Wall clock time and date at job start Wed Apr 1 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21547 * 120.00101 * 359.97438 * 19 18 17 21 21 C 1.47842 * 119.99708 * 180.02562 * 19 18 17 22 22 C 1.39459 * 120.01532 * 0.02562 * 21 19 18 23 23 C 1.37937 * 119.70254 * 180.02562 * 22 21 19 24 24 C 1.38209 * 120.05509 * 0.07848 * 23 22 21 25 25 C 1.38758 * 120.61404 * 359.96133 * 24 23 22 26 26 C 1.37665 * 119.85989 * 359.62281 * 25 24 23 27 27 C 1.50721 * 121.41870 * 180.29580 * 26 25 24 28 28 C 1.52965 * 109.83498 * 343.35546 * 27 26 25 29 29 O 1.43216 * 108.46152 * 48.94724 * 28 27 26 30 30 C 1.42715 * 113.13176 * 289.41881 * 29 28 27 31 31 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 32 32 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 33 33 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 34 34 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 35 35 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 36 36 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 37 37 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 38 38 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 39 39 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 40 40 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 41 41 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 42 42 H 1.08006 * 120.15019 * 0.03057 * 22 21 19 43 43 H 1.07999 * 119.97556 * 180.10704 * 23 22 21 44 44 H 1.07999 * 119.69897 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.56089 * 223.13743 * 27 26 25 46 46 H 1.09000 * 109.17035 * 103.33325 * 27 26 25 47 47 H 1.09001 * 109.64211 * 289.25190 * 28 27 26 48 48 H 1.09005 * 109.64141 * 168.63174 * 28 27 26 49 49 H 1.08997 * 109.33525 * 291.55638 * 30 29 28 50 50 H 1.08997 * 109.20300 * 171.96503 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6645 1.0797 4.9155 21 6 3.2352 -0.9339 5.9548 22 6 3.4220 -2.3085 5.8123 23 6 3.8034 -3.0631 6.9022 24 6 3.9973 -2.4577 8.1294 25 6 3.8128 -1.0907 8.2801 26 6 3.4405 -0.3259 7.1977 27 6 3.2369 1.1624 7.3201 28 6 3.0930 1.5472 8.7935 29 8 4.1619 0.9390 9.5275 30 6 4.0303 -0.4777 9.6392 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.5399 0.8745 33 1 -0.3633 0.4875 -0.9047 34 1 1.3130 -1.4731 -1.5800 35 1 2.3716 -0.0991 -1.9990 36 1 2.3659 -2.2172 -4.2773 37 1 3.7961 -2.1446 1.2133 38 1 4.1932 -0.4492 0.7977 39 1 2.9854 0.8627 2.2436 40 1 1.2749 0.5884 2.6524 41 1 2.7627 -1.6601 3.4934 42 1 3.2689 -2.7802 4.8528 43 1 3.9510 -4.1277 6.7964 44 1 4.2955 -3.0540 8.9790 45 1 2.3359 1.4531 6.7799 46 1 4.0974 1.6777 6.8933 47 1 2.1367 1.1885 9.1742 48 1 3.1483 2.6310 8.8963 49 1 3.1809 -0.7117 10.2809 50 1 4.9390 -0.8885 10.0792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092815816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:39 Heat of formation + Delta-G solvation = -55.301286 kcal Electronic energy + Delta-G solvation = -30013.493818 eV Core-core repulsion = 26004.986384 eV Total energy + Delta-G solvation = -4008.507434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.79237 -40.39938 -39.50949 -38.34439 -36.19494 -34.77611 -33.82799 -32.92575 -32.55794 -31.18022 -30.19370 -27.86153 -26.79026 -26.54190 -25.16603 -24.61297 -23.89194 -21.86858 -21.70480 -21.03248 -20.61352 -18.99788 -18.58176 -17.66727 -17.22728 -17.07875 -16.79709 -16.58393 -16.44553 -16.20486 -15.85695 -15.68023 -15.33736 -14.98606 -14.84353 -14.47741 -14.32129 -14.19919 -14.13263 -13.62048 -13.45926 -13.29786 -13.27492 -13.11064 -12.89357 -12.87150 -12.73070 -12.69027 -12.43691 -12.40644 -11.93409 -11.86217 -11.61973 -11.56833 -11.40801 -11.36578 -10.99570 -10.69185 -10.40200 -10.20677 -9.76849 -9.63885 -8.89873 -7.86464 -5.21002 -0.19001 0.28547 1.45374 1.46774 1.55784 1.81232 2.10778 2.48672 2.75480 2.92947 3.31118 3.57286 3.59940 3.63848 3.68951 3.79937 3.90433 3.92806 3.95265 4.05021 4.22259 4.33354 4.35430 4.39871 4.48012 4.51855 4.56783 4.59174 4.71001 4.74551 4.80321 4.82403 4.83028 4.84971 4.95013 4.95809 5.07087 5.10204 5.14796 5.29727 5.33520 5.36251 5.39505 5.46001 5.47945 5.54155 5.70293 5.81324 5.87745 6.12338 6.19742 6.48577 7.09809 7.14895 7.77456 8.42479 9.24274 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.002271 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.480477 B =12326.828680 C =13429.111353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.074 0.926 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.082 0.918 8 C -0.066 4.066 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.285 1.285 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.090 0.910 17 C 0.146 3.854 18 N -0.712 5.712 19 C 0.552 3.448 20 O -0.567 6.567 21 C -0.156 4.156 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.079 4.079 25 C -0.143 4.143 26 C -0.036 4.036 27 C -0.115 4.115 28 C 0.058 3.942 29 O -0.396 6.396 30 C 0.099 3.901 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.019 0.981 35 H -0.003 1.003 36 H 0.247 0.753 37 H 0.048 0.952 38 H 0.015 0.985 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.410 0.590 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.085 0.915 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 -0.183 27.786 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.092 0.908 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.224 1.224 13 H -0.193 1.193 14 C 0.012 3.988 15 C -0.109 4.109 16 H 0.109 0.891 17 C 0.022 3.978 18 N -0.364 5.364 19 C 0.342 3.658 20 O -0.448 6.448 21 C -0.159 4.159 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.097 4.097 25 C -0.143 4.143 26 C -0.037 4.037 27 C -0.152 4.152 28 C -0.018 4.018 29 O -0.314 6.314 30 C 0.023 3.977 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.015 0.985 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.247 0.753 42 H 0.161 0.839 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.117 0.883 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.128 0.872 49 H 0.102 0.898 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.707 0.693 27.710 27.771 hybrid contribution 0.372 -1.011 -1.789 2.088 sum -1.335 -0.318 25.921 25.958 Atomic orbital electron populations 1.21639 0.92928 1.01772 1.02117 1.22310 0.97029 0.98530 0.94195 0.90792 1.20996 0.88268 0.91925 0.92273 1.44796 1.32774 1.51351 1.06569 1.19445 1.04909 1.18461 0.94357 0.90015 1.25664 0.99813 1.02067 0.98343 1.70199 1.31835 1.44042 1.13732 0.85085 0.78249 0.78783 0.77385 1.21196 1.22358 1.19274 1.21760 0.95066 0.97466 0.84479 1.22473 0.97028 0.98334 0.93089 0.89132 1.21178 1.00449 0.92993 0.83170 1.45906 1.69239 1.12687 1.08576 1.18578 0.76746 0.87153 0.83362 1.90692 1.53413 1.16067 1.84624 1.19848 1.07831 0.94800 0.93463 1.21593 0.96310 0.91836 1.00648 1.21430 0.99503 1.01635 0.92070 1.21595 0.95959 0.93156 0.98952 1.20511 1.02122 0.95141 0.96569 1.19739 0.95769 0.96222 0.92008 1.21316 1.04112 0.91541 0.98212 1.22831 0.90225 0.99459 0.89301 1.88042 1.48127 1.20377 1.74901 1.21666 1.04310 0.80180 0.91539 0.93122 0.90587 0.92859 0.96285 0.98471 0.94421 0.93326 0.96735 0.92374 0.90444 0.75299 0.83949 0.82270 0.81994 0.88312 0.91435 0.91510 0.87156 0.89752 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.13 71.98 0.66 -3.06 16 2 C -0.10 -3.56 3.01 -9.60 -0.03 -3.59 16 3 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 4 C 0.19 9.34 4.98 86.73 0.43 9.77 16 5 N -0.63 -32.04 3.39 -692.00 -2.35 -34.39 16 6 C -0.24 -13.56 10.26 84.03 0.86 -12.70 16 7 H 0.08 4.36 7.84 -2.91 -0.02 4.33 16 8 C -0.07 -3.75 5.48 84.86 0.46 -3.28 16 9 N -0.95 -57.30 10.36 21.65 0.22 -57.08 16 10 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.14 5.37 6.65 86.86 0.58 5.95 16 15 C -0.09 -2.80 2.49 -9.40 -0.02 -2.82 16 16 H 0.09 2.70 8.04 -2.39 -0.02 2.68 16 17 C 0.15 3.94 5.14 86.38 0.44 4.39 16 18 N -0.71 -17.28 5.45 -465.96 -2.54 -19.82 16 19 C 0.55 14.93 7.73 86.79 0.67 15.60 16 20 O -0.57 -18.41 13.18 -3.86 -0.05 -18.46 16 21 C -0.16 -3.58 5.88 -20.04 -0.12 -3.70 16 22 C -0.09 -1.47 9.54 22.49 0.21 -1.26 16 23 C -0.13 -1.67 10.03 22.19 0.22 -1.45 16 24 C -0.08 -0.96 9.66 22.39 0.22 -0.75 16 25 C -0.14 -2.42 5.80 -19.88 -0.12 -2.53 16 26 C -0.04 -0.81 5.81 -19.60 -0.11 -0.93 16 27 C -0.11 -2.66 4.55 29.84 0.14 -2.52 16 28 C 0.06 1.03 6.85 71.97 0.49 1.52 16 29 O -0.40 -7.59 10.80 -148.98 -1.61 -9.20 16 30 C 0.10 1.33 6.66 71.23 0.47 1.80 16 31 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.02 1.04 6.98 -2.39 -0.02 1.02 16 35 H 0.00 -0.17 7.61 -2.39 -0.02 -0.19 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.01 0.60 7.91 -2.39 -0.02 0.58 16 39 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.41 8.27 6.50 -92.71 -0.60 7.67 16 42 H 0.14 1.96 6.39 -2.91 -0.02 1.94 16 43 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.10 2.57 6.00 -2.39 -0.01 2.56 16 46 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 47 H 0.07 0.99 8.07 -2.39 -0.02 0.97 16 48 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.84 392.69 1.51 -72.33 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.34 Total: 18.52 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 5.47 Total: 0.43 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.66 Total: -111.29 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -1.66 Total: -27.66 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.84 1.51 -72.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092815816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.029 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds