Wall clock time and date at job start Wed Apr 1 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87213 * 2 1 4 4 C 1.54318 * 109.88284 * 238.82154 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.75229 * 4 2 1 6 6 N 1.46504 * 110.71949 * 100.02781 * 4 2 1 7 7 C 1.34773 * 119.99769 * 205.00076 * 6 4 2 8 8 O 1.21593 * 120.00413 * 359.97438 * 7 6 4 9 9 C 1.47540 * 119.99800 * 179.97438 * 7 6 4 10 10 C 1.39523 * 120.05313 * 0.02562 * 9 7 6 11 11 C 1.37789 * 120.18416 * 179.97438 * 10 9 7 12 12 C 1.38646 * 119.97653 * 359.83155 * 11 10 9 13 13 C 1.37656 * 120.32049 * 0.02562 * 12 11 10 14 14 C 1.38882 * 120.86978 * 0.06612 * 13 12 11 15 15 O 1.35858 * 111.29651 * 179.31839 * 14 13 12 16 16 C 1.43776 * 109.23595 * 19.60335 * 15 14 13 17 17 C 1.51674 * 132.14151 * 180.89906 * 13 12 11 18 18 C 1.53000 * 110.94127 * 282.55575 * 17 13 12 19 19 C 1.53001 * 110.94345 * 46.24374 * 17 13 12 20 20 C 1.55160 * 102.94100 * 218.38852 * 4 2 1 21 21 C 1.54909 * 101.58106 * 35.50559 * 20 4 2 22 22 N 1.47026 * 109.88078 * 121.01151 * 2 1 3 23 23 C 1.36933 * 125.65326 * 298.09502 * 22 2 1 24 24 H 1.08005 * 119.99541 * 359.97438 * 23 22 2 25 25 C 1.38813 * 120.00564 * 180.02562 * 23 22 2 26 26 N 1.31616 * 119.99514 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00305 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47209 * 89.99775 * 27 25 23 29 29 H 1.48501 * 109.47422 * 209.99954 * 27 25 23 30 30 H 1.48504 * 109.47192 * 329.99911 * 27 25 23 31 31 H 1.09004 * 109.46790 * 300.43693 * 1 2 3 32 32 H 1.08999 * 109.46948 * 60.43728 * 1 2 3 33 33 H 1.08998 * 109.46799 * 180.44052 * 1 2 3 34 34 H 0.96990 * 119.99803 * 25.00022 * 6 4 2 35 35 H 1.07993 * 119.91062 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.01557 * 179.80497 * 11 10 9 37 37 H 1.07997 * 119.83984 * 179.97438 * 12 11 10 38 38 H 1.09002 * 110.75379 * 90.43679 * 16 15 14 39 39 H 1.08999 * 110.75531 * 213.61731 * 16 15 14 40 40 H 1.09001 * 109.47435 * 59.99606 * 18 17 13 41 41 H 1.09001 * 109.47642 * 179.97438 * 18 17 13 42 42 H 1.09005 * 109.47160 * 299.99614 * 18 17 13 43 43 H 1.08997 * 109.46663 * 60.00023 * 19 17 13 44 44 H 1.08998 * 109.47593 * 180.02562 * 19 17 13 45 45 H 1.09003 * 109.46973 * 300.00308 * 19 17 13 46 46 H 1.09006 * 111.00068 * 153.57567 * 20 4 2 47 47 H 1.08996 * 111.00195 * 277.42551 * 20 4 2 48 48 H 1.08996 * 110.36158 * 204.14752 * 21 20 4 49 49 H 1.09002 * 110.36956 * 81.83034 * 21 20 4 50 50 H 0.97002 * 119.99999 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2416 5 1 1.3052 -1.4483 -1.6161 6 7 2.4555 0.1928 -2.2877 7 6 2.4582 -0.1934 -3.5789 8 8 2.1286 -1.3256 -3.8756 9 6 2.8612 0.7575 -4.6325 10 6 3.2401 2.0568 -4.2934 11 6 3.6175 2.9469 -5.2751 12 6 3.6244 2.5509 -6.6038 13 6 3.2552 1.2706 -6.9493 14 6 2.8688 0.3542 -5.9798 15 8 2.5322 -0.8391 -6.5351 16 6 3.1047 -0.9276 -7.8509 17 6 3.1819 0.5583 -8.2864 18 6 1.9336 0.9811 -9.0635 19 6 4.4470 0.8089 -9.1096 20 6 3.2877 -1.5152 -0.6901 21 6 2.8145 -1.8783 0.7396 22 7 2.0300 -0.7123 1.1850 23 6 1.8087 -0.3496 2.4867 24 1 1.2218 0.5292 2.7101 25 6 2.3394 -1.1106 3.5193 26 7 3.0550 -2.1812 3.2470 27 14 2.0380 -0.6153 5.2949 28 1 0.7967 -1.2656 5.7864 29 1 3.1871 -1.0465 6.1310 30 1 1.8906 0.8600 5.3792 31 1 -0.3633 0.5206 0.8861 32 1 -0.3633 0.5070 -0.8939 33 1 -0.3633 -1.0276 0.0079 34 1 2.7188 1.0958 -2.0511 35 1 3.2378 2.3656 -3.2586 36 1 3.9073 3.9529 -5.0099 37 1 3.9201 3.2505 -7.3715 38 1 4.0962 -1.3790 -7.8113 39 1 2.4524 -1.4901 -8.5190 40 1 1.9627 2.0563 -9.2407 41 1 1.9051 0.4565 -10.0186 42 1 1.0439 0.7322 -8.4851 43 1 5.3149 0.4396 -8.5634 44 1 4.3689 0.2877 -10.0637 45 1 4.5583 1.8784 -9.2883 46 1 3.4852 -2.4129 -1.2761 47 1 4.1654 -0.8697 -0.6591 48 1 3.6716 -2.0318 1.3952 49 1 2.1887 -2.7705 0.7169 50 1 3.4262 -2.7128 3.9685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089084699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:16 Heat of formation + Delta-G solvation = -34.069612 kcal Electronic energy + Delta-G solvation = -30476.572359 eV Core-core repulsion = 26468.985600 eV Total energy + Delta-G solvation = -4007.586760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.51626 -40.93678 -39.22288 -38.23232 -36.05912 -35.62765 -33.91568 -32.14741 -31.75458 -30.82804 -30.23414 -28.26193 -27.43590 -26.73150 -25.87695 -24.82226 -23.22022 -22.43650 -21.81995 -21.54722 -20.35357 -18.73342 -18.27141 -18.25587 -17.67070 -17.09510 -17.03560 -16.53049 -16.14412 -15.84283 -15.72034 -15.50991 -15.22449 -14.76243 -14.56943 -14.49015 -14.34165 -14.02413 -13.85280 -13.77221 -13.59338 -13.31048 -13.15375 -12.94339 -12.89136 -12.75578 -12.70810 -12.60744 -12.36494 -12.25568 -12.12097 -11.97783 -11.93676 -11.85395 -11.60007 -11.57856 -11.46619 -10.90435 -10.73172 -10.16162 -9.87447 -9.19566 -8.90737 -7.74413 -5.19811 -0.17072 0.31022 1.48657 1.50627 1.59030 1.84364 2.06645 2.29682 2.52628 2.78644 3.23123 3.36054 3.45943 3.55081 3.74266 3.83139 3.90421 3.93130 3.93836 4.12218 4.17978 4.26127 4.36044 4.42103 4.47507 4.49644 4.56497 4.60743 4.65278 4.74567 4.77968 4.79528 4.91900 4.93721 4.95614 5.01952 5.04037 5.10393 5.18891 5.23862 5.32918 5.33366 5.39189 5.41106 5.49673 5.58451 5.59839 5.64526 5.78912 6.13540 6.29693 6.54485 7.10834 7.22437 7.78350 8.42670 9.27846 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.002262 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.942557 B =12375.979848 C =12701.225353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 H 0.056 0.944 4 C 0.152 3.848 5 H 0.075 0.925 6 N -0.699 5.699 7 C 0.553 3.447 8 O -0.577 6.577 9 C -0.184 4.184 10 C -0.053 4.053 11 C -0.147 4.147 12 C -0.035 4.035 13 C -0.178 4.178 14 C 0.138 3.862 15 O -0.315 6.315 16 C 0.039 3.961 17 C -0.047 4.047 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.139 4.139 21 C 0.159 3.841 22 N -0.613 5.613 23 C -0.226 4.226 24 H 0.087 0.913 25 C -0.071 4.071 26 N -0.952 5.952 27 Si 0.980 3.020 28 H -0.291 1.291 29 H -0.296 1.296 30 H -0.265 1.265 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.412 0.588 35 H 0.154 0.846 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.080 0.920 49 H -0.017 1.017 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 14.223 -28.001 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.074 0.926 4 C 0.047 3.953 5 H 0.093 0.907 6 N -0.352 5.352 7 C 0.343 3.657 8 O -0.458 6.458 9 C -0.188 4.188 10 C -0.072 4.072 11 C -0.165 4.165 12 C -0.053 4.053 13 C -0.179 4.179 14 C 0.090 3.910 15 O -0.228 6.228 16 C -0.035 4.035 17 C -0.047 4.047 18 C -0.188 4.188 19 C -0.188 4.188 20 C -0.178 4.178 21 C 0.034 3.966 22 N -0.338 5.338 23 C -0.355 4.355 24 H 0.105 0.895 25 C -0.263 4.263 26 N -0.602 5.602 27 Si 0.809 3.191 28 H -0.218 1.218 29 H -0.223 1.223 30 H -0.190 1.190 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.188 0.812 37 H 0.180 0.820 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.001 0.999 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.886 13.175 -27.911 30.999 hybrid contribution -0.192 -0.439 1.492 1.567 sum 2.695 12.736 -26.419 29.452 Atomic orbital electron populations 1.22128 0.96619 1.00645 1.01211 1.21181 0.93488 0.95156 0.85619 0.92643 1.21717 0.96239 0.90892 0.86495 0.90666 1.45713 1.68116 1.16291 1.05047 1.18607 0.76970 0.87189 0.82957 1.90784 1.49888 1.22158 1.82966 1.19330 1.13284 0.96641 0.89536 1.21388 0.94191 0.89838 1.01780 1.21402 1.02170 1.01260 0.91649 1.20908 0.93577 0.93356 0.97487 1.21046 1.06859 0.95574 0.94403 1.19851 0.92603 0.85942 0.92578 1.86963 1.69018 1.34875 1.31917 1.24476 1.00235 0.97804 0.80984 1.20925 0.99432 0.91999 0.92321 1.21767 0.94364 1.02948 0.99702 1.21777 0.93858 1.03674 0.99501 1.23207 0.97743 0.99837 0.97062 1.21655 0.95754 0.87803 0.91435 1.44719 1.59729 1.28455 1.00888 1.19413 1.26502 1.07941 0.81606 0.89494 1.25644 1.00860 0.97726 1.02059 1.70049 1.40541 1.18919 1.30729 0.85044 0.76447 0.78093 0.79534 1.21820 1.22272 1.18978 0.92990 0.91363 0.94762 0.74996 0.82869 0.81225 0.81996 0.89857 0.86096 0.90479 0.89860 0.94179 0.92711 0.90198 0.90285 0.92096 0.90947 0.90245 0.99859 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 9.14 71.98 0.66 -4.85 16 2 C 0.15 6.17 3.48 45.34 0.16 6.33 16 3 H 0.06 2.06 7.72 -2.39 -0.02 2.04 16 4 C 0.15 5.89 2.84 46.18 0.13 6.02 16 5 H 0.08 3.24 7.26 -2.39 -0.02 3.22 16 6 N -0.70 -21.92 5.13 -440.06 -2.26 -24.17 16 7 C 0.55 19.25 7.76 86.70 0.67 19.92 16 8 O -0.58 -25.49 15.51 10.89 0.17 -25.32 16 9 C -0.18 -5.06 5.89 -19.93 -0.12 -5.18 16 10 C -0.05 -0.98 9.51 22.47 0.21 -0.77 16 11 C -0.15 -1.87 10.05 22.26 0.22 -1.64 16 12 C -0.04 -0.45 9.91 22.23 0.22 -0.23 16 13 C -0.18 -3.26 5.04 -19.54 -0.10 -3.36 16 14 C 0.14 3.75 6.72 23.01 0.15 3.91 16 15 O -0.31 -9.54 10.13 -77.05 -0.78 -10.32 16 16 C 0.04 0.73 7.10 72.68 0.52 1.25 16 17 C -0.05 -0.64 1.03 -51.92 -0.05 -0.70 16 18 C -0.13 -1.47 8.66 71.98 0.62 -0.85 16 19 C -0.13 -1.08 8.54 71.98 0.61 -0.46 16 20 C -0.14 -5.87 6.77 31.99 0.22 -5.66 16 21 C 0.16 8.26 5.89 86.85 0.51 8.77 16 22 N -0.61 -31.32 3.13 -668.26 -2.09 -33.41 16 23 C -0.23 -12.39 9.88 84.03 0.83 -11.56 16 24 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 25 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 26 N -0.95 -57.47 10.09 21.65 0.22 -57.25 16 27 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 31 H 0.05 1.96 8.03 -2.38 -0.02 1.94 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.41 10.02 6.38 -92.72 -0.59 9.42 16 35 H 0.15 2.11 6.37 -2.91 -0.02 2.09 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.08 1.41 7.86 -2.39 -0.02 1.40 16 39 H 0.12 1.75 7.94 -2.39 -0.02 1.73 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 42 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.05 0.54 8.05 -2.39 -0.02 0.52 16 44 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 47 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 48 H 0.08 4.62 5.87 -2.39 -0.01 4.60 16 49 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -78.23 397.74 3.58 -74.65 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.35 Total: 20.78 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.94 Total: 7.40 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -4.13 Total: -114.83 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.61 Total: -35.64 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -78.23 3.58 -74.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089084699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.577 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds