -21.318 24.277 Atomic orbital electron populations 1.22084 0.96528 1.00552 1.01023 1.21173 0.93443 0.94872 0.85890 0.93466 1.21653 0.95905 0.90899 0.86629 0.90342 1.45882 1.67867 1.15771 1.05679 1.21402 0.77401 0.88216 0.84043 1.90732 1.47966 1.23291 1.82028 1.23331 0.95281 0.87841 0.92014 0.84675 1.88548 1.36012 1.22987 1.82189 1.23497 0.88641 0.89786 1.02040 1.23419 0.97865 0.98687 0.99174 1.21785 0.91126 0.93542 1.01265 0.84864 1.19521 0.95983 0.98183 0.94465 1.21259 0.98226 0.96329 0.97418 1.21395 0.95200 0.98491 0.99515 1.21385 1.00266 0.99639 0.93598 1.21273 0.98653 0.97218 0.98200 1.21080 0.95247 0.98551 0.98186 1.23225 0.97889 0.99937 0.97066 1.21254 0.94496 0.88268 0.90807 1.44689 1.58944 1.29273 1.00917 1.19358 1.34526 1.00336 0.81766 0.89774 1.25668 1.01653 0.96396 1.02074 1.70145 1.46798 1.11665 1.31313 0.85090 0.76721 0.78001 0.79712 1.21752 1.22343 1.18927 0.94827 0.93337 0.91262 0.75539 0.88103 0.90419 0.86704 0.90694 0.83879 0.84099 0.85004 0.86339 0.86841 0.91772 0.91277 0.92835 0.99253 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.14 71.98 0.66 -4.50 16 2 C 0.15 6.03 3.47 45.34 0.16 6.19 16 3 H 0.05 1.76 7.71 -2.39 -0.02 1.74 16 4 C 0.16 5.64 2.88 46.18 0.13 5.78 16 5 H 0.08 3.15 7.21 -2.39 -0.02 3.14 16 6 N -0.70 -20.15 5.09 -436.91 -2.23 -22.38 16 7 C 0.50 14.25 5.11 87.66 0.45 14.70 16 8 O -0.56 -20.08 14.80 -3.02 -0.04 -20.12 16 9 C 0.08 1.56 3.91 30.52 0.12 1.68 16 10 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 11 O -0.38 -7.33 10.22 -148.98 -1.52 -8.85 16 12 C 0.04 0.48 7.05 72.45 0.51 0.99 16 13 C -0.15 -1.96 6.10 31.86 0.19 -1.77 16 14 C -0.06 -0.90 3.21 -10.08 -0.03 -0.93 16 15 H 0.13 1.33 8.09 -2.39 -0.02 1.31 16 16 C -0.08 -1.67 3.93 -19.87 -0.08 -1.74 16 17 C -0.11 -2.16 9.71 22.27 0.22 -1.95 16 18 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 19 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 20 C -0.14 -3.33 10.05 22.27 0.22 -3.10 16 21 C -0.11 -2.71 6.87 22.27 0.15 -2.55 16 22 C -0.14 -5.78 6.77 31.99 0.22 -5.57 16 23 C 0.18 9.07 5.55 86.85 0.48 9.55 16 24 N -0.61 -30.98 3.13 -668.25 -2.09 -33.07 16 25 C -0.23 -12.64 9.87 84.04 0.83 -11.81 16 26 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 27 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 28 N -0.95 -57.34 10.36 21.65 0.22 -57.12 16 29 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 30 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 31 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 32 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.80 8.05 -2.38 -0.02 1.78 16 35 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.41 10.31 6.39 -92.71 -0.59 9.71 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 39 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 1.17 5.66 -2.39 -0.01 1.16 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.11 2.73 5.79 -2.91 -0.02 2.71 16 46 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.05 3.07 6.51 -2.39 -0.02 3.06 16 49 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -71.08 390.40 1.86 -69.22 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.35 Total: 27.94 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.14 Total: -3.15 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.09 Total: -112.56 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.57 Total: -28.98 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.08 1.86 -69.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088913448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.769 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds