Wall clock time and date at job start Wed Apr 1 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99812 * 2 1 4 4 C 1.52993 * 109.46863 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47132 * 185.00412 * 4 3 2 6 6 C 1.53006 * 109.47185 * 304.99862 * 4 3 2 7 7 N 1.46900 * 109.47556 * 65.00106 * 4 3 2 8 8 C 1.46894 * 111.00559 * 154.99999 * 7 4 3 9 9 C 1.52997 * 109.47515 * 180.02562 * 8 7 4 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 H 1.08996 * 110.30549 * 52.82562 * 10 9 8 12 12 C 1.54391 * 110.34229 * 290.53508 * 10 9 8 13 13 N 1.48144 * 104.61804 * 217.26816 * 12 10 9 14 14 C 1.34780 * 127.83668 * 219.60754 * 13 12 10 15 15 O 1.21278 * 119.99768 * 359.94744 * 14 13 12 16 16 C 1.50703 * 120.00152 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47129 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99867 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99939 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31636 * 119.99754 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47177 * 60.00218 * 22 20 18 24 24 H 1.48505 * 109.47044 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47207 * 300.00142 * 22 20 18 26 26 C 1.48146 * 104.32710 * 39.58451 * 13 12 10 27 27 C 1.54292 * 110.33963 * 175.00145 * 10 9 8 28 28 H 1.09000 * 110.34371 * 359.97438 * 27 10 9 29 29 C 1.53004 * 110.33858 * 237.84494 * 27 10 9 30 30 H 1.09004 * 109.47119 * 60.00194 * 1 2 3 31 31 H 1.09003 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47311 * 300.00326 * 1 2 3 33 33 H 1.09001 * 109.47007 * 59.99669 * 3 2 1 34 34 H 1.09000 * 109.46796 * 300.00063 * 3 2 1 35 35 H 1.08997 * 109.47152 * 60.00356 * 6 4 3 36 36 H 1.08994 * 109.47007 * 180.02562 * 6 4 3 37 37 H 1.08999 * 109.46772 * 300.00269 * 6 4 3 38 38 H 1.00899 * 110.99900 * 31.04051 * 7 4 3 39 39 H 1.09002 * 109.47104 * 59.99767 * 8 7 4 40 40 H 1.08998 * 109.46828 * 300.00600 * 8 7 4 41 41 H 1.09002 * 109.47153 * 59.99762 * 9 8 7 42 42 H 1.09001 * 109.46832 * 299.99953 * 9 8 7 43 43 H 1.09003 * 110.40414 * 336.05059 * 12 10 9 44 44 H 1.08997 * 110.40671 * 98.47934 * 12 10 9 45 45 H 1.08998 * 109.46656 * 300.00043 * 16 14 13 46 46 H 1.09000 * 109.46719 * 59.99853 * 16 14 13 47 47 H 0.97006 * 119.99737 * 179.97438 * 21 20 18 48 48 H 1.08997 * 110.40910 * 201.63588 * 26 13 12 49 49 H 1.08998 * 110.40972 * 79.19935 * 26 13 12 50 50 H 1.08996 * 109.47320 * 59.99898 * 29 27 10 51 51 H 1.08998 * 109.46560 * 180.02562 * 29 27 10 52 52 H 1.09004 * 109.46810 * 299.99777 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0903 6 6 3.9780 0.3198 1.1827 7 7 3.9779 0.5624 -1.2543 8 6 5.3599 0.9449 -1.5731 9 6 5.7839 0.2794 -2.8838 10 6 7.2236 0.6775 -3.2154 11 1 7.8774 0.4732 -2.3676 12 6 7.2922 2.1708 -3.6014 13 7 8.3009 2.2310 -4.6847 14 6 9.2448 3.1723 -4.8841 15 8 9.3345 4.1119 -4.1226 16 6 10.1882 3.0574 -6.0536 17 16 11.3295 4.4622 -6.0483 18 6 12.2883 4.0829 -7.4772 19 1 12.0727 3.1943 -8.0518 20 6 13.3198 4.9267 -7.8648 21 7 13.5822 6.0101 -7.1646 22 14 14.3358 4.5250 -9.3799 23 1 13.4496 4.4716 -10.5703 24 1 15.3674 5.5749 -9.5769 25 1 14.9986 3.2087 -9.1968 26 6 8.0373 1.0217 -5.4988 27 6 7.7148 -0.0802 -4.4665 28 1 6.9307 -0.7363 -4.8444 29 6 8.9714 -0.8894 -4.1388 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.5351 -0.6720 1.0931 36 1 5.0646 0.2342 1.1834 37 1 3.6497 0.7817 2.1138 38 1 3.3543 0.7947 -2.0127 39 1 6.0213 0.6203 -0.7697 40 1 5.4217 2.0280 -1.6792 41 1 5.1225 0.6044 -3.6869 42 1 5.7220 -0.8037 -2.7780 43 1 6.3235 2.5143 -3.9645 44 1 7.6136 2.7693 -2.7490 45 1 10.7544 2.1295 -5.9739 46 1 9.6173 3.0561 -6.9822 47 1 14.3035 6.5996 -7.4354 48 1 8.9208 0.7532 -6.0777 49 1 7.1850 1.1857 -6.1582 50 1 8.7449 -1.6099 -3.3530 51 1 9.3061 -1.4179 -5.0314 52 1 9.7585 -0.2163 -3.7989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103904505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:24 Heat of formation + Delta-G solvation = -92.515440 kcal Electronic energy + Delta-G solvation = -27637.588649 eV Core-core repulsion = 23762.911439 eV Total energy + Delta-G solvation = -3874.677210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.05281 -38.88352 -37.81223 -36.60559 -33.67281 -32.42668 -32.28871 -30.57715 -29.26721 -27.78338 -26.79115 -26.40779 -25.85247 -25.41747 -23.64986 -21.39967 -20.93866 -19.95841 -19.31774 -17.67609 -17.10326 -16.55258 -16.41754 -16.30121 -15.97208 -15.59801 -14.98864 -14.85350 -14.78993 -14.46049 -14.26752 -13.87120 -13.85726 -13.56469 -13.34639 -13.05924 -12.82038 -12.73649 -12.60764 -12.47130 -12.20581 -11.97950 -11.94577 -11.83970 -11.62823 -11.59174 -11.29473 -11.14659 -11.03662 -11.03457 -10.81986 -10.75067 -10.72915 -10.57917 -10.09557 -9.81498 -9.37773 -9.05404 -8.73315 -8.53772 -8.23040 -6.49657 -6.20884 -3.91684 2.92803 3.08200 3.23859 3.26452 3.29676 3.33124 3.62226 3.72922 4.20806 4.34501 4.41738 4.43181 4.57453 4.59122 4.82223 4.88521 4.90894 4.93342 4.98531 5.03907 5.09546 5.13998 5.14141 5.17069 5.25476 5.29020 5.33362 5.36042 5.43332 5.47367 5.50830 5.59569 5.63471 5.69018 5.73066 5.75454 5.83611 5.90607 5.94433 5.97362 6.05037 6.08839 6.14036 6.19004 6.44763 6.62660 6.79836 7.05846 7.59724 7.76308 8.35592 8.58581 9.24132 10.86484 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.001678 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.503207 B =16680.362411 C =17179.645033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.060 3.940 4 C 0.085 3.915 5 H 0.057 0.943 6 C -0.135 4.135 7 N -0.678 5.678 8 C 0.054 3.946 9 C -0.104 4.104 10 C -0.098 4.098 11 H 0.083 0.917 12 C 0.111 3.889 13 N -0.629 5.629 14 C 0.554 3.446 15 O -0.518 6.518 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.104 3.896 27 C -0.101 4.101 28 H 0.086 0.914 29 C -0.145 4.145 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.340 0.660 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.269 0.731 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.057 0.943 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.381 -15.522 12.266 31.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.018 4.018 4 C -0.025 4.025 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.311 5.311 8 C -0.075 4.075 9 C -0.142 4.142 10 C -0.118 4.118 11 H 0.101 0.899 12 C -0.012 4.012 13 N -0.366 5.366 14 C 0.343 3.657 15 O -0.393 6.393 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.020 4.020 27 C -0.120 4.120 28 H 0.104 0.896 29 C -0.202 4.202 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.158 0.842 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.076 0.924 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.738 -14.603 13.704 31.057 hybrid contribution 0.144 -0.145 -2.198 2.207 sum -23.594 -14.748 11.507 30.110 Atomic orbital electron populations 1.22751 0.81471 1.02785 0.99733 1.87997 1.19033 1.26919 1.95266 1.22730 0.93507 0.85315 1.00213 1.21608 0.92231 0.96695 0.91936 0.92565 1.21677 1.01040 1.01114 0.95486 1.60444 1.03216 1.62737 1.04657 1.22104 0.89974 0.97476 0.97897 1.21601 0.94683 1.01503 0.96444 1.22204 0.96749 0.94629 0.98176 0.89857 1.22326 0.91652 0.95907 0.91359 1.48989 1.33472 1.24733 1.29383 1.19983 0.79214 0.80468 0.86068 1.90703 1.70402 1.31328 1.46821 1.23499 1.00911 1.07232 0.98023 1.85392 1.34573 1.25665 1.37764 1.22820 1.19720 1.12687 1.13171 0.90991 1.24985 0.96519 0.94463 0.97556 1.70015 1.29762 1.12140 1.38370 0.86226 0.79348 0.78201 0.81732 1.19938 1.20795 1.19932 1.22452 1.01514 0.84278 0.93762 1.22153 0.98503 0.96304 0.95024 0.89601 1.21854 0.97103 0.99660 1.01581 0.94236 0.89592 0.94323 0.92766 0.93442 0.91027 0.92815 0.92953 0.84151 0.90827 0.95010 0.91786 0.90571 0.91689 0.90224 0.89338 0.89369 0.92136 0.89942 0.91264 0.92436 0.92375 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -2.97 9.77 -35.23 -0.34 -3.31 16 3 C 0.06 0.38 5.49 37.15 0.20 0.58 16 4 C 0.08 0.60 3.02 -67.71 -0.20 0.40 16 5 H 0.06 0.39 7.80 -51.93 -0.40 -0.02 16 6 C -0.14 -1.01 9.22 37.16 0.34 -0.67 16 7 N -0.68 -5.14 6.26 -106.73 -0.67 -5.81 16 8 C 0.05 0.41 5.35 -3.83 -0.02 0.39 16 9 C -0.10 -0.75 4.66 -26.73 -0.12 -0.87 16 10 C -0.10 -0.87 2.72 -89.21 -0.24 -1.11 16 11 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 12 C 0.11 1.31 5.87 -2.41 -0.01 1.30 16 13 N -0.63 -9.25 3.32 -169.31 -0.56 -9.81 16 14 C 0.55 10.97 7.93 -10.98 -0.09 10.88 16 15 O -0.52 -12.31 16.13 5.56 0.09 -12.22 16 16 C -0.15 -3.06 5.14 36.01 0.18 -2.88 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.10 1.13 6.47 -2.41 -0.02 1.12 16 27 C -0.10 -0.87 3.30 -89.21 -0.29 -1.17 16 28 H 0.09 0.61 7.71 -51.93 -0.40 0.21 16 29 C -0.14 -1.30 8.91 37.16 0.33 -0.97 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.26 8.02 -51.93 -0.42 -0.15 16 35 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 36 H 0.05 0.41 7.45 -51.93 -0.39 0.02 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.34 2.37 8.28 -39.29 -0.33 2.05 16 39 H 0.07 0.60 7.44 -51.93 -0.39 0.21 16 40 H 0.03 0.25 7.50 -51.93 -0.39 -0.14 16 41 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 44 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 45 H 0.09 1.73 7.95 -51.92 -0.41 1.31 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.08 0.92 7.02 -51.93 -0.36 0.55 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 427.94 15.07 6.45 6.45 Total: -1.00 -34.71 427.94 -9.87 -44.58 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -9.70 Total: -2.07 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 1.37 Total: -4.81 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.50 Total: -41.19 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.25 Total: -15.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -34.71 -9.87 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.934 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds