Wall clock time and date at job start Wed Apr 1 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99812 * 2 1 4 4 C 1.52993 * 109.46863 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47132 * 185.00412 * 4 3 2 6 6 C 1.53006 * 109.47185 * 304.99862 * 4 3 2 7 7 N 1.46900 * 109.47556 * 65.00106 * 4 3 2 8 8 C 1.46894 * 111.00559 * 154.99999 * 7 4 3 9 9 C 1.52997 * 109.47515 * 180.02562 * 8 7 4 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 H 1.08996 * 110.30549 * 52.82562 * 10 9 8 12 12 C 1.54391 * 110.34229 * 290.53508 * 10 9 8 13 13 N 1.48144 * 104.61804 * 217.26816 * 12 10 9 14 14 C 1.34780 * 127.83668 * 219.60754 * 13 12 10 15 15 O 1.21278 * 119.99768 * 359.94744 * 14 13 12 16 16 C 1.50703 * 120.00152 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47129 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99867 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99939 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31636 * 119.99754 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47177 * 60.00218 * 22 20 18 24 24 H 1.48505 * 109.47044 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47207 * 300.00142 * 22 20 18 26 26 C 1.48146 * 104.32710 * 39.58451 * 13 12 10 27 27 C 1.54292 * 110.33963 * 175.00145 * 10 9 8 28 28 H 1.09000 * 110.34371 * 359.97438 * 27 10 9 29 29 C 1.53004 * 110.33858 * 237.84494 * 27 10 9 30 30 H 1.09004 * 109.47119 * 60.00194 * 1 2 3 31 31 H 1.09003 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47311 * 300.00326 * 1 2 3 33 33 H 1.09001 * 109.47007 * 59.99669 * 3 2 1 34 34 H 1.09000 * 109.46796 * 300.00063 * 3 2 1 35 35 H 1.08997 * 109.47152 * 60.00356 * 6 4 3 36 36 H 1.08994 * 109.47007 * 180.02562 * 6 4 3 37 37 H 1.08999 * 109.46772 * 300.00269 * 6 4 3 38 38 H 1.00899 * 110.99900 * 31.04051 * 7 4 3 39 39 H 1.09002 * 109.47104 * 59.99767 * 8 7 4 40 40 H 1.08998 * 109.46828 * 300.00600 * 8 7 4 41 41 H 1.09002 * 109.47153 * 59.99762 * 9 8 7 42 42 H 1.09001 * 109.46832 * 299.99953 * 9 8 7 43 43 H 1.09003 * 110.40414 * 336.05059 * 12 10 9 44 44 H 1.08997 * 110.40671 * 98.47934 * 12 10 9 45 45 H 1.08998 * 109.46656 * 300.00043 * 16 14 13 46 46 H 1.09000 * 109.46719 * 59.99853 * 16 14 13 47 47 H 0.97006 * 119.99737 * 179.97438 * 21 20 18 48 48 H 1.08997 * 110.40910 * 201.63588 * 26 13 12 49 49 H 1.08998 * 110.40972 * 79.19935 * 26 13 12 50 50 H 1.08996 * 109.47320 * 59.99898 * 29 27 10 51 51 H 1.08998 * 109.46560 * 180.02562 * 29 27 10 52 52 H 1.09004 * 109.46810 * 299.99777 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0903 6 6 3.9780 0.3198 1.1827 7 7 3.9779 0.5624 -1.2543 8 6 5.3599 0.9449 -1.5731 9 6 5.7839 0.2794 -2.8838 10 6 7.2236 0.6775 -3.2154 11 1 7.8774 0.4732 -2.3676 12 6 7.2922 2.1708 -3.6014 13 7 8.3009 2.2310 -4.6847 14 6 9.2448 3.1723 -4.8841 15 8 9.3345 4.1119 -4.1226 16 6 10.1882 3.0574 -6.0536 17 16 11.3295 4.4622 -6.0483 18 6 12.2883 4.0829 -7.4772 19 1 12.0727 3.1943 -8.0518 20 6 13.3198 4.9267 -7.8648 21 7 13.5822 6.0101 -7.1646 22 14 14.3358 4.5250 -9.3799 23 1 13.4496 4.4716 -10.5703 24 1 15.3674 5.5749 -9.5769 25 1 14.9986 3.2087 -9.1968 26 6 8.0373 1.0217 -5.4988 27 6 7.7148 -0.0802 -4.4665 28 1 6.9307 -0.7363 -4.8444 29 6 8.9714 -0.8894 -4.1388 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.5351 -0.6720 1.0931 36 1 5.0646 0.2342 1.1834 37 1 3.6497 0.7817 2.1138 38 1 3.3543 0.7947 -2.0127 39 1 6.0213 0.6203 -0.7697 40 1 5.4217 2.0280 -1.6792 41 1 5.1225 0.6044 -3.6869 42 1 5.7220 -0.8037 -2.7780 43 1 6.3235 2.5143 -3.9645 44 1 7.6136 2.7693 -2.7490 45 1 10.7544 2.1295 -5.9739 46 1 9.6173 3.0561 -6.9822 47 1 14.3035 6.5996 -7.4354 48 1 8.9208 0.7532 -6.0777 49 1 7.1850 1.1857 -6.1582 50 1 8.7449 -1.6099 -3.3530 51 1 9.3061 -1.4179 -5.0314 52 1 9.7585 -0.2163 -3.7989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103904505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:23 Heat of formation + Delta-G solvation = -116.142775 kcal Electronic energy + Delta-G solvation = -27638.613207 eV Core-core repulsion = 23762.911439 eV Total energy + Delta-G solvation = -3875.701768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18590 -39.49636 -38.99876 -37.24564 -34.62083 -34.57007 -33.14135 -31.60852 -30.46661 -28.27251 -27.82023 -27.53730 -27.22636 -26.38322 -24.50698 -22.12732 -21.51892 -20.83946 -20.66655 -19.55188 -18.05752 -17.61208 -17.16149 -16.91152 -16.88026 -16.79721 -16.65644 -16.06602 -15.72377 -15.56839 -15.33318 -15.17642 -14.55641 -14.45211 -14.34889 -14.13506 -14.06800 -13.70326 -13.47370 -13.27662 -13.19565 -13.13258 -12.90494 -12.87110 -12.72389 -12.63894 -12.54264 -12.34214 -12.22570 -11.93434 -11.78100 -11.72980 -11.51216 -11.47974 -11.26613 -11.13897 -10.95399 -10.56182 -10.30906 -9.76432 -9.31475 -8.69987 -8.35519 -6.14930 1.22333 1.43649 1.43956 1.54429 1.54523 2.07836 2.26450 2.87867 2.98486 3.12643 3.24652 3.54713 3.58969 3.83230 3.89662 3.93507 4.07667 4.17971 4.23690 4.29825 4.35830 4.39038 4.42023 4.45693 4.50681 4.53085 4.57771 4.60207 4.61195 4.67835 4.74093 4.79062 4.87149 4.88247 4.91071 4.94915 5.02223 5.04645 5.11561 5.14025 5.29041 5.35277 5.36270 5.39954 5.46916 5.57301 6.08721 6.18306 6.31958 6.43720 6.52334 7.05171 7.09838 8.73573 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.001678 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.503207 B =16680.362411 C =17179.645033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.082 3.918 5 H 0.058 0.942 6 C -0.131 4.131 7 N -0.682 5.682 8 C 0.057 3.943 9 C -0.092 4.092 10 C -0.086 4.086 11 H 0.075 0.925 12 C 0.107 3.893 13 N -0.622 5.622 14 C 0.550 3.450 15 O -0.571 6.571 16 C -0.119 4.119 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.094 3.906 27 C -0.091 4.091 28 H 0.117 0.883 29 C -0.144 4.144 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.345 0.655 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.272 0.728 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.970 -18.025 10.802 33.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.028 4.028 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.315 5.315 8 C -0.072 4.072 9 C -0.130 4.130 10 C -0.106 4.106 11 H 0.094 0.906 12 C -0.016 4.016 13 N -0.356 5.356 14 C 0.339 3.661 15 O -0.450 6.450 16 C -0.270 4.270 17 S 0.076 5.924 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.028 4.028 27 C -0.110 4.110 28 H 0.135 0.865 29 C -0.202 4.202 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.164 0.836 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -25.379 -17.167 12.240 32.994 hybrid contribution 0.500 0.547 -1.657 1.816 sum -24.879 -16.620 10.583 31.736 Atomic orbital electron populations 1.22877 0.80258 1.03473 1.00497 1.87957 1.20477 1.27761 1.95449 1.22753 0.92797 0.85045 1.01080 1.21645 0.93013 0.96563 0.91571 0.92383 1.21625 1.00519 1.00490 0.96247 1.60431 1.03177 1.62882 1.04980 1.22046 0.90050 0.97113 0.97979 1.21498 0.93292 1.01768 0.96412 1.22113 0.98037 0.92280 0.98140 0.90607 1.22568 0.91215 0.97914 0.89854 1.48943 1.32033 1.24333 1.30329 1.19722 0.80066 0.80979 0.85342 1.90678 1.72152 1.33798 1.48398 1.23285 0.99854 1.04191 0.99639 1.85581 1.37385 1.30618 1.38772 1.23160 1.20072 1.13220 1.13126 0.89917 1.26142 0.97727 0.94017 1.01152 1.70186 1.30573 1.13446 1.40528 0.84989 0.77437 0.78361 0.77115 1.18570 1.20307 1.18614 1.22845 1.02514 0.83116 0.94341 1.22166 0.99180 0.95736 0.93917 0.86487 1.21858 0.96440 0.99469 1.02405 0.93488 0.89031 0.93514 0.91869 0.92569 0.92464 0.93370 0.92126 0.83646 0.91686 0.95641 0.90562 0.89805 0.89894 0.92498 0.87781 0.87633 0.91949 0.90008 0.88828 0.91148 0.91452 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.82 9.77 -148.98 -1.46 -7.27 16 3 C 0.06 0.69 5.49 71.98 0.39 1.08 16 4 C 0.08 1.08 3.02 44.92 0.14 1.21 16 5 H 0.06 0.75 7.80 -2.39 -0.02 0.73 16 6 C -0.13 -1.89 9.22 71.98 0.66 -1.22 16 7 N -0.68 -9.29 6.26 -491.59 -3.08 -12.37 16 8 C 0.06 0.78 5.35 86.30 0.46 1.25 16 9 C -0.09 -1.06 4.66 30.59 0.14 -0.92 16 10 C -0.09 -1.34 2.72 -9.88 -0.03 -1.37 16 11 H 0.08 1.35 7.71 -2.39 -0.02 1.33 16 12 C 0.11 2.42 5.87 86.54 0.51 2.93 16 13 N -0.62 -17.69 3.32 -807.95 -2.68 -20.36 16 14 C 0.55 22.09 7.93 87.66 0.70 22.78 16 15 O -0.57 -28.33 16.13 -3.02 -0.05 -28.38 16 16 C -0.12 -4.98 5.14 71.24 0.37 -4.62 16 17 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 18 C -0.55 -31.75 9.50 67.95 0.65 -31.11 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.83 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 22 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 C 0.09 1.78 6.47 86.54 0.56 2.34 16 27 C -0.09 -1.28 3.30 -9.88 -0.03 -1.32 16 28 H 0.12 1.06 7.71 -2.39 -0.02 1.04 16 29 C -0.14 -2.26 8.91 71.98 0.64 -1.62 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.53 8.02 -2.39 -0.02 0.51 16 35 H 0.06 0.99 7.56 -2.39 -0.02 0.97 16 36 H 0.05 0.72 7.45 -2.39 -0.02 0.71 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.34 4.12 8.28 -89.70 -0.74 3.38 16 39 H 0.06 1.01 7.44 -2.39 -0.02 0.99 16 40 H 0.03 0.38 7.50 -2.39 -0.02 0.36 16 41 H 0.08 0.75 7.98 -2.39 -0.02 0.73 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.62 7.75 -2.39 -0.02 1.60 16 44 H 0.06 1.57 7.88 -2.39 -0.02 1.55 16 45 H 0.10 4.00 7.95 -2.40 -0.02 3.99 16 46 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 47 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 48 H 0.08 1.60 7.02 -2.39 -0.02 1.59 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -78.52 427.94 0.89 -77.62 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.13 Total: 18.75 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 6.87 Total: -7.80 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -5.47 Total: -88.93 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.50 Total: -35.65 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -78.52 0.89 -77.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.520 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds