Wall clock time and date at job start Wed Apr 1 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99947 * 2 1 4 4 C 1.53001 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47391 * 174.99936 * 4 3 2 6 6 C 1.53007 * 109.47216 * 54.99542 * 4 3 2 7 7 N 1.46900 * 109.47046 * 295.00119 * 4 3 2 8 8 C 1.48532 * 111.00005 * 178.50554 * 7 4 3 9 9 C 1.54942 * 103.22884 * 159.71626 * 8 7 4 10 10 H 1.09001 * 110.72042 * 80.94220 * 9 8 7 11 11 C 1.53000 * 110.87821 * 204.15549 * 9 8 7 12 12 C 1.54598 * 102.92123 * 322.58781 * 9 8 7 13 13 H 1.08995 * 110.38996 * 262.99738 * 12 9 8 14 14 C 1.52995 * 110.30922 * 140.86894 * 12 9 8 15 15 C 1.53000 * 109.46958 * 177.82751 * 14 12 9 16 16 N 1.46505 * 109.46946 * 179.97438 * 15 14 12 17 17 C 1.34776 * 120.00146 * 179.97438 * 16 15 14 18 18 O 1.21287 * 119.99965 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00273 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.46956 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99859 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00074 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00265 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00353 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99886 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47083 * 90.00046 * 25 23 21 27 27 H 1.48498 * 109.46952 * 210.00355 * 25 23 21 28 28 H 1.48500 * 109.47174 * 330.00177 * 25 23 21 29 29 C 1.47899 * 110.99750 * 295.89824 * 7 4 3 30 30 H 1.09004 * 109.46668 * 60.00300 * 1 2 3 31 31 H 1.08998 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47196 * 300.00585 * 1 2 3 33 33 H 1.08992 * 109.46869 * 59.99824 * 3 2 1 34 34 H 1.08998 * 109.46941 * 299.99043 * 3 2 1 35 35 H 1.09003 * 109.46955 * 174.11523 * 6 4 3 36 36 H 1.08997 * 109.46862 * 54.11717 * 6 4 3 37 37 H 1.08998 * 109.47384 * 294.11584 * 6 4 3 38 38 H 1.08996 * 110.67040 * 278.15172 * 8 7 4 39 39 H 1.09001 * 110.66672 * 41.28252 * 8 7 4 40 40 H 1.09001 * 109.46874 * 173.58829 * 11 9 8 41 41 H 1.08999 * 109.47120 * 293.59246 * 11 9 8 42 42 H 1.08999 * 109.46765 * 53.59271 * 11 9 8 43 43 H 1.08995 * 109.47780 * 297.83281 * 14 12 9 44 44 H 1.08998 * 109.47042 * 57.83124 * 14 12 9 45 45 H 1.09000 * 109.47455 * 300.00085 * 15 14 12 46 46 H 1.09003 * 109.47033 * 60.00799 * 15 14 12 47 47 H 0.97000 * 120.00535 * 0.02562 * 16 15 14 48 48 H 1.09000 * 109.46797 * 300.00126 * 19 17 16 49 49 H 1.09003 * 109.46792 * 60.00290 * 19 17 16 50 50 H 0.96994 * 120.00428 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.92097 * 333.51034 * 29 7 4 52 52 H 1.08999 * 109.91552 * 94.80766 * 29 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 6 3.9791 0.3192 -1.1806 7 7 3.9769 0.5626 1.2562 8 6 5.4527 0.3960 1.2776 9 6 5.7710 0.2487 2.7868 10 1 5.5825 -0.7709 3.1230 11 6 7.2162 0.6554 3.0815 12 6 4.7797 1.2344 3.4470 13 1 5.2692 2.1872 3.6485 14 6 4.2229 0.6399 4.7420 15 6 3.2871 1.6516 5.4065 16 7 2.7534 1.0821 6.6464 17 6 1.9014 1.7993 7.4054 18 8 1.5761 2.9161 7.0619 19 6 1.3528 1.2137 8.6811 20 16 0.2456 2.4106 9.4671 21 6 -0.2368 1.4918 10.8910 22 1 0.1509 0.4960 11.0481 23 6 -1.1158 2.0472 11.8104 24 7 -1.4766 1.3607 12.8740 25 14 -1.7868 3.7692 11.5385 26 1 -3.0460 3.6918 10.7551 27 1 -2.0591 4.4074 12.8514 28 1 -0.7888 4.5774 10.7928 29 6 3.6512 1.4208 2.4159 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6888 1.8463 -0.8901 35 1 5.0674 0.3185 -1.2421 36 1 3.5633 0.7235 -2.1035 37 1 3.6226 -0.7009 -1.0378 38 1 5.7464 -0.5014 0.7331 39 1 5.9453 1.2763 0.8647 40 1 7.3819 0.6527 4.1588 41 1 7.8966 -0.0519 2.6073 42 1 7.3995 1.6553 2.6882 43 1 3.6702 -0.2718 4.5153 44 1 5.0455 0.4073 5.4182 45 1 3.8397 2.5633 5.6335 46 1 2.4643 1.8841 4.7304 47 1 3.0137 0.1891 6.9214 48 1 0.7998 0.3023 8.4540 49 1 2.1755 0.9808 9.3571 50 1 -2.0906 1.7490 13.5166 51 1 3.6021 2.4640 2.1037 52 1 2.6987 1.1146 2.8485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102676223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:55 Heat of formation + Delta-G solvation = -119.068818 kcal Electronic energy + Delta-G solvation = -27971.824563 eV Core-core repulsion = 24095.995913 eV Total energy + Delta-G solvation = -3875.828651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95639 -40.45849 -38.73450 -36.67908 -35.33852 -34.67414 -32.91447 -31.74706 -30.78887 -28.75754 -27.89409 -27.46123 -26.95406 -25.82645 -24.31088 -22.00480 -21.88422 -21.12780 -20.52620 -19.84920 -17.89790 -17.66234 -17.25505 -17.20869 -17.00435 -16.87820 -16.45542 -16.23761 -15.98391 -15.63547 -15.37160 -14.95250 -14.78229 -14.68559 -14.52210 -14.09401 -13.99175 -13.63997 -13.53882 -13.44816 -13.35214 -13.08228 -13.02348 -12.97905 -12.68416 -12.66588 -12.61863 -12.36771 -12.03595 -11.89714 -11.84837 -11.62411 -11.52554 -11.45820 -11.35395 -11.17482 -10.95323 -10.55746 -10.54149 -10.12648 -9.29539 -9.00105 -8.51724 -6.22636 0.98810 1.31033 1.46553 1.55896 1.56408 2.22855 2.27303 2.71903 2.85127 2.86290 3.03121 3.56086 3.63437 3.78681 3.88240 3.93607 4.06638 4.18744 4.22625 4.27607 4.28871 4.36390 4.40938 4.46860 4.49866 4.52332 4.55156 4.57972 4.64788 4.67062 4.71657 4.75813 4.82957 4.85727 4.89873 4.96578 4.99235 5.06676 5.11103 5.23979 5.25319 5.36050 5.40375 5.44001 5.49739 5.70603 6.00224 6.10271 6.11295 6.33126 6.47750 6.93333 7.19672 8.60608 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.001983 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.541872 B =14117.232040 C =15418.795456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.066 3.934 4 C 0.072 3.928 5 H 0.062 0.938 6 C -0.132 4.132 7 N -0.515 5.515 8 C 0.042 3.958 9 C -0.084 4.084 10 H 0.083 0.917 11 C -0.140 4.140 12 C -0.086 4.086 13 H 0.083 0.917 14 C -0.106 4.106 15 C 0.121 3.879 16 N -0.712 5.712 17 C 0.533 3.467 18 O -0.565 6.565 19 C -0.112 4.112 20 S -0.177 6.177 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.044 3.956 24 N -0.916 5.916 25 Si 0.915 3.085 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.237 1.237 29 C 0.038 3.962 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.417 0.583 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.277 0.723 51 H 0.042 0.958 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.122 -3.374 -30.509 35.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.037 4.037 5 H 0.079 0.921 6 C -0.190 4.190 7 N -0.240 5.240 8 C -0.086 4.086 9 C -0.103 4.103 10 H 0.101 0.899 11 C -0.198 4.198 12 C -0.106 4.106 13 H 0.101 0.899 14 C -0.144 4.144 15 C -0.002 4.002 16 N -0.366 5.366 17 C 0.319 3.681 18 O -0.444 6.444 19 C -0.262 4.262 20 S 0.049 5.951 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.161 4.161 24 N -0.554 5.554 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.161 1.161 29 C -0.090 4.090 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.254 0.746 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.086 0.914 51 H 0.060 0.940 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.331 -2.221 -30.917 35.035 hybrid contribution -0.227 -0.143 0.974 1.011 sum 16.104 -2.364 -29.942 34.080 Atomic orbital electron populations 1.22837 0.80660 1.03349 1.00155 1.87939 1.20016 1.27775 1.95364 1.22647 0.93301 0.84964 1.00187 1.21949 0.93386 0.97074 0.91254 0.92074 1.21665 1.01036 1.00307 0.95978 1.64811 1.12996 1.44655 1.01529 1.23310 0.87277 1.01196 0.96798 1.22078 0.94835 0.99452 0.93951 0.89898 1.21751 0.94458 1.01461 1.02090 1.21992 0.95283 0.99632 0.93657 0.89881 1.21734 0.98708 0.97745 0.96249 1.21460 0.97037 0.97344 0.84377 1.45775 1.46645 1.20126 1.24041 1.19979 0.78538 0.85143 0.84483 1.90684 1.60004 1.20942 1.72758 1.23278 1.02819 1.02770 0.97374 1.84705 1.58821 1.25420 1.26113 1.22458 1.32780 1.04096 1.08269 0.91921 1.25578 0.95106 1.01739 0.93685 1.70013 1.34060 1.39427 1.11932 0.85858 0.80746 0.80363 0.79344 1.18727 1.18288 1.16095 1.22974 0.99071 0.95142 0.91785 0.93149 0.89019 0.94591 0.94106 0.91880 0.91958 0.91607 0.92493 0.89810 0.93284 0.92010 0.91752 0.92608 0.90538 0.89475 0.92320 0.92780 0.74616 0.86904 0.86720 0.91362 0.93995 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.39 -7.62 9.89 -148.98 -1.47 -9.09 16 3 C 0.07 1.04 5.50 71.98 0.40 1.44 16 4 C 0.07 1.02 2.17 44.92 0.10 1.12 16 5 H 0.06 0.76 7.97 -2.39 -0.02 0.74 16 6 C -0.13 -1.66 8.56 71.98 0.62 -1.05 16 7 N -0.52 -8.12 5.06 -857.84 -4.34 -12.45 16 8 C 0.04 0.50 4.83 86.65 0.42 0.92 16 9 C -0.08 -0.93 3.19 -9.59 -0.03 -0.96 16 10 H 0.08 0.99 7.86 -2.39 -0.02 0.97 16 11 C -0.14 -1.20 9.17 71.98 0.66 -0.54 16 12 C -0.09 -1.11 2.60 -9.91 -0.03 -1.14 16 13 H 0.08 1.04 7.85 -2.39 -0.02 1.03 16 14 C -0.11 -1.44 4.52 30.59 0.14 -1.30 16 15 C 0.12 2.49 5.49 86.38 0.47 2.96 16 16 N -0.71 -16.81 5.56 -463.04 -2.57 -19.39 16 17 C 0.53 18.48 7.85 87.66 0.69 19.17 16 18 O -0.57 -24.46 15.86 -3.05 -0.05 -24.51 16 19 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 20 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 21 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 23 C 0.04 2.61 5.50 84.86 0.47 3.08 16 24 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 25 Si 0.91 45.26 27.74 68.60 1.90 47.16 16 26 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 29 C 0.04 0.61 4.64 86.45 0.40 1.01 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.04 0.70 7.12 -2.39 -0.02 0.68 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.64 7.23 -2.39 -0.02 0.63 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.93 7.76 -2.39 -0.02 0.91 16 38 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 39 H 0.05 0.54 7.90 -2.39 -0.02 0.52 16 40 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.05 0.48 8.11 -2.39 -0.02 0.46 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.05 1.27 6.88 -2.39 -0.02 1.26 16 47 H 0.42 7.09 8.47 -92.71 -0.79 6.31 16 48 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 49 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 50 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 51 H 0.04 0.66 7.66 -2.39 -0.02 0.64 16 52 H 0.07 1.29 6.68 -2.39 -0.02 1.27 16 Total: -1.00 -74.48 422.13 -0.55 -75.03 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.05 Total: 16.68 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 6.67 Total: -7.67 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -6.61 Total: -87.53 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.52 Total: -33.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -74.48 -0.55 -75.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102676223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.040 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds