Wall clock time and date at job start Wed Apr 1 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21547 * 120.00101 * 359.97438 * 19 18 17 21 21 C 1.47842 * 119.99708 * 180.02562 * 19 18 17 22 22 C 1.39459 * 120.01532 * 0.02562 * 21 19 18 23 23 C 1.37937 * 119.70254 * 180.02562 * 22 21 19 24 24 C 1.38209 * 120.05509 * 0.07848 * 23 22 21 25 25 C 1.38758 * 120.61404 * 359.96133 * 24 23 22 26 26 C 1.37665 * 119.85989 * 359.62281 * 25 24 23 27 27 C 1.50721 * 121.41870 * 180.29580 * 26 25 24 28 28 C 1.52965 * 109.83498 * 343.35546 * 27 26 25 29 29 O 1.43216 * 108.46152 * 48.94724 * 28 27 26 30 30 C 1.42715 * 113.13176 * 289.41881 * 29 28 27 31 31 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 32 32 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 33 33 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 34 34 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 35 35 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 36 36 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 37 37 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 38 38 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 39 39 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 40 40 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 41 41 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 42 42 H 1.08006 * 120.15019 * 0.03057 * 22 21 19 43 43 H 1.07999 * 119.97556 * 180.10704 * 23 22 21 44 44 H 1.07999 * 119.69897 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.56089 * 223.13743 * 27 26 25 46 46 H 1.09000 * 109.17035 * 103.33325 * 27 26 25 47 47 H 1.09001 * 109.64211 * 289.25190 * 28 27 26 48 48 H 1.09005 * 109.64141 * 168.63174 * 28 27 26 49 49 H 1.08997 * 109.33525 * 291.55638 * 30 29 28 50 50 H 1.08997 * 109.20300 * 171.96503 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6645 1.0797 4.9155 21 6 3.2352 -0.9339 5.9548 22 6 3.4220 -2.3085 5.8123 23 6 3.8034 -3.0631 6.9022 24 6 3.9973 -2.4577 8.1294 25 6 3.8128 -1.0907 8.2801 26 6 3.4405 -0.3259 7.1977 27 6 3.2369 1.1624 7.3201 28 6 3.0930 1.5472 8.7935 29 8 4.1619 0.9390 9.5275 30 6 4.0303 -0.4777 9.6392 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.5399 0.8745 33 1 -0.3633 0.4875 -0.9047 34 1 1.3130 -1.4731 -1.5800 35 1 2.3716 -0.0991 -1.9990 36 1 2.3659 -2.2172 -4.2773 37 1 3.7961 -2.1446 1.2133 38 1 4.1932 -0.4492 0.7977 39 1 2.9854 0.8627 2.2436 40 1 1.2749 0.5884 2.6524 41 1 2.7627 -1.6601 3.4934 42 1 3.2689 -2.7802 4.8528 43 1 3.9510 -4.1277 6.7964 44 1 4.2955 -3.0540 8.9790 45 1 2.3359 1.4531 6.7799 46 1 4.0974 1.6777 6.8933 47 1 2.1367 1.1885 9.1742 48 1 3.1483 2.6310 8.8963 49 1 3.1809 -0.7117 10.2809 50 1 4.9390 -0.8885 10.0792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092815816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:40 Heat of formation + Delta-G solvation = -35.383559 kcal Electronic energy + Delta-G solvation = -30012.630121 eV Core-core repulsion = 26004.986384 eV Total energy + Delta-G solvation = -4007.643737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.97177 -39.38204 -38.07382 -37.57083 -34.89178 -33.09999 -33.03638 -32.10554 -30.76178 -30.21732 -28.99718 -26.07799 -25.90308 -25.31381 -24.09739 -23.71475 -22.53632 -20.91145 -20.22493 -19.99710 -19.24441 -17.88618 -16.84351 -16.81614 -16.40538 -16.15044 -15.74807 -15.59250 -15.47560 -14.88351 -14.58658 -14.34118 -14.16013 -13.78678 -13.66729 -13.47808 -13.08636 -13.00813 -12.79297 -12.64279 -12.57060 -12.18768 -11.99255 -11.86906 -11.74473 -11.69450 -11.40119 -11.24680 -10.91164 -10.82835 -10.80773 -10.27113 -10.13907 -10.01098 -9.96457 -9.83944 -9.63871 -9.43273 -9.24803 -8.97942 -8.85419 -8.60064 -6.85078 -5.74653 -3.07091 0.57085 0.98735 2.70230 3.13181 3.37921 3.43275 3.45392 3.52555 3.59553 4.26235 4.38319 4.45310 4.47857 4.59412 4.72912 4.90374 4.95937 4.97910 5.05063 5.15534 5.16723 5.20952 5.30528 5.41965 5.46788 5.50886 5.53600 5.61860 5.64750 5.73186 5.84269 5.92536 5.97553 6.00060 6.04660 6.07378 6.16417 6.25279 6.27711 6.43078 6.46461 6.54246 6.54828 6.60080 6.73443 6.77993 6.91405 7.48349 7.54501 7.62695 7.81646 8.16340 8.23744 9.19591 9.80152 10.46658 11.37322 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.002271 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.480477 B =12326.828680 C =13429.111353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.182 3.818 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.133 3.867 18 N -0.718 5.718 19 C 0.555 3.445 20 O -0.537 6.537 21 C -0.134 4.134 22 C -0.080 4.080 23 C -0.130 4.130 24 C -0.087 4.087 25 C -0.136 4.136 26 C -0.012 4.012 27 C -0.120 4.120 28 C 0.054 3.946 29 O -0.377 6.377 30 C 0.104 3.896 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.019 0.981 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.400 0.600 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 1.592 24.953 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.098 0.902 17 C 0.010 3.990 18 N -0.369 5.369 19 C 0.343 3.657 20 O -0.416 6.416 21 C -0.137 4.137 22 C -0.099 4.099 23 C -0.148 4.148 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.013 4.013 27 C -0.156 4.156 28 C -0.022 4.022 29 O -0.296 6.296 30 C 0.028 3.972 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.236 0.764 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.119 0.881 49 H 0.083 0.917 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.947 2.485 24.839 25.039 hybrid contribution 0.377 -1.543 -0.960 1.856 sum -1.570 0.942 23.879 23.949 Atomic orbital electron populations 1.21693 0.95298 1.01454 1.00721 1.22432 0.95164 0.99102 0.96282 0.91386 1.21229 0.89225 0.93059 0.90723 1.44463 1.32776 1.51574 1.04416 1.19047 1.04506 1.18451 0.93798 0.90495 1.24818 0.98523 0.99894 0.97110 1.69975 1.30184 1.42624 1.13856 0.86130 0.78885 0.81532 0.79430 1.21634 1.21757 1.20651 1.21588 0.93001 0.97036 0.86838 1.22687 0.99447 0.98068 0.93086 0.90154 1.21437 1.00231 0.93718 0.83650 1.46031 1.69378 1.12331 1.09178 1.18212 0.77403 0.87300 0.82821 1.90705 1.52065 1.14701 1.84104 1.19898 1.05824 0.93938 0.94080 1.21367 0.96540 0.92658 0.99314 1.21040 1.00809 1.00334 0.92568 1.21173 0.97798 0.93661 0.97874 1.20234 1.02568 0.94330 0.96509 1.19567 0.94396 0.96109 0.91190 1.21462 1.05982 0.91154 0.97006 1.22823 0.89817 0.98768 0.90801 1.88072 1.47593 1.18921 1.74994 1.21396 1.02446 0.81361 0.92024 0.92791 0.93683 0.92666 0.93160 0.94200 0.93743 0.94654 0.96355 0.91194 0.91460 0.76419 0.85206 0.85069 0.85422 0.86637 0.89123 0.92786 0.88132 0.91700 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.13 37.16 0.34 -1.71 16 2 C -0.11 -1.96 3.01 -88.78 -0.27 -2.22 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.31 4.98 -3.06 -0.02 4.30 16 5 N -0.61 -15.17 3.39 -170.08 -0.58 -15.75 16 6 C -0.23 -6.33 10.26 -15.06 -0.15 -6.49 16 7 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 8 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 9 N -0.92 -26.76 10.36 55.49 0.57 -26.19 16 10 Si 0.91 21.91 29.56 -169.99 -5.02 16.88 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.14 2.80 6.65 -2.53 -0.02 2.78 16 15 C -0.11 -1.83 2.49 -88.47 -0.22 -2.05 16 16 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 17 C 0.13 1.88 5.14 -4.04 -0.02 1.86 16 18 N -0.72 -9.13 5.45 -61.25 -0.33 -9.46 16 19 C 0.55 7.57 7.73 -12.33 -0.10 7.47 16 20 O -0.54 -8.54 13.18 5.32 0.07 -8.47 16 21 C -0.13 -1.59 5.88 -104.90 -0.62 -2.21 16 22 C -0.08 -0.78 9.54 -39.24 -0.37 -1.15 16 23 C -0.13 -1.06 10.03 -39.70 -0.40 -1.46 16 24 C -0.09 -0.69 9.66 -39.40 -0.38 -1.07 16 25 C -0.14 -1.30 5.80 -104.65 -0.61 -1.91 16 26 C -0.01 -0.13 5.81 -104.21 -0.61 -0.74 16 27 C -0.12 -1.34 4.55 -27.89 -0.13 -1.47 16 28 C 0.05 0.50 6.85 37.14 0.25 0.75 16 29 O -0.38 -3.88 10.80 -35.23 -0.38 -4.26 16 30 C 0.10 0.84 6.66 36.00 0.24 1.08 16 31 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 1.31 6.98 -51.93 -0.36 0.95 16 35 H 0.04 1.06 7.61 -51.93 -0.40 0.67 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 39 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.40 4.39 6.50 -40.82 -0.27 4.13 16 42 H 0.13 1.05 6.39 -52.48 -0.34 0.71 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 45 H 0.12 1.43 6.00 -51.93 -0.31 1.11 16 46 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 47 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -32.55 392.69 -10.86 -43.41 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.94 Total: 2.45 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.16 Total: -4.53 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.34 Total: -51.40 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.31 Total: -12.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.55 -10.86 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092815816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.023 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds