Wall clock time and date at job start Wed Apr 1 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87213 * 2 1 4 4 C 1.54318 * 109.88284 * 238.82154 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.75229 * 4 2 1 6 6 N 1.46504 * 110.71949 * 100.02781 * 4 2 1 7 7 C 1.34773 * 119.99769 * 205.00076 * 6 4 2 8 8 O 1.21593 * 120.00413 * 359.97438 * 7 6 4 9 9 C 1.47540 * 119.99800 * 179.97438 * 7 6 4 10 10 C 1.39523 * 120.05313 * 0.02562 * 9 7 6 11 11 C 1.37789 * 120.18416 * 179.97438 * 10 9 7 12 12 C 1.38646 * 119.97653 * 359.83155 * 11 10 9 13 13 C 1.37656 * 120.32049 * 0.02562 * 12 11 10 14 14 C 1.38882 * 120.86978 * 0.06612 * 13 12 11 15 15 O 1.35858 * 111.29651 * 179.31839 * 14 13 12 16 16 C 1.43776 * 109.23595 * 19.60335 * 15 14 13 17 17 C 1.51674 * 132.14151 * 180.89906 * 13 12 11 18 18 C 1.53000 * 110.94127 * 282.55575 * 17 13 12 19 19 C 1.53001 * 110.94345 * 46.24374 * 17 13 12 20 20 C 1.55160 * 102.94100 * 218.38852 * 4 2 1 21 21 C 1.54909 * 101.58106 * 35.50559 * 20 4 2 22 22 N 1.47026 * 109.88078 * 121.01151 * 2 1 3 23 23 C 1.36933 * 125.65326 * 298.09502 * 22 2 1 24 24 H 1.08005 * 119.99541 * 359.97438 * 23 22 2 25 25 C 1.38813 * 120.00564 * 180.02562 * 23 22 2 26 26 N 1.31616 * 119.99514 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00305 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47209 * 89.99775 * 27 25 23 29 29 H 1.48501 * 109.47422 * 209.99954 * 27 25 23 30 30 H 1.48504 * 109.47192 * 329.99911 * 27 25 23 31 31 H 1.09004 * 109.46790 * 300.43693 * 1 2 3 32 32 H 1.08999 * 109.46948 * 60.43728 * 1 2 3 33 33 H 1.08998 * 109.46799 * 180.44052 * 1 2 3 34 34 H 0.96990 * 119.99803 * 25.00022 * 6 4 2 35 35 H 1.07993 * 119.91062 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.01557 * 179.80497 * 11 10 9 37 37 H 1.07997 * 119.83984 * 179.97438 * 12 11 10 38 38 H 1.09002 * 110.75379 * 90.43679 * 16 15 14 39 39 H 1.08999 * 110.75531 * 213.61731 * 16 15 14 40 40 H 1.09001 * 109.47435 * 59.99606 * 18 17 13 41 41 H 1.09001 * 109.47642 * 179.97438 * 18 17 13 42 42 H 1.09005 * 109.47160 * 299.99614 * 18 17 13 43 43 H 1.08997 * 109.46663 * 60.00023 * 19 17 13 44 44 H 1.08998 * 109.47593 * 180.02562 * 19 17 13 45 45 H 1.09003 * 109.46973 * 300.00308 * 19 17 13 46 46 H 1.09006 * 111.00068 * 153.57567 * 20 4 2 47 47 H 1.08996 * 111.00195 * 277.42551 * 20 4 2 48 48 H 1.08996 * 110.36158 * 204.14752 * 21 20 4 49 49 H 1.09002 * 110.36956 * 81.83034 * 21 20 4 50 50 H 0.97002 * 119.99999 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2416 5 1 1.3052 -1.4483 -1.6161 6 7 2.4555 0.1928 -2.2877 7 6 2.4582 -0.1934 -3.5789 8 8 2.1286 -1.3256 -3.8756 9 6 2.8612 0.7575 -4.6325 10 6 3.2401 2.0568 -4.2934 11 6 3.6175 2.9469 -5.2751 12 6 3.6244 2.5509 -6.6038 13 6 3.2552 1.2706 -6.9493 14 6 2.8688 0.3542 -5.9798 15 8 2.5322 -0.8391 -6.5351 16 6 3.1047 -0.9276 -7.8509 17 6 3.1819 0.5583 -8.2864 18 6 1.9336 0.9811 -9.0635 19 6 4.4470 0.8089 -9.1096 20 6 3.2877 -1.5152 -0.6901 21 6 2.8145 -1.8783 0.7396 22 7 2.0300 -0.7123 1.1850 23 6 1.8087 -0.3496 2.4867 24 1 1.2218 0.5292 2.7101 25 6 2.3394 -1.1106 3.5193 26 7 3.0550 -2.1812 3.2470 27 14 2.0380 -0.6153 5.2949 28 1 0.7967 -1.2656 5.7864 29 1 3.1871 -1.0465 6.1310 30 1 1.8906 0.8600 5.3792 31 1 -0.3633 0.5206 0.8861 32 1 -0.3633 0.5070 -0.8939 33 1 -0.3633 -1.0276 0.0079 34 1 2.7188 1.0958 -2.0511 35 1 3.2378 2.3656 -3.2586 36 1 3.9073 3.9529 -5.0099 37 1 3.9201 3.2505 -7.3715 38 1 4.0962 -1.3790 -7.8113 39 1 2.4524 -1.4901 -8.5190 40 1 1.9627 2.0563 -9.2407 41 1 1.9051 0.4565 -10.0186 42 1 1.0439 0.7322 -8.4851 43 1 5.3149 0.4396 -8.5634 44 1 4.3689 0.2877 -10.0637 45 1 4.5583 1.8784 -9.2883 46 1 3.4852 -2.4129 -1.2761 47 1 4.1654 -0.8697 -0.6591 48 1 3.6716 -2.0318 1.3952 49 1 2.1887 -2.7705 0.7169 50 1 3.4262 -2.7128 3.9685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089084699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:17 Heat of formation + Delta-G solvation = -13.968565 kcal Electronic energy + Delta-G solvation = -30475.700713 eV Core-core repulsion = 26468.985600 eV Total energy + Delta-G solvation = -4006.715113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71682 -39.56170 -37.74497 -37.19181 -35.36470 -33.97187 -32.13130 -30.82337 -30.28414 -30.04277 -28.47331 -27.80358 -26.79717 -25.15410 -23.99376 -23.73566 -22.38587 -21.26300 -20.16174 -20.00191 -19.20976 -17.48137 -17.22895 -16.79883 -16.57128 -16.21103 -15.64261 -15.34624 -14.76160 -14.59508 -14.42638 -14.03642 -14.00555 -13.82309 -13.63569 -13.35454 -13.24092 -12.99082 -12.75831 -12.54043 -12.36271 -12.10290 -11.95814 -11.88184 -11.83150 -11.51843 -11.34027 -11.20707 -11.10525 -10.92564 -10.84545 -10.80297 -10.50772 -10.36592 -10.07805 -9.71756 -9.60614 -9.49100 -9.19340 -8.65089 -8.55085 -8.35974 -6.85202 -5.63449 -3.06214 0.69225 1.07414 2.88401 3.07813 3.37020 3.40947 3.46124 3.47696 3.72873 3.86377 4.12733 4.45807 4.49496 4.52369 4.67359 4.74513 4.94667 5.03102 5.10108 5.13852 5.14913 5.22747 5.31983 5.37516 5.41438 5.44892 5.45241 5.59092 5.61917 5.67593 5.72861 5.81909 5.87783 5.93926 6.05438 6.13122 6.16920 6.29764 6.31288 6.36749 6.40798 6.58885 6.65969 6.76950 6.91294 6.93439 7.17091 7.55478 7.64592 7.80921 7.87913 8.36917 8.51288 9.22614 9.83555 10.47924 11.39867 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.002262 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.942557 B =12375.979848 C =12701.225353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.713 5.713 7 C 0.555 3.445 8 O -0.527 6.527 9 C -0.153 4.153 10 C -0.052 4.052 11 C -0.157 4.157 12 C -0.045 4.045 13 C -0.178 4.178 14 C 0.170 3.830 15 O -0.273 6.273 16 C 0.051 3.949 17 C -0.053 4.053 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.219 4.219 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.395 0.605 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.109 0.891 49 H 0.015 0.985 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 10.301 -25.898 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.112 0.888 6 N -0.364 5.364 7 C 0.341 3.659 8 O -0.404 6.404 9 C -0.157 4.157 10 C -0.071 4.071 11 C -0.175 4.175 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.122 3.878 15 O -0.185 6.185 16 C -0.024 4.024 17 C -0.053 4.053 18 C -0.191 4.191 19 C -0.193 4.193 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.347 4.347 24 H 0.095 0.905 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.230 0.770 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.127 0.873 49 H 0.033 0.967 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.374 9.185 -25.781 27.471 hybrid contribution -0.030 0.752 0.949 1.211 sum 2.344 9.936 -24.832 26.849 Atomic orbital electron populations 1.22240 0.97895 1.01421 0.99910 1.20994 0.92618 0.94740 0.86955 0.94724 1.22151 0.97687 0.90816 0.86178 0.88765 1.45963 1.68353 1.16142 1.05921 1.18015 0.78226 0.87230 0.82394 1.90818 1.47552 1.19814 1.82245 1.19372 1.10234 0.95730 0.90336 1.21137 0.94717 0.91065 1.00161 1.20948 1.04136 1.00277 0.92183 1.20412 0.95697 0.93767 0.96421 1.20690 1.07631 0.95318 0.94205 1.19450 0.91231 0.85259 0.91818 1.87029 1.67999 1.33689 1.29748 1.24173 0.99935 0.95937 0.82387 1.20880 0.97769 0.93773 0.92873 1.21772 0.95984 1.01885 0.99458 1.21782 0.95612 1.02469 0.99400 1.23406 0.96782 0.99370 0.99733 1.21947 0.97337 0.88384 0.89535 1.44489 1.59294 1.28197 1.00055 1.19021 1.27233 1.07947 0.80545 0.90474 1.24790 1.00439 0.97410 0.98030 1.69801 1.39266 1.17756 1.30107 0.86083 0.77226 0.77698 0.84531 1.21666 1.21699 1.20743 0.92722 0.94331 0.92933 0.76973 0.84615 0.84831 0.85609 0.90110 0.87452 0.91813 0.91722 0.91938 0.91997 0.91772 0.91830 0.92019 0.92014 0.87349 0.96744 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.14 37.16 0.34 -2.63 16 2 C 0.16 3.18 3.48 -66.95 -0.23 2.95 16 3 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 4 C 0.14 2.60 2.84 -66.09 -0.19 2.42 16 5 H 0.09 1.96 7.26 -51.93 -0.38 1.58 16 6 N -0.71 -11.34 5.13 -53.06 -0.27 -11.62 16 7 C 0.55 9.47 7.76 -12.47 -0.10 9.37 16 8 O -0.53 -11.06 15.51 -10.30 -0.16 -11.22 16 9 C -0.15 -2.12 5.89 -104.72 -0.62 -2.74 16 10 C -0.05 -0.54 9.51 -39.27 -0.37 -0.92 16 11 C -0.16 -1.33 10.05 -39.60 -0.40 -1.73 16 12 C -0.04 -0.37 9.91 -39.64 -0.39 -0.77 16 13 C -0.18 -1.80 5.04 -104.12 -0.53 -2.33 16 14 C 0.17 2.31 6.72 -38.44 -0.26 2.06 16 15 O -0.27 -3.94 10.13 -34.87 -0.35 -4.30 16 16 C 0.05 0.47 7.10 38.23 0.27 0.74 16 17 C -0.05 -0.41 1.03 -154.10 -0.16 -0.57 16 18 C -0.13 -0.90 8.66 37.16 0.32 -0.58 16 19 C -0.14 -0.77 8.54 37.16 0.32 -0.45 16 20 C -0.15 -3.15 6.77 -24.58 -0.17 -3.32 16 21 C 0.15 3.80 5.89 -2.53 -0.01 3.78 16 22 N -0.60 -15.00 3.13 -162.57 -0.51 -15.51 16 23 C -0.22 -5.99 9.88 -15.06 -0.15 -6.14 16 24 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 25 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 26 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 27 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.05 1.06 8.03 -51.93 -0.42 0.65 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.40 5.17 6.38 -40.82 -0.26 4.91 16 35 H 0.14 1.15 6.37 -52.49 -0.33 0.81 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 39 H 0.11 0.77 7.94 -51.93 -0.41 0.36 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.38 8.05 -51.93 -0.42 -0.04 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.11 2.99 5.87 -51.93 -0.31 2.69 16 49 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -33.80 397.74 -10.13 -43.93 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.95 Total: 3.29 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.42 Total: -1.26 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.22 Total: -53.41 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.51 Total: -15.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.80 -10.13 -43.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089084699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.961 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds