Wall clock time and date at job start Wed Apr 1 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99827 * 2 1 4 4 O 1.42899 * 109.47260 * 135.00017 * 3 2 1 5 5 C 1.35654 * 117.00187 * 180.02562 * 4 3 2 6 6 C 1.38710 * 120.14795 * 0.22786 * 5 4 3 7 7 C 1.38057 * 120.08144 * 180.28448 * 6 5 4 8 8 C 1.38553 * 120.39210 * 359.73994 * 7 6 5 9 9 C 1.37779 * 120.29896 * 0.02562 * 8 7 6 10 10 C 1.39713 * 119.90962 * 0.02562 * 9 8 7 11 11 C 1.47534 * 120.19323 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00108 * 187.79685 * 11 10 9 13 13 N 1.34781 * 120.00002 * 7.80172 * 11 10 9 14 14 C 1.47019 * 125.64683 * 354.94854 * 13 11 10 15 15 C 1.54321 * 107.27236 * 178.90679 * 14 13 11 16 16 H 1.09001 * 110.72290 * 96.16745 * 15 14 13 17 17 C 1.52999 * 110.72246 * 219.26635 * 15 14 13 18 18 N 1.46500 * 109.47211 * 291.15522 * 17 15 14 19 19 C 1.36929 * 120.00044 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00305 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99805 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00138 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47332 * 89.99932 * 23 21 19 25 25 H 1.48499 * 109.46885 * 210.00020 * 23 21 19 26 26 H 1.48499 * 109.46942 * 330.00212 * 23 21 19 27 27 C 1.55155 * 103.10032 * 337.71902 * 15 14 13 28 28 H 1.08998 * 111.00501 * 277.51654 * 27 15 14 29 29 C 1.53001 * 111.00315 * 153.66503 * 27 15 14 30 30 C 1.47423 * 125.64856 * 174.91004 * 13 11 10 31 31 H 1.08009 * 119.99755 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00303 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.00150 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47357 * 14.99774 * 3 2 1 35 35 H 1.09007 * 109.47096 * 254.99905 * 3 2 1 36 36 H 1.07998 * 119.96107 * 359.97438 * 6 5 4 37 37 H 1.08007 * 119.80540 * 179.76655 * 7 6 5 38 38 H 1.08000 * 119.84673 * 179.97438 * 8 7 6 39 39 H 1.08008 * 120.04901 * 180.02562 * 9 8 7 40 40 H 1.08998 * 109.88307 * 59.48889 * 14 13 11 41 41 H 1.09002 * 109.88192 * 298.32103 * 14 13 11 42 42 H 1.08997 * 109.47003 * 51.15512 * 17 15 14 43 43 H 1.09005 * 109.47140 * 171.15680 * 17 15 14 44 44 H 0.97004 * 119.99572 * 0.02562 * 18 17 15 45 45 H 0.96997 * 119.99650 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.47330 * 60.00028 * 29 27 15 47 47 H 1.09003 * 109.47176 * 180.02562 * 29 27 15 48 48 H 1.09003 * 109.47485 * 299.99289 * 29 27 15 49 49 H 1.08999 * 110.36574 * 323.00161 * 30 13 11 50 50 H 1.08996 * 110.36864 * 85.21319 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9075 2.3434 1.0787 6 6 3.6559 3.4676 0.3062 7 6 4.4551 4.5864 0.4314 8 6 5.5089 4.5979 1.3308 9 6 5.7703 3.4917 2.1095 10 6 4.9701 2.3524 1.9923 11 6 5.2447 1.1642 2.8227 12 8 4.6406 0.1286 2.6206 13 7 6.1650 1.2269 3.8053 14 6 7.0381 2.3751 4.0896 15 6 7.9014 2.0023 5.3132 16 1 8.8731 1.6220 4.9982 17 6 8.0689 3.2049 6.2442 18 7 8.9055 4.2150 5.5915 19 6 9.1943 5.3868 6.2384 20 1 8.8057 5.5663 7.2299 21 6 9.9866 6.3441 5.6197 22 7 10.2638 7.4707 6.2413 23 14 10.6583 6.0341 3.9044 24 1 9.6930 6.5401 2.8958 25 1 11.9553 6.7395 3.7458 26 1 10.8604 4.5761 3.7081 27 6 7.0722 0.8863 6.0019 28 1 6.2907 1.3121 6.6311 29 6 7.9749 -0.0485 6.8094 30 6 6.4625 0.1556 4.7735 31 1 -0.5400 -0.9354 0.0004 32 1 -0.5400 0.9352 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3854 2.1161 0.2659 35 1 2.4755 1.4868 -0.9927 36 1 2.8368 3.4660 -0.3977 37 1 4.2574 5.4579 -0.1751 38 1 6.1288 5.4776 1.4213 39 1 6.5926 3.5052 2.8097 40 1 6.4335 3.2533 4.3162 41 1 7.6790 2.5751 3.2309 42 1 7.0907 3.6315 6.4661 43 1 8.5439 2.8835 7.1711 44 1 9.2543 4.0539 4.7008 45 1 10.8177 8.1394 5.8091 46 1 8.4964 0.5233 7.5768 47 1 7.3682 -0.8216 7.2811 48 1 8.7032 -0.5139 6.1451 49 1 5.5473 -0.3639 5.0574 50 1 7.1817 -0.5470 4.3528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106331058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:17 Heat of formation + Delta-G solvation = -3.642734 kcal Electronic energy + Delta-G solvation = -30423.237268 eV Core-core repulsion = 26416.969917 eV Total energy + Delta-G solvation = -4006.267351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92725 -40.71317 -38.97644 -38.48782 -36.52260 -35.04572 -34.45890 -33.52783 -32.16679 -31.15572 -30.78760 -27.91979 -27.46755 -27.20225 -25.15326 -24.08926 -23.19670 -22.35376 -21.36474 -21.23518 -20.73078 -19.59622 -18.89851 -18.25849 -17.66934 -17.11970 -17.02423 -16.57343 -16.41264 -16.09374 -15.86132 -15.63832 -15.43214 -15.24673 -14.77517 -14.61174 -14.43267 -14.26840 -14.11660 -13.87287 -13.68724 -13.49118 -13.40531 -13.26528 -13.07105 -12.82368 -12.71315 -12.55851 -12.34830 -12.22172 -12.08025 -11.94532 -11.80877 -11.68804 -11.53749 -11.31310 -10.97470 -10.84130 -10.47585 -10.12759 -9.78330 -9.26412 -9.25087 -7.97274 -5.31183 -0.19341 0.34016 1.08909 1.42504 1.46147 1.53450 1.79030 1.88509 2.32064 2.53474 2.76837 3.24853 3.33840 3.38926 3.56451 3.68379 3.76229 3.85351 3.97932 3.98526 4.05941 4.14913 4.16495 4.25636 4.30840 4.37944 4.44270 4.46385 4.48708 4.50987 4.66015 4.68965 4.75718 4.80183 4.85273 4.91923 5.01977 5.05691 5.14059 5.20241 5.26453 5.27700 5.33854 5.44081 5.50381 5.57322 5.59899 5.71539 5.81568 6.25631 6.31052 6.42753 7.08327 7.13159 7.87715 8.07700 9.24219 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.003204 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.085169 B = 8736.326248 C =10733.158012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.179 4.179 3 C 0.074 3.926 4 O -0.306 6.306 5 C 0.168 3.832 6 C -0.220 4.220 7 C -0.044 4.044 8 C -0.174 4.174 9 C -0.090 4.090 10 C -0.198 4.198 11 C 0.570 3.430 12 O -0.563 6.563 13 N -0.614 5.614 14 C 0.097 3.903 15 C -0.098 4.098 16 H 0.097 0.903 17 C 0.168 3.832 18 N -0.755 5.755 19 C -0.231 4.231 20 H 0.056 0.944 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.949 3.051 24 H -0.270 1.270 25 H -0.302 1.302 26 H -0.248 1.248 27 C -0.085 4.085 28 H 0.087 0.913 29 C -0.136 4.136 30 C 0.112 3.888 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.027 0.973 43 H 0.035 0.965 44 H 0.367 0.633 45 H 0.257 0.743 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 -14.203 -13.684 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.197 4.197 3 C 0.000 4.000 4 O -0.218 6.218 5 C 0.120 3.880 6 C -0.239 4.239 7 C -0.062 4.062 8 C -0.193 4.193 9 C -0.107 4.107 10 C -0.202 4.202 11 C 0.361 3.639 12 O -0.443 6.443 13 N -0.347 5.347 14 C -0.025 4.025 15 C -0.117 4.117 16 H 0.115 0.885 17 C 0.042 3.958 18 N -0.401 5.401 19 C -0.362 4.362 20 H 0.074 0.926 21 C -0.255 4.255 22 N -0.636 5.636 23 Si 0.776 3.224 24 H -0.195 1.195 25 H -0.229 1.229 26 H -0.173 1.173 27 C -0.105 4.105 28 H 0.105 0.895 29 C -0.193 4.193 30 C -0.009 4.009 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.179 0.821 37 H 0.181 0.819 38 H 0.160 0.840 39 H 0.183 0.817 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.200 0.800 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.240 -14.842 -13.574 25.851 hybrid contribution 0.648 0.518 -0.778 1.137 sum -15.591 -14.324 -14.352 25.578 Atomic orbital electron populations 1.24099 0.94645 1.03872 0.96635 1.22654 0.96365 0.97343 1.03313 1.22170 0.87664 0.97831 0.92301 1.86337 1.42016 1.34981 1.58515 1.19240 0.89287 0.86805 0.92714 1.21526 1.05028 0.93232 1.04073 1.21583 0.91715 0.97793 0.95067 1.21402 1.00350 0.99156 0.98346 1.22791 0.98550 0.91299 0.98102 1.19324 1.01040 0.96465 1.03390 1.18020 0.78483 0.87795 0.79567 1.90758 1.51248 1.32258 1.70069 1.48379 1.37030 1.17866 1.31445 1.22653 0.92571 0.89044 0.98271 1.22516 0.99270 0.95717 0.94238 0.88506 1.20734 0.93525 0.87042 0.94498 1.42671 1.61572 1.17550 1.18331 1.18993 1.24523 0.93215 0.99426 0.92641 1.25504 1.01240 0.96095 1.02665 1.69895 1.44043 1.09527 1.40134 0.85496 0.77544 0.78804 0.80574 1.19548 1.22923 1.17251 1.22392 0.97964 0.94994 0.95153 0.89458 1.21673 0.99042 0.98755 0.99834 1.22486 1.00560 0.89880 0.88012 0.86170 0.86728 0.87550 0.89821 0.89592 0.82077 0.81896 0.83960 0.81700 0.90224 0.89951 0.95522 0.94663 0.79973 0.93464 0.91809 0.90919 0.91691 0.90918 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 14.31 67.78 0.97 -0.99 16 2 C -0.18 -3.18 9.89 25.65 0.25 -2.92 16 3 C 0.07 1.37 5.15 71.24 0.37 1.74 16 4 O -0.31 -8.75 8.22 -68.90 -0.57 -9.32 16 5 C 0.17 4.59 6.69 22.84 0.15 4.74 16 6 C -0.22 -4.38 9.03 22.34 0.20 -4.18 16 7 C -0.04 -0.81 10.03 22.30 0.22 -0.58 16 8 C -0.17 -3.99 10.02 22.24 0.22 -3.77 16 9 C -0.09 -2.42 8.59 22.52 0.19 -2.23 16 10 C -0.20 -6.00 5.88 -20.01 -0.12 -6.12 16 11 C 0.57 19.13 7.79 86.69 0.68 19.80 16 12 O -0.56 -22.12 15.50 16.81 0.26 -21.86 16 13 N -0.61 -17.61 3.33 -826.29 -2.75 -20.35 16 14 C 0.10 2.60 4.26 86.73 0.37 2.97 16 15 C -0.10 -2.55 2.44 -9.61 -0.02 -2.57 16 16 H 0.10 2.41 8.04 -2.39 -0.02 2.39 16 17 C 0.17 5.70 5.59 86.38 0.48 6.18 16 18 N -0.76 -32.23 5.28 -343.45 -1.81 -34.05 16 19 C -0.23 -12.52 10.47 84.04 0.88 -11.64 16 20 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 21 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 22 N -0.99 -61.65 13.97 21.65 0.30 -61.35 16 23 Si 0.95 42.85 27.74 68.60 1.90 44.75 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.25 -9.91 6.52 99.48 0.65 -9.26 16 27 C -0.09 -1.86 3.11 -9.23 -0.03 -1.89 16 28 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 29 C -0.14 -2.39 9.32 71.98 0.67 -1.72 16 30 C 0.11 2.73 6.38 87.02 0.56 3.28 16 31 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.11 1.07 7.90 -2.91 -0.02 1.04 16 33 H 0.11 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.08 1.20 7.37 -2.39 -0.02 1.19 16 35 H 0.09 1.26 7.67 -2.38 -0.02 1.24 16 36 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.17 4.41 2.77 -7.41 -0.02 4.39 16 40 H 0.08 2.29 6.26 -2.39 -0.01 2.28 16 41 H 0.08 2.11 6.80 -2.39 -0.02 2.10 16 42 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 43 H 0.04 1.22 8.12 -2.38 -0.02 1.20 16 44 H 0.37 14.69 5.46 -92.71 -0.51 14.18 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 49 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 50 H 0.08 1.74 8.00 -2.39 -0.02 1.72 16 Total: -1.00 -75.37 401.03 4.22 -71.15 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.37 Total: 34.07 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.52 Total: -3.05 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.26 Total: -115.75 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.31 Total: -31.18 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.90 Total: 44.75 kcal Total: -75.37 4.22 -71.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106331058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.510 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds