Wall clock time and date at job start Wed Apr 1 2020 03:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.91661 * 2 1 4 4 C 1.54911 * 111.00177 * 236.09542 * 2 1 3 5 5 N 1.47425 * 104.83208 * 204.91575 * 4 2 1 6 6 C 1.36931 * 125.65056 * 204.09918 * 5 4 2 7 7 H 1.07998 * 120.00032 * 180.02562 * 6 5 4 8 8 C 1.38817 * 119.99940 * 0.03793 * 6 5 4 9 9 N 1.31612 * 119.99830 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99763 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47583 * 60.00353 * 10 8 6 12 12 H 1.48510 * 109.47052 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47285 * 299.99973 * 10 8 6 14 14 C 1.47022 * 108.70028 * 24.13181 * 5 4 2 15 15 C 1.54319 * 107.27621 * 358.93910 * 14 5 4 16 16 H 1.08998 * 110.71972 * 96.34130 * 15 14 5 17 17 C 1.52997 * 110.72674 * 219.44609 * 15 14 5 18 18 C 1.53004 * 109.47000 * 293.54456 * 17 15 14 19 19 N 1.46499 * 109.47198 * 179.97438 * 18 17 15 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 18 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 18 23 23 H 1.09004 * 110.66623 * 301.77314 * 22 20 19 24 24 C 1.54707 * 110.75496 * 64.99731 * 22 20 19 25 25 C 1.51641 * 101.92587 * 143.60562 * 24 22 20 26 26 C 1.37745 * 132.16941 * 164.60125 * 25 24 22 27 27 C 1.38341 * 119.97884 * 180.35931 * 26 25 24 28 28 C 1.38284 * 119.76805 * 359.97438 * 27 26 25 29 29 C 1.37935 * 120.34944 * 359.85175 * 28 27 26 30 30 C 1.38875 * 107.04422 * 344.61545 * 25 24 22 31 31 O 1.36133 * 111.23731 * 358.93085 * 30 25 24 32 32 H 1.08999 * 109.47192 * 296.09538 * 1 2 3 33 33 H 1.08998 * 109.46845 * 56.10022 * 1 2 3 34 34 H 1.09000 * 109.47210 * 176.09989 * 1 2 3 35 35 H 1.09002 * 110.36221 * 86.08521 * 4 2 1 36 36 H 1.08997 * 110.46552 * 323.80403 * 4 2 1 37 37 H 0.97006 * 120.00078 * 179.97438 * 9 8 6 38 38 H 1.09007 * 109.88002 * 239.52257 * 14 5 4 39 39 H 1.09004 * 110.01420 * 118.43325 * 14 5 4 40 40 H 1.08995 * 109.47672 * 173.54786 * 17 15 14 41 41 H 1.09006 * 109.46819 * 53.54216 * 17 15 14 42 42 H 1.09009 * 109.46730 * 59.99606 * 18 17 15 43 43 H 1.08998 * 109.46846 * 300.00150 * 18 17 15 44 44 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 45 45 H 1.09000 * 110.93459 * 261.76658 * 24 22 20 46 46 H 1.09000 * 110.93247 * 25.44462 * 24 22 20 47 47 H 1.08003 * 120.00755 * 0.33051 * 26 25 24 48 48 H 1.08001 * 120.11671 * 179.97438 * 27 26 25 49 49 H 1.08005 * 119.82450 * 179.83191 * 28 27 26 50 50 H 1.08001 * 119.87545 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6072 7 1 5.4124 -1.8769 -1.1941 8 6 4.2961 -1.4957 -2.9833 9 7 3.1405 -1.1170 -3.4866 10 14 5.7104 -1.9378 -4.1207 11 1 6.1168 -3.3459 -3.8811 12 1 5.2779 -1.7804 -5.5327 13 1 6.8610 -1.0380 -3.8528 14 6 3.4674 -1.2742 0.6960 15 6 2.0862 -0.8080 1.2023 16 1 1.4479 -1.6632 1.4239 17 6 2.2349 0.0876 2.4338 18 6 2.7848 -0.7362 3.6000 19 7 2.9278 0.1214 4.7791 20 6 3.4036 -0.3910 5.9313 21 8 3.7085 -1.5633 5.9934 22 6 3.5565 0.4926 7.1424 23 1 4.2158 1.3329 6.9248 24 6 2.1772 0.9913 7.6348 25 6 2.3628 0.9905 9.1398 26 6 1.6423 1.5703 10.1607 27 6 2.0505 1.4096 11.4727 28 6 3.1819 0.6657 11.7536 29 6 3.9027 0.0812 10.7331 30 6 3.4968 0.2357 9.4097 31 8 4.0414 -0.2624 8.2658 32 1 -0.3633 0.4520 0.9229 33 1 -0.3633 0.5732 -0.8530 34 1 -0.3633 -1.0253 -0.0699 35 1 2.1560 -0.1720 -2.0836 36 1 1.4525 -1.6704 -1.4043 37 1 3.0233 -1.0670 -4.4482 38 1 4.2426 -0.5998 1.0599 39 1 3.6662 -2.2884 1.0424 40 1 1.2619 0.4969 2.7052 41 1 2.9224 0.9031 2.2091 42 1 3.7580 -1.1456 3.3286 43 1 2.0974 -1.5518 3.8246 44 1 2.6843 1.0590 4.7292 45 1 1.9732 1.9973 7.2680 46 1 1.3859 0.3025 7.3394 47 1 0.7593 2.1505 9.9368 48 1 1.4875 1.8636 12.2749 49 1 3.5029 0.5419 12.7774 50 1 4.7849 -0.4985 10.9612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103205671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:34 Heat of formation + Delta-G solvation = -21.942385 kcal Electronic energy + Delta-G solvation = -29104.351926 eV Core-core repulsion = 25097.291043 eV Total energy + Delta-G solvation = -4007.060884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75325 -39.62078 -38.21088 -37.61209 -35.34071 -33.50004 -33.05913 -31.36906 -30.69554 -30.45413 -29.81092 -26.92556 -25.72270 -24.92142 -23.87469 -22.72045 -22.14083 -21.96277 -20.84638 -19.69920 -19.25079 -18.08008 -17.59396 -17.23364 -16.83330 -16.46515 -15.84258 -15.59455 -15.02215 -14.94260 -14.51454 -14.37281 -13.90711 -13.84511 -13.66620 -13.59483 -13.41008 -13.25289 -13.00981 -12.82665 -12.43930 -12.16917 -12.09476 -12.04064 -11.69031 -11.58727 -11.50193 -11.22192 -11.13778 -11.02823 -10.85578 -10.73031 -10.17792 -10.06551 -9.89681 -9.81669 -9.70978 -9.32846 -9.32500 -9.24216 -8.62533 -8.55729 -6.79929 -5.62760 -3.04129 0.85083 0.96479 2.23906 2.37305 3.15379 3.36002 3.42038 3.46131 3.47451 3.87565 4.03205 4.35975 4.44255 4.51115 4.57127 4.66176 4.79161 4.87214 4.97881 5.06512 5.10660 5.21669 5.22446 5.25776 5.45757 5.51439 5.55305 5.58751 5.64459 5.75079 5.89067 5.89922 5.94410 5.96843 6.05842 6.10528 6.15808 6.20503 6.24709 6.28476 6.32202 6.54952 6.61883 6.69813 6.75394 6.83131 7.01924 7.21854 7.56662 7.66018 7.88821 7.93568 8.39224 9.25187 9.86152 10.51516 11.40814 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.001750 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.488482 B =15993.573085 C =16916.443887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.605 5.605 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.012 4.012 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.115 4.115 18 C 0.118 3.882 19 N -0.721 5.721 20 C 0.515 3.485 21 O -0.513 6.513 22 C 0.064 3.936 23 H 0.115 0.885 24 C -0.098 4.098 25 C -0.176 4.176 26 C -0.067 4.067 27 C -0.150 4.150 28 C -0.084 4.084 29 C -0.136 4.136 30 C 0.107 3.893 31 O -0.273 6.273 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.011 0.989 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.401 0.599 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.132 0.868 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 10.101 27.598 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.375 5.375 20 C 0.298 3.702 21 O -0.387 6.387 22 C 0.004 3.996 23 H 0.133 0.867 24 C -0.136 4.136 25 C -0.176 4.176 26 C -0.085 4.085 27 C -0.168 4.168 28 C -0.102 4.102 29 C -0.155 4.155 30 C 0.062 3.938 31 O -0.186 6.186 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.235 0.765 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.150 0.850 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.624 9.001 27.348 29.336 hybrid contribution 0.553 0.212 -0.679 0.901 sum -5.072 9.213 26.669 28.668 Atomic orbital electron populations 1.21636 0.95768 1.01353 1.00340 1.22633 0.94361 0.99326 0.97080 0.91371 1.21973 0.84100 0.95853 0.94724 1.44485 1.10507 1.78947 0.99131 1.19046 0.91079 1.37628 0.87248 0.90610 1.24778 0.97276 1.02093 0.96607 1.69790 1.22421 1.53920 1.11043 0.86161 0.81244 0.78223 0.79926 1.21237 1.21578 1.21211 1.21370 0.93673 0.97252 0.86409 1.22145 0.98194 0.97636 0.93261 0.90868 1.21787 1.00988 0.98701 0.93891 1.21581 1.02383 0.93295 0.83224 1.45928 1.66367 1.14185 1.10995 1.19957 0.78157 0.88334 0.83723 1.90785 1.47828 1.16462 1.83670 1.23208 0.96405 0.93494 0.86502 0.86749 1.21746 0.96470 1.03738 0.91619 1.20702 0.97511 1.04106 0.95331 1.20316 0.98767 0.98034 0.91432 1.21057 0.98143 1.01481 0.96157 1.20912 0.94612 0.96014 0.98636 1.20303 1.02289 1.04272 0.88617 1.19649 0.92067 0.93872 0.88233 1.86974 1.66369 1.53023 1.12224 0.93861 0.92888 0.93008 0.87780 0.97058 0.93754 0.96016 0.96271 0.91534 0.91114 0.90640 0.91242 0.76513 0.87917 0.88482 0.85585 0.85350 0.85008 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.31 37.16 0.35 -1.63 16 2 C -0.11 -2.04 3.09 -88.46 -0.27 -2.31 16 3 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 4 C 0.16 3.79 5.36 -2.53 -0.01 3.78 16 5 N -0.61 -15.57 3.39 -170.07 -0.58 -16.14 16 6 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 9 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 C 0.14 2.87 5.99 -3.07 -0.02 2.86 16 15 C -0.09 -1.51 2.45 -88.79 -0.22 -1.73 16 16 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 17 C -0.12 -1.38 4.72 -26.73 -0.13 -1.51 16 18 C 0.12 1.43 5.52 -4.04 -0.02 1.41 16 19 N -0.72 -7.05 5.55 -60.29 -0.33 -7.38 16 20 C 0.51 6.27 7.13 -10.99 -0.08 6.19 16 21 O -0.51 -8.89 16.57 -13.50 -0.22 -9.11 16 22 C 0.06 0.60 4.05 -26.99 -0.11 0.50 16 23 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 24 C -0.10 -0.70 6.63 -26.52 -0.18 -0.88 16 25 C -0.18 -1.53 6.27 -104.10 -0.65 -2.18 16 26 C -0.07 -0.47 10.03 -39.72 -0.40 -0.87 16 27 C -0.15 -0.95 10.07 -39.53 -0.40 -1.35 16 28 C -0.08 -0.57 10.02 -39.68 -0.40 -0.96 16 29 C -0.14 -1.20 10.06 -39.30 -0.40 -1.60 16 30 C 0.11 1.14 7.04 -38.96 -0.27 0.86 16 31 O -0.27 -3.46 10.39 -39.22 -0.41 -3.86 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.10 2.82 5.87 -51.93 -0.30 2.52 16 36 H 0.01 0.29 7.99 -51.93 -0.41 -0.12 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.45 7.76 -51.93 -0.40 0.04 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 42 H 0.08 1.08 7.49 -51.92 -0.39 0.69 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.40 2.52 8.47 -40.82 -0.35 2.17 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.73 7.92 -51.93 -0.41 0.32 16 47 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 48 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 49 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 50 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -35.04 403.43 -11.52 -46.56 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.14 Total: -0.73 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -3.45 Total: -6.27 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.35 Total: -49.94 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.63 Total: -12.97 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.04 -11.52 -46.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103205671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.616 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds