Wall clock time and date at job start Wed Apr 1 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.91276 * 2 1 4 4 C 1.55116 * 111.16395 * 236.06494 * 2 1 3 5 5 N 1.47429 * 104.94521 * 205.13228 * 4 2 1 6 6 C 1.36935 * 125.65077 * 203.97419 * 5 4 2 7 7 H 1.07994 * 119.99587 * 180.02562 * 6 5 4 8 8 C 1.38808 * 119.99997 * 0.03656 * 6 5 4 9 9 N 1.31624 * 120.00062 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47338 * 59.99803 * 10 8 6 12 12 H 1.48502 * 109.47191 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46689 * 299.99794 * 10 8 6 14 14 C 1.47025 * 108.69713 * 24.00355 * 5 4 2 15 15 C 1.54319 * 107.27582 * 358.94458 * 14 5 4 16 16 H 1.09002 * 110.72472 * 96.34011 * 15 14 5 17 17 C 1.53000 * 110.72248 * 219.44224 * 15 14 5 18 18 N 1.46495 * 109.46832 * 291.15950 * 17 15 14 19 19 C 1.34786 * 120.00020 * 179.97438 * 18 17 15 20 20 O 1.21279 * 119.99509 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00067 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.72284 * 60.57734 * 21 19 18 23 23 C 1.53407 * 109.69684 * 299.99991 * 21 19 18 24 24 O 1.42823 * 108.41025 * 175.61300 * 23 21 19 25 25 C 1.35847 * 117.85856 * 49.16854 * 24 23 21 26 26 C 1.39151 * 118.50293 * 162.79090 * 25 24 23 27 27 C 1.37966 * 120.21692 * 179.77785 * 26 25 24 28 28 C 1.38283 * 119.95773 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.98780 * 0.08854 * 28 27 26 30 30 C 1.38376 * 121.80613 * 342.73943 * 25 24 23 31 31 C 1.50765 * 121.40015 * 0.55504 * 30 25 24 32 32 H 1.08992 * 109.47425 * 296.10409 * 1 2 3 33 33 H 1.09002 * 109.46776 * 56.10696 * 1 2 3 34 34 H 1.08999 * 109.47287 * 176.09849 * 1 2 3 35 35 H 1.09000 * 110.41802 * 86.20886 * 4 2 1 36 36 H 1.09000 * 110.30591 * 324.00682 * 4 2 1 37 37 H 0.96996 * 119.99942 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.88365 * 239.52078 * 14 5 4 39 39 H 1.09006 * 110.00634 * 118.43384 * 14 5 4 40 40 H 1.08995 * 109.47219 * 171.15305 * 17 15 14 41 41 H 1.09006 * 109.46945 * 51.15420 * 17 15 14 42 42 H 0.96993 * 120.00444 * 359.97438 * 18 17 15 43 43 H 1.09002 * 109.68467 * 55.87192 * 23 21 19 44 44 H 1.08999 * 109.68325 * 295.35326 * 23 21 19 45 45 H 1.08006 * 119.89026 * 359.80016 * 26 25 24 46 46 H 1.08004 * 120.02089 * 180.02562 * 27 26 25 47 47 H 1.08006 * 120.00718 * 180.02562 * 28 27 26 48 48 H 1.07993 * 119.84469 * 180.02562 * 29 28 27 49 49 H 1.08998 * 109.43755 * 102.19844 * 31 30 25 50 50 H 1.09001 * 109.43246 * 222.10688 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2475 -0.7703 6 6 4.4676 -1.5742 -1.6019 7 1 5.4143 -1.8868 -1.1868 8 6 4.3027 -1.5033 -2.9784 9 7 3.1491 -1.1216 -3.4842 10 14 5.7181 -1.9497 -4.1128 11 1 6.1203 -3.3587 -3.8718 12 1 5.2888 -1.7917 -5.5256 13 1 6.8705 -1.0528 -3.8428 14 6 3.4671 -1.2780 0.6991 15 6 2.0861 -0.8079 1.2024 16 1 1.4450 -1.6613 1.4230 17 6 2.2348 0.0878 2.4339 18 7 2.7028 -0.7141 3.5671 19 6 2.9071 -0.1322 4.7656 20 8 2.7030 1.0550 4.9059 21 6 3.3880 -0.9572 5.9315 22 1 4.3569 -1.3973 5.6959 23 6 2.3742 -2.0689 6.2314 24 8 2.9037 -2.8940 7.2700 25 6 3.3863 -2.2823 8.3829 26 6 3.5650 -3.0432 9.5341 27 6 4.0572 -2.4590 10.6830 28 6 4.3740 -1.1130 10.6921 29 6 4.1957 -0.3541 9.5520 30 6 3.7013 -0.9350 8.3960 31 6 3.5123 -0.0722 7.1741 32 1 -0.3634 0.4521 0.9227 33 1 -0.3633 0.5731 -0.8531 34 1 -0.3634 -1.0253 -0.0699 35 1 2.1644 -0.1734 -2.0836 36 1 1.4553 -1.6696 -1.4052 37 1 3.0340 -1.0717 -4.4460 38 1 4.2434 -0.6056 1.0644 39 1 3.6624 -2.2927 1.0463 40 1 1.2704 0.5334 2.6776 41 1 2.9571 0.8768 2.2242 42 1 2.8657 -1.6636 3.4550 43 1 2.2096 -2.6671 5.3352 44 1 1.4319 -1.6284 6.5569 45 1 3.3178 -4.0945 9.5282 46 1 4.1950 -3.0526 11.5747 47 1 4.7598 -0.6549 11.5909 48 1 4.4443 0.6967 9.5616 49 1 2.6062 0.5231 7.2870 50 1 4.3702 0.5909 7.0622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092799029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:39 Heat of formation + Delta-G solvation = -36.000541 kcal Electronic energy + Delta-G solvation = -29711.974568 eV Core-core repulsion = 25704.304076 eV Total energy + Delta-G solvation = -4007.670491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25704 -39.69912 -38.08697 -37.71759 -34.83918 -34.46189 -33.00556 -31.27149 -30.78486 -30.55223 -29.19452 -26.22374 -25.98616 -25.38728 -24.39619 -22.94734 -22.68430 -21.23670 -20.10206 -19.88686 -19.25938 -18.18742 -17.68186 -16.84582 -16.70944 -16.10807 -15.76586 -15.55348 -15.26649 -14.89285 -14.60276 -14.29836 -14.13576 -13.94183 -13.75588 -13.60164 -13.47796 -13.20643 -13.09855 -12.72224 -12.66240 -12.10757 -11.95892 -11.81428 -11.58651 -11.51796 -11.43575 -11.21885 -11.17340 -10.94181 -10.89962 -10.80550 -10.30594 -10.10049 -10.00735 -9.92872 -9.76443 -9.41855 -9.11838 -9.05733 -8.67697 -8.48419 -6.86644 -5.68049 -3.10085 0.99109 1.10364 2.43969 2.86153 3.07955 3.38564 3.42846 3.44085 3.44369 4.12348 4.25681 4.37684 4.46164 4.50036 4.65834 4.74487 4.84681 4.98726 5.06477 5.09438 5.14104 5.18999 5.21023 5.26049 5.36979 5.46401 5.53686 5.59678 5.63917 5.71144 5.76387 5.82460 5.95900 6.01536 6.05796 6.14776 6.15679 6.21360 6.21623 6.35679 6.43876 6.48493 6.55479 6.57525 6.74758 6.90122 7.08938 7.39752 7.49989 7.59676 7.83498 8.08023 8.33609 9.19277 9.80041 10.44646 11.35557 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.002039 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.982351 B =13727.297690 C =14464.644923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.110 4.110 16 H 0.077 0.923 17 C 0.132 3.868 18 N -0.722 5.722 19 C 0.520 3.480 20 O -0.536 6.536 21 C -0.148 4.148 22 H 0.113 0.887 23 C 0.073 3.927 24 O -0.309 6.309 25 C 0.127 3.873 26 C -0.147 4.147 27 C -0.091 4.091 28 C -0.152 4.152 29 C -0.083 4.083 30 C -0.155 4.155 31 C -0.059 4.059 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.013 0.987 37 H 0.253 0.747 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.090 0.910 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -1.038 25.493 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.212 1.212 14 C 0.015 3.985 15 C -0.129 4.129 16 H 0.095 0.905 17 C 0.008 3.992 18 N -0.373 5.373 19 C 0.305 3.695 20 O -0.413 6.413 21 C -0.170 4.170 22 H 0.131 0.869 23 C -0.002 4.002 24 O -0.223 6.223 25 C 0.082 3.918 26 C -0.166 4.166 27 C -0.109 4.109 28 C -0.170 4.170 29 C -0.102 4.102 30 C -0.156 4.156 31 C -0.096 4.096 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.236 0.764 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.109 0.891 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.960 -0.391 25.278 25.454 hybrid contribution 0.881 -0.587 -0.748 1.296 sum -2.080 -0.978 24.530 24.637 Atomic orbital electron populations 1.21647 0.95452 1.01426 1.00675 1.22636 0.94597 0.99522 0.96393 0.91041 1.22020 0.84040 0.95862 0.94632 1.44468 1.10700 1.78855 0.98972 1.19017 0.91116 1.37854 0.87239 0.90602 1.24793 0.97321 1.01913 0.96633 1.69781 1.22551 1.53603 1.11093 0.86148 0.81222 0.78188 0.79908 1.21215 1.21545 1.21155 1.21329 0.93388 0.97069 0.86715 1.22501 0.98656 0.98130 0.93655 0.90493 1.21495 0.99621 0.93930 0.84107 1.46134 1.67828 1.13183 1.10171 1.20118 0.77657 0.88064 0.83621 1.90714 1.51157 1.15512 1.83945 1.22031 1.02150 0.97688 0.95140 0.86857 1.22935 0.95080 0.91893 0.90317 1.86037 1.75243 1.35469 1.25565 1.18744 0.95368 0.91025 0.86653 1.20613 1.04676 1.00575 0.90715 1.20937 0.97594 0.95045 0.97306 1.21038 1.03084 0.94341 0.98515 1.20922 0.97511 0.99924 0.91802 1.19883 1.05132 0.93490 0.97072 1.20301 1.04589 0.96139 0.88601 0.93672 0.92630 0.92942 0.87593 0.96912 0.93649 0.95879 0.96435 0.91483 0.91160 0.76379 0.86802 0.90941 0.85182 0.85442 0.85844 0.85638 0.89131 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.32 37.16 0.35 -1.64 16 2 C -0.11 -1.98 3.10 -88.35 -0.27 -2.26 16 3 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 4 C 0.16 3.73 5.37 -2.41 -0.01 3.72 16 5 N -0.60 -15.11 3.40 -169.94 -0.58 -15.68 16 6 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 10 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.77 6.64 -3.07 -0.02 2.75 16 15 C -0.11 -1.74 2.45 -88.79 -0.22 -1.95 16 16 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 17 C 0.13 1.82 5.00 -4.04 -0.02 1.80 16 18 N -0.72 -8.37 5.31 -60.29 -0.32 -8.69 16 19 C 0.52 6.33 7.16 -10.98 -0.08 6.25 16 20 O -0.54 -8.46 15.80 5.56 0.09 -8.37 16 21 C -0.15 -1.42 2.76 -91.53 -0.25 -1.68 16 22 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 23 C 0.07 0.63 6.25 37.37 0.23 0.86 16 24 O -0.31 -3.18 10.27 -19.26 -0.20 -3.37 16 25 C 0.13 1.30 6.47 -39.19 -0.25 1.05 16 26 C -0.15 -1.32 9.94 -39.34 -0.39 -1.71 16 27 C -0.09 -0.69 10.04 -39.66 -0.40 -1.08 16 28 C -0.15 -1.15 10.04 -39.61 -0.40 -1.55 16 29 C -0.08 -0.71 9.67 -39.53 -0.38 -1.10 16 30 C -0.15 -1.52 5.75 -104.44 -0.60 -2.12 16 31 C -0.06 -0.58 4.66 -27.82 -0.13 -0.71 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.11 2.84 5.87 -51.93 -0.30 2.53 16 36 H 0.01 0.32 7.99 -51.93 -0.41 -0.09 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 42 H 0.40 3.86 7.80 -40.82 -0.32 3.55 16 43 H 0.11 0.77 7.50 -51.93 -0.39 0.38 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 47 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 48 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -32.26 398.23 -10.66 -42.93 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.10 Total: 2.36 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.10 Total: -6.08 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.34 Total: -50.35 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.11 Total: -11.75 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.26 -10.66 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092799029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.926 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds