Wall clock time and date at job start Wed Apr 1 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99947 * 2 1 4 4 C 1.53001 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47391 * 174.99936 * 4 3 2 6 6 C 1.53007 * 109.47216 * 54.99542 * 4 3 2 7 7 N 1.46900 * 109.47046 * 295.00119 * 4 3 2 8 8 C 1.48532 * 111.00005 * 178.50554 * 7 4 3 9 9 C 1.54942 * 103.22884 * 159.71626 * 8 7 4 10 10 H 1.09001 * 110.72042 * 80.94220 * 9 8 7 11 11 C 1.53000 * 110.87821 * 204.15549 * 9 8 7 12 12 C 1.54598 * 102.92123 * 322.58781 * 9 8 7 13 13 H 1.08995 * 110.38996 * 262.99738 * 12 9 8 14 14 C 1.52995 * 110.30922 * 140.86894 * 12 9 8 15 15 C 1.53000 * 109.46958 * 177.82751 * 14 12 9 16 16 N 1.46505 * 109.46946 * 179.97438 * 15 14 12 17 17 C 1.34776 * 120.00146 * 179.97438 * 16 15 14 18 18 O 1.21287 * 119.99965 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00273 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.46956 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99859 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00074 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00265 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00353 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99886 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47083 * 90.00046 * 25 23 21 27 27 H 1.48498 * 109.46952 * 210.00355 * 25 23 21 28 28 H 1.48500 * 109.47174 * 330.00177 * 25 23 21 29 29 C 1.47899 * 110.99750 * 295.89824 * 7 4 3 30 30 H 1.09004 * 109.46668 * 60.00300 * 1 2 3 31 31 H 1.08998 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47196 * 300.00585 * 1 2 3 33 33 H 1.08992 * 109.46869 * 59.99824 * 3 2 1 34 34 H 1.08998 * 109.46941 * 299.99043 * 3 2 1 35 35 H 1.09003 * 109.46955 * 174.11523 * 6 4 3 36 36 H 1.08997 * 109.46862 * 54.11717 * 6 4 3 37 37 H 1.08998 * 109.47384 * 294.11584 * 6 4 3 38 38 H 1.08996 * 110.67040 * 278.15172 * 8 7 4 39 39 H 1.09001 * 110.66672 * 41.28252 * 8 7 4 40 40 H 1.09001 * 109.46874 * 173.58829 * 11 9 8 41 41 H 1.08999 * 109.47120 * 293.59246 * 11 9 8 42 42 H 1.08999 * 109.46765 * 53.59271 * 11 9 8 43 43 H 1.08995 * 109.47780 * 297.83281 * 14 12 9 44 44 H 1.08998 * 109.47042 * 57.83124 * 14 12 9 45 45 H 1.09000 * 109.47455 * 300.00085 * 15 14 12 46 46 H 1.09003 * 109.47033 * 60.00799 * 15 14 12 47 47 H 0.97000 * 120.00535 * 0.02562 * 16 15 14 48 48 H 1.09000 * 109.46797 * 300.00126 * 19 17 16 49 49 H 1.09003 * 109.46792 * 60.00290 * 19 17 16 50 50 H 0.96994 * 120.00428 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.92097 * 333.51034 * 29 7 4 52 52 H 1.08999 * 109.91552 * 94.80766 * 29 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 6 3.9791 0.3192 -1.1806 7 7 3.9769 0.5626 1.2562 8 6 5.4527 0.3960 1.2776 9 6 5.7710 0.2487 2.7868 10 1 5.5825 -0.7709 3.1230 11 6 7.2162 0.6554 3.0815 12 6 4.7797 1.2344 3.4470 13 1 5.2692 2.1872 3.6485 14 6 4.2229 0.6399 4.7420 15 6 3.2871 1.6516 5.4065 16 7 2.7534 1.0821 6.6464 17 6 1.9014 1.7993 7.4054 18 8 1.5761 2.9161 7.0619 19 6 1.3528 1.2137 8.6811 20 16 0.2456 2.4106 9.4671 21 6 -0.2368 1.4918 10.8910 22 1 0.1509 0.4960 11.0481 23 6 -1.1158 2.0472 11.8104 24 7 -1.4766 1.3607 12.8740 25 14 -1.7868 3.7692 11.5385 26 1 -3.0460 3.6918 10.7551 27 1 -2.0591 4.4074 12.8514 28 1 -0.7888 4.5774 10.7928 29 6 3.6512 1.4208 2.4159 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6888 1.8463 -0.8901 35 1 5.0674 0.3185 -1.2421 36 1 3.5633 0.7235 -2.1035 37 1 3.6226 -0.7009 -1.0378 38 1 5.7464 -0.5014 0.7331 39 1 5.9453 1.2763 0.8647 40 1 7.3819 0.6527 4.1588 41 1 7.8966 -0.0519 2.6073 42 1 7.3995 1.6553 2.6882 43 1 3.6702 -0.2718 4.5153 44 1 5.0455 0.4073 5.4182 45 1 3.8397 2.5633 5.6335 46 1 2.4643 1.8841 4.7304 47 1 3.0137 0.1891 6.9214 48 1 0.7998 0.3023 8.4540 49 1 2.1755 0.9808 9.3571 50 1 -2.0906 1.7490 13.5166 51 1 3.6021 2.4640 2.1037 52 1 2.6987 1.1146 2.8485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102676223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:56 Heat of formation + Delta-G solvation = -94.551985 kcal Electronic energy + Delta-G solvation = -27970.761434 eV Core-core repulsion = 24095.995913 eV Total energy + Delta-G solvation = -3874.765521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24725 -39.18028 -38.06198 -35.77909 -34.47648 -32.43096 -32.01243 -31.12396 -29.48670 -28.08333 -26.79289 -26.31270 -25.58825 -25.24211 -23.52962 -21.30174 -20.77143 -20.37478 -19.84116 -17.82983 -17.06701 -16.56627 -16.45262 -16.05744 -15.86336 -15.62019 -15.45908 -15.19339 -14.94244 -14.52236 -14.07352 -13.99124 -13.74941 -13.58314 -13.30145 -13.18196 -13.06215 -12.90762 -12.79147 -12.47726 -12.38153 -12.27420 -12.02579 -11.87418 -11.65218 -11.43425 -11.29361 -11.25519 -11.03792 -11.00223 -10.91032 -10.87938 -10.75808 -10.55713 -9.89718 -9.84729 -9.49113 -9.00542 -8.92317 -8.69350 -8.48828 -6.90621 -6.27981 -3.99532 2.78869 3.00895 3.32119 3.35550 3.45126 3.51190 3.60960 3.67861 4.16669 4.21455 4.33958 4.43658 4.52714 4.64908 4.74010 4.84448 4.88358 4.93564 4.96938 4.99753 5.06728 5.10980 5.11420 5.13636 5.19979 5.22466 5.27403 5.30304 5.34704 5.36330 5.42376 5.44739 5.48338 5.52870 5.54603 5.68583 5.73949 5.78412 5.80951 5.89840 5.96099 5.98183 6.03695 6.05544 6.56877 6.58874 6.69629 6.94740 7.65016 7.95134 8.42752 8.52481 9.18211 10.81241 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.001983 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.541872 B =14117.232040 C =15418.795456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.069 3.931 4 C 0.074 3.926 5 H 0.053 0.947 6 C -0.139 4.139 7 N -0.501 5.501 8 C 0.040 3.960 9 C -0.090 4.090 10 H 0.086 0.914 11 C -0.144 4.144 12 C -0.090 4.090 13 H 0.079 0.921 14 C -0.120 4.120 15 C 0.121 3.879 16 N -0.737 5.737 17 C 0.530 3.470 18 O -0.522 6.522 19 C -0.124 4.124 20 S -0.143 6.143 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 C 0.036 3.964 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.399 0.601 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.043 0.957 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.642 -3.483 -29.010 33.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.009 4.009 4 C -0.034 4.034 5 H 0.071 0.929 6 C -0.197 4.197 7 N -0.225 5.225 8 C -0.088 4.088 9 C -0.109 4.109 10 H 0.104 0.896 11 C -0.201 4.201 12 C -0.109 4.109 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.004 4.004 16 N -0.391 5.391 17 C 0.316 3.684 18 O -0.396 6.396 19 C -0.275 4.275 20 S 0.083 5.917 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 C -0.092 4.092 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.233 0.767 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.818 -2.280 -29.405 33.006 hybrid contribution 0.156 0.014 0.608 0.628 sum 14.974 -2.266 -28.797 32.536 Atomic orbital electron populations 1.22748 0.81464 1.02764 0.99769 1.87973 1.18971 1.26748 1.95250 1.22556 0.92831 0.85493 0.99993 1.21887 0.93733 0.96536 0.91269 0.92923 1.21733 1.00455 1.01568 0.95944 1.64835 1.11956 1.44419 1.01319 1.23291 0.88151 1.00859 0.96461 1.22123 0.94431 0.99974 0.94392 0.89580 1.21780 0.95243 1.01202 1.01906 1.22013 0.95445 0.99167 0.94300 0.90270 1.21829 0.99073 0.98874 0.96032 1.21334 0.96935 0.96520 0.85562 1.45970 1.48762 1.19912 1.24472 1.20279 0.77949 0.85538 0.84682 1.90694 1.58054 1.19076 1.71818 1.23282 1.03479 1.04142 0.96569 1.84776 1.56755 1.23117 1.27021 1.22321 1.32924 1.04752 1.06835 0.89379 1.24719 0.94750 0.98042 0.93861 1.69936 1.33157 1.37614 1.11000 0.86728 0.81487 0.84785 0.78813 1.19225 1.19960 1.15933 1.23051 0.99503 0.95257 0.91347 0.94496 0.89629 0.94050 0.93215 0.93211 0.92934 0.92444 0.90700 0.90007 0.93888 0.92170 0.92462 0.92753 0.90602 0.91049 0.91832 0.91687 0.76671 0.88505 0.88479 0.91956 0.93877 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.37 -3.67 9.89 -35.23 -0.35 -4.02 16 3 C 0.07 0.56 5.50 37.16 0.20 0.76 16 4 C 0.07 0.57 2.17 -67.71 -0.15 0.42 16 5 H 0.05 0.37 7.97 -51.93 -0.41 -0.05 16 6 C -0.14 -0.96 8.56 37.16 0.32 -0.64 16 7 N -0.50 -4.21 5.06 -222.49 -1.12 -5.33 16 8 C 0.04 0.28 4.83 -1.90 -0.01 0.27 16 9 C -0.09 -0.59 3.19 -88.75 -0.28 -0.88 16 10 H 0.09 0.61 7.86 -51.93 -0.41 0.20 16 11 C -0.14 -0.80 9.17 37.16 0.34 -0.46 16 12 C -0.09 -0.66 2.60 -89.26 -0.23 -0.89 16 13 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 14 C -0.12 -0.94 4.52 -26.73 -0.12 -1.07 16 15 C 0.12 1.33 5.49 -4.04 -0.02 1.31 16 16 N -0.74 -9.45 5.56 -60.29 -0.33 -9.78 16 17 C 0.53 9.53 7.85 -10.98 -0.09 9.44 16 18 O -0.52 -11.41 15.86 5.55 0.09 -11.32 16 19 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 20 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 21 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 22 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 23 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 25 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 29 C 0.04 0.30 4.64 -2.75 -0.01 0.29 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.42 7.12 -51.93 -0.37 0.05 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.32 7.23 -51.93 -0.38 -0.06 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.64 7.76 -51.93 -0.40 0.23 16 38 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 39 H 0.04 0.28 7.90 -51.93 -0.41 -0.13 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.79 6.88 -51.93 -0.36 0.43 16 47 H 0.40 3.97 8.47 -40.82 -0.35 3.63 16 48 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 49 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 50 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 51 H 0.04 0.35 7.66 -51.93 -0.40 -0.04 16 52 H 0.08 0.82 6.68 -51.93 -0.35 0.48 16 LS Contribution 422.13 15.07 6.36 6.36 Total: -1.00 -34.43 422.13 -9.51 -43.93 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -9.71 Total: -1.09 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 1.50 Total: -4.40 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -0.68 Total: -41.02 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.26 Total: -15.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.43 -9.51 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102676223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.618 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds