Wall clock time and date at job start Wed Apr 1 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99827 * 2 1 4 4 O 1.42899 * 109.47260 * 135.00017 * 3 2 1 5 5 C 1.35654 * 117.00187 * 180.02562 * 4 3 2 6 6 C 1.38710 * 120.14795 * 0.22786 * 5 4 3 7 7 C 1.38057 * 120.08144 * 180.28448 * 6 5 4 8 8 C 1.38553 * 120.39210 * 359.73994 * 7 6 5 9 9 C 1.37779 * 120.29896 * 0.02562 * 8 7 6 10 10 C 1.39713 * 119.90962 * 0.02562 * 9 8 7 11 11 C 1.47534 * 120.19323 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00108 * 187.79685 * 11 10 9 13 13 N 1.34781 * 120.00002 * 7.80172 * 11 10 9 14 14 C 1.47019 * 125.64683 * 354.94854 * 13 11 10 15 15 C 1.54321 * 107.27236 * 178.90679 * 14 13 11 16 16 H 1.09001 * 110.72290 * 96.16745 * 15 14 13 17 17 C 1.52999 * 110.72246 * 219.26635 * 15 14 13 18 18 N 1.46500 * 109.47211 * 291.15522 * 17 15 14 19 19 C 1.36929 * 120.00044 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00305 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99805 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00138 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47332 * 89.99932 * 23 21 19 25 25 H 1.48499 * 109.46885 * 210.00020 * 23 21 19 26 26 H 1.48499 * 109.46942 * 330.00212 * 23 21 19 27 27 C 1.55155 * 103.10032 * 337.71902 * 15 14 13 28 28 H 1.08998 * 111.00501 * 277.51654 * 27 15 14 29 29 C 1.53001 * 111.00315 * 153.66503 * 27 15 14 30 30 C 1.47423 * 125.64856 * 174.91004 * 13 11 10 31 31 H 1.08009 * 119.99755 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00303 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.00150 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47357 * 14.99774 * 3 2 1 35 35 H 1.09007 * 109.47096 * 254.99905 * 3 2 1 36 36 H 1.07998 * 119.96107 * 359.97438 * 6 5 4 37 37 H 1.08007 * 119.80540 * 179.76655 * 7 6 5 38 38 H 1.08000 * 119.84673 * 179.97438 * 8 7 6 39 39 H 1.08008 * 120.04901 * 180.02562 * 9 8 7 40 40 H 1.08998 * 109.88307 * 59.48889 * 14 13 11 41 41 H 1.09002 * 109.88192 * 298.32103 * 14 13 11 42 42 H 1.08997 * 109.47003 * 51.15512 * 17 15 14 43 43 H 1.09005 * 109.47140 * 171.15680 * 17 15 14 44 44 H 0.97004 * 119.99572 * 0.02562 * 18 17 15 45 45 H 0.96997 * 119.99650 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.47330 * 60.00028 * 29 27 15 47 47 H 1.09003 * 109.47176 * 180.02562 * 29 27 15 48 48 H 1.09003 * 109.47485 * 299.99289 * 29 27 15 49 49 H 1.08999 * 110.36574 * 323.00161 * 30 13 11 50 50 H 1.08996 * 110.36864 * 85.21319 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9075 2.3434 1.0787 6 6 3.6559 3.4676 0.3062 7 6 4.4551 4.5864 0.4314 8 6 5.5089 4.5979 1.3308 9 6 5.7703 3.4917 2.1095 10 6 4.9701 2.3524 1.9923 11 6 5.2447 1.1642 2.8227 12 8 4.6406 0.1286 2.6206 13 7 6.1650 1.2269 3.8053 14 6 7.0381 2.3751 4.0896 15 6 7.9014 2.0023 5.3132 16 1 8.8731 1.6220 4.9982 17 6 8.0689 3.2049 6.2442 18 7 8.9055 4.2150 5.5915 19 6 9.1943 5.3868 6.2384 20 1 8.8057 5.5663 7.2299 21 6 9.9866 6.3441 5.6197 22 7 10.2638 7.4707 6.2413 23 14 10.6583 6.0341 3.9044 24 1 9.6930 6.5401 2.8958 25 1 11.9553 6.7395 3.7458 26 1 10.8604 4.5761 3.7081 27 6 7.0722 0.8863 6.0019 28 1 6.2907 1.3121 6.6311 29 6 7.9749 -0.0485 6.8094 30 6 6.4625 0.1556 4.7735 31 1 -0.5400 -0.9354 0.0004 32 1 -0.5400 0.9352 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3854 2.1161 0.2659 35 1 2.4755 1.4868 -0.9927 36 1 2.8368 3.4660 -0.3977 37 1 4.2574 5.4579 -0.1751 38 1 6.1288 5.4776 1.4213 39 1 6.5926 3.5052 2.8097 40 1 6.4335 3.2533 4.3162 41 1 7.6790 2.5751 3.2309 42 1 7.0907 3.6315 6.4661 43 1 8.5439 2.8835 7.1711 44 1 9.2543 4.0539 4.7008 45 1 10.8177 8.1394 5.8091 46 1 8.4964 0.5233 7.5768 47 1 7.3682 -0.8216 7.2811 48 1 8.7032 -0.5139 6.1451 49 1 5.5473 -0.3639 5.0574 50 1 7.1817 -0.5470 4.3528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106331058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:18 Heat of formation + Delta-G solvation = 15.634245 kcal Electronic energy + Delta-G solvation = -30422.401356 eV Core-core repulsion = 26416.969917 eV Total energy + Delta-G solvation = -4005.431439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88315 -39.69447 -37.82424 -37.48997 -34.82112 -34.35246 -33.29502 -31.77100 -31.09854 -30.12668 -29.46444 -27.09508 -26.39283 -25.94819 -23.87261 -22.63733 -22.24980 -21.06021 -20.37412 -20.19802 -19.84052 -17.97087 -17.73309 -17.11731 -16.67131 -16.22358 -15.99596 -15.36904 -15.14655 -14.78628 -14.67751 -14.56763 -14.21292 -14.02608 -13.61612 -13.54236 -13.27627 -12.99180 -12.91709 -12.80919 -12.61976 -12.41614 -12.30883 -12.07269 -11.85584 -11.57303 -11.49971 -11.42122 -11.37708 -11.19437 -10.93389 -10.62036 -10.47074 -10.21791 -10.16355 -9.86674 -9.67311 -9.62971 -9.17346 -8.94981 -8.63794 -8.29843 -7.29500 -5.80988 -3.17387 0.78939 1.28088 1.72697 2.90362 2.98922 3.12683 3.32113 3.33978 3.41513 3.77265 4.31752 4.42540 4.51459 4.54393 4.62407 4.65979 4.73125 4.79068 4.84212 4.91627 5.04959 5.17088 5.18755 5.22784 5.31825 5.40864 5.43414 5.48746 5.49803 5.50969 5.59197 5.67118 5.73538 5.77596 5.87952 5.90040 5.97978 6.04600 6.12883 6.16811 6.18647 6.24793 6.26883 6.36522 6.37254 6.57460 6.58999 6.67846 7.21977 7.55712 7.94302 8.27839 8.37492 9.15821 9.87853 10.06959 11.37322 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.003204 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.085169 B = 8736.326248 C =10733.158012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C 0.080 3.920 4 O -0.277 6.277 5 C 0.182 3.818 6 C -0.226 4.226 7 C -0.054 4.054 8 C -0.164 4.164 9 C -0.081 4.081 10 C -0.169 4.169 11 C 0.577 3.423 12 O -0.526 6.526 13 N -0.616 5.616 14 C 0.093 3.907 15 C -0.108 4.108 16 H 0.088 0.912 17 C 0.167 3.833 18 N -0.756 5.756 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.097 4.097 28 H 0.088 0.912 29 C -0.139 4.139 30 C 0.114 3.886 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.170 0.830 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 -13.504 -11.582 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C 0.005 3.995 4 O -0.188 6.188 5 C 0.134 3.866 6 C -0.245 4.245 7 C -0.072 4.072 8 C -0.182 4.182 9 C -0.099 4.099 10 C -0.173 4.173 11 C 0.367 3.633 12 O -0.404 6.404 13 N -0.350 5.350 14 C -0.029 4.029 15 C -0.127 4.127 16 H 0.106 0.894 17 C 0.040 3.960 18 N -0.402 5.402 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.117 4.117 28 H 0.107 0.893 29 C -0.197 4.197 30 C -0.008 4.008 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.187 0.813 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.192 0.808 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.355 -14.092 -11.482 23.795 hybrid contribution 0.523 0.311 -1.505 1.623 sum -14.832 -13.782 -12.987 24.053 Atomic orbital electron populations 1.23848 0.95361 1.02457 0.99647 1.22660 0.95580 0.97904 1.00477 1.21908 0.88235 0.96996 0.92366 1.86369 1.40970 1.34323 1.57175 1.18960 0.89331 0.85907 0.92370 1.21185 1.04461 0.94313 1.04541 1.21176 0.93118 0.96958 0.95939 1.21171 0.99495 0.99398 0.98112 1.22812 0.98534 0.91007 0.97516 1.19241 0.99433 0.96460 1.02156 1.17666 0.78681 0.87665 0.79294 1.90795 1.49788 1.30940 1.68830 1.48334 1.37542 1.17360 1.31744 1.22680 0.92717 0.89483 0.97983 1.22646 0.98464 0.96757 0.94841 0.89406 1.20645 0.94732 0.86785 0.93834 1.42718 1.61135 1.18232 1.18116 1.19038 1.26004 0.91673 1.00711 0.89171 1.24676 1.00125 0.96292 0.97960 1.69700 1.42417 1.08088 1.37861 0.86603 0.78887 0.77431 0.85968 1.20917 1.21730 1.20287 1.22445 0.98154 0.95601 0.95511 0.89335 1.21683 0.99083 0.98840 1.00064 1.22364 1.00400 0.89984 0.88040 0.87461 0.88344 0.86086 0.91498 0.91038 0.85081 0.85378 0.84883 0.81310 0.89412 0.90694 0.95089 0.94771 0.80764 0.93031 0.91472 0.92494 0.92447 0.90562 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 14.31 29.02 0.42 -0.86 16 2 C -0.15 -1.36 9.89 -36.03 -0.36 -1.72 16 3 C 0.08 0.78 5.15 36.01 0.19 0.97 16 4 O -0.28 -3.95 8.22 -40.40 -0.33 -4.28 16 5 C 0.18 2.55 6.69 -38.70 -0.26 2.29 16 6 C -0.23 -2.52 9.03 -39.47 -0.36 -2.88 16 7 C -0.05 -0.58 10.03 -39.53 -0.40 -0.97 16 8 C -0.16 -2.03 10.02 -39.63 -0.40 -2.42 16 9 C -0.08 -1.12 8.59 -39.20 -0.34 -1.46 16 10 C -0.17 -2.56 5.88 -104.84 -0.62 -3.17 16 11 C 0.58 9.52 7.79 -12.47 -0.10 9.42 16 12 O -0.53 -10.03 15.50 -16.45 -0.25 -10.29 16 13 N -0.62 -8.91 3.33 -175.14 -0.58 -9.50 16 14 C 0.09 1.30 4.26 -3.07 -0.01 1.29 16 15 C -0.11 -1.48 2.44 -88.79 -0.22 -1.70 16 16 H 0.09 1.21 8.04 -51.93 -0.42 0.79 16 17 C 0.17 2.91 5.59 -4.04 -0.02 2.89 16 18 N -0.76 -16.53 5.28 -59.91 -0.32 -16.85 16 19 C -0.24 -6.58 10.47 -15.06 -0.16 -6.74 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.51 13.97 55.49 0.78 -27.73 16 23 Si 0.88 21.03 27.74 -169.99 -4.71 16.32 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.15 6.52 56.52 0.37 -5.79 16 27 C -0.10 -1.13 3.11 -88.21 -0.27 -1.41 16 28 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 29 C -0.14 -1.38 9.32 37.16 0.35 -1.04 16 30 C 0.11 1.44 6.38 -2.27 -0.01 1.43 16 31 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.07 0.55 7.37 -51.93 -0.38 0.17 16 35 H 0.07 0.58 7.67 -51.93 -0.40 0.19 16 36 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.17 2.31 2.77 -57.27 -0.16 2.15 16 40 H 0.09 1.28 6.26 -51.93 -0.32 0.95 16 41 H 0.08 1.01 6.80 -51.93 -0.35 0.66 16 42 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 43 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.36 7.61 5.46 -40.82 -0.22 7.38 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 49 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 50 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -33.66 401.03 -9.69 -43.35 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.64 Total: 8.95 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.66 Total: -6.02 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.12 Total: -54.07 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.59 Total: -14.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.66 -9.69 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106331058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.986 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds