Wall clock time and date at job start Wed Apr 1 2020 03:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47077 * 2 1 4 4 N 1.46506 * 109.46726 * 119.99623 * 2 1 3 5 5 C 1.34773 * 119.99968 * 274.99647 * 4 2 1 6 6 O 1.21341 * 120.00351 * 359.73051 * 5 4 2 7 7 C 1.49456 * 119.99966 * 180.02562 * 5 4 2 8 8 O 1.21355 * 119.99792 * 359.72883 * 7 5 4 9 9 N 1.34777 * 119.99994 * 179.73002 * 7 5 4 10 10 C 1.46496 * 119.99614 * 180.02562 * 9 7 5 11 11 H 1.09001 * 109.47676 * 324.99283 * 10 9 7 12 12 C 1.53002 * 109.47093 * 204.99616 * 10 9 7 13 13 C 1.50705 * 109.47013 * 64.99641 * 12 10 9 14 14 H 1.07999 * 119.99750 * 0.02562 * 13 12 10 15 15 C 1.37871 * 120.00068 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00094 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00426 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46785 * 59.99413 * 17 15 13 19 19 H 1.48490 * 109.47579 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46941 * 300.00022 * 17 15 13 21 21 C 1.50700 * 109.47462 * 84.99733 * 10 9 7 22 22 C 1.38237 * 120.00117 * 39.72468 * 21 10 9 23 23 C 1.38226 * 120.00183 * 179.81398 * 22 21 10 24 24 C 1.38236 * 120.00184 * 0.39160 * 23 22 21 25 25 C 1.38241 * 119.99633 * 359.86047 * 24 23 22 26 26 C 1.38229 * 120.00001 * 219.99824 * 21 10 9 27 27 C 1.52995 * 109.47349 * 239.99382 * 2 1 3 28 28 C 1.53776 * 113.61727 * 159.13755 * 27 2 1 29 29 C 1.53948 * 87.01969 * 220.05307 * 28 27 2 30 30 C 1.53780 * 87.11556 * 25.36346 * 29 28 27 31 31 H 1.09002 * 109.46979 * 60.00370 * 1 2 3 32 32 H 1.09001 * 109.47500 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47359 * 300.00329 * 1 2 3 34 34 H 0.97004 * 120.00014 * 95.00498 * 4 2 1 35 35 H 0.96996 * 119.99887 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47360 * 185.00182 * 12 10 9 37 37 H 1.09004 * 109.46912 * 305.00313 * 12 10 9 38 38 H 0.97000 * 120.00557 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.99548 * 359.97438 * 22 21 10 40 40 H 1.08002 * 120.00149 * 180.23111 * 23 22 21 41 41 H 1.08004 * 120.00646 * 179.83427 * 24 23 22 42 42 H 1.07997 * 119.99667 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00238 * 359.97438 * 26 21 10 44 44 H 1.09002 * 112.85243 * 290.34115 * 27 2 1 45 45 H 1.09002 * 113.60944 * 334.57120 * 28 27 2 46 46 H 1.09000 * 113.61222 * 105.47134 * 28 27 2 47 47 H 1.09000 * 113.53644 * 270.80904 * 29 28 27 48 48 H 1.09006 * 113.74525 * 139.94677 * 29 28 27 49 49 H 1.08997 * 113.61283 * 220.09386 * 30 29 28 50 50 H 1.08999 * 113.61307 * 89.18711 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8632 1.1604 2.4104 7 6 2.6456 -0.7225 3.5774 8 8 2.9299 -1.9011 3.5241 9 7 2.7795 -0.0487 4.7370 10 6 3.2688 -0.7391 5.9329 11 1 2.9022 -1.7655 5.9355 12 6 2.7645 -0.0142 7.1824 13 6 1.2624 -0.1156 7.2500 14 1 0.7216 -0.6444 6.4791 15 6 0.5785 0.4669 8.2959 16 7 1.2370 1.1113 9.2344 17 14 -1.2833 0.3407 8.3802 18 1 -1.6801 -1.0889 8.4437 19 1 -1.7728 1.0442 9.5927 20 1 -1.8770 0.9658 7.1710 21 6 4.7758 -0.7440 5.9289 22 6 5.4696 0.3761 5.5105 23 6 6.8518 0.3730 5.5105 24 6 7.5405 -0.7530 5.9213 25 6 6.8467 -1.8750 6.3347 26 6 5.4644 -1.8705 6.3383 27 6 2.0400 -0.7214 -1.2491 28 6 3.4867 -0.3578 -1.6229 29 6 3.0233 -0.3621 -3.0910 30 6 1.6120 -0.0510 -2.5654 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6318 1.1528 35 1 2.5526 0.8934 4.7795 36 1 3.2000 -0.4737 8.0696 37 1 3.0561 1.0351 7.1363 38 1 0.7560 1.5208 9.9705 39 1 4.9315 1.2546 5.1861 40 1 7.3938 1.2494 5.1872 41 1 8.6205 -0.7565 5.9188 42 1 7.3847 -2.7548 6.6552 43 1 4.9224 -2.7470 6.6614 44 1 1.8520 -1.7947 -1.2245 45 1 3.7962 0.6244 -1.2657 46 1 4.2079 -1.1410 -1.3894 47 1 3.1055 -1.3375 -3.5705 48 1 3.4533 0.4412 -3.6894 49 1 0.8222 -0.5870 -3.0916 50 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117608090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:47 Heat of formation + Delta-G solvation = -42.095760 kcal Electronic energy + Delta-G solvation = -30094.357221 eV Core-core repulsion = 26086.422421 eV Total energy + Delta-G solvation = -4007.934800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56574 -39.55713 -38.83515 -37.84522 -35.55154 -34.82010 -32.73830 -31.14669 -30.80939 -30.48382 -28.85774 -26.47085 -25.54579 -25.46666 -24.03667 -22.33148 -21.99019 -21.48741 -20.49885 -19.88153 -19.51593 -18.16970 -16.91294 -16.67546 -16.17462 -16.00725 -15.54455 -15.29243 -15.28251 -14.78524 -14.62801 -14.50445 -14.01312 -13.90756 -13.39186 -13.29667 -13.03218 -12.88346 -12.76896 -12.66032 -12.53930 -12.34082 -12.11928 -11.96100 -11.63022 -11.50314 -11.29199 -11.13655 -10.96026 -10.81329 -10.72804 -10.66182 -10.64398 -10.56159 -10.45996 -9.81522 -9.37785 -9.23827 -9.15476 -8.63395 -8.53516 -8.44892 -8.22967 -6.08604 -4.12518 1.71932 1.77099 1.78329 2.66184 3.30912 3.35228 3.38402 3.57840 3.91498 4.19548 4.27324 4.32608 4.40702 4.41661 4.56265 4.86493 4.93066 5.04750 5.22027 5.23453 5.24953 5.28423 5.34060 5.41009 5.41464 5.44766 5.50436 5.56238 5.61155 5.69005 5.77225 5.87326 5.89955 5.91710 6.06972 6.08487 6.15810 6.30528 6.36980 6.38860 6.51124 6.71068 6.81573 6.82621 7.03795 7.21036 7.36861 7.46783 7.55007 7.81735 7.86928 8.09316 8.23607 8.45770 8.92226 9.52765 11.01855 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.003480 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.771092 B = 8043.946130 C =10862.926866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.091 0.909 4 N -0.701 5.701 5 C 0.509 3.491 6 O -0.519 6.519 7 C 0.502 3.498 8 O -0.534 6.534 9 N -0.665 5.665 10 C 0.182 3.818 11 H 0.091 0.909 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.074 4.074 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.106 4.106 27 C -0.120 4.120 28 C -0.136 4.136 29 C -0.143 4.143 30 C -0.128 4.128 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.413 0.587 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -3.232 -19.899 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.354 5.354 5 C 0.290 3.710 6 O -0.394 6.394 7 C 0.282 3.718 8 O -0.412 6.412 9 N -0.315 5.315 10 C 0.079 3.921 11 H 0.109 0.891 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.076 4.076 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.139 4.139 28 C -0.174 4.174 29 C -0.181 4.181 30 C -0.166 4.166 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.423 -3.093 -19.694 20.945 hybrid contribution -1.066 -0.022 0.236 1.092 sum 5.357 -3.115 -19.458 20.421 Atomic orbital electron populations 1.22173 0.94908 1.02427 1.02774 1.21080 0.94321 0.97225 0.82739 0.89129 1.45816 1.65984 1.14851 1.08754 1.20423 0.78651 0.87071 0.84820 1.90748 1.48432 1.15402 1.84822 1.19979 0.79899 0.87157 0.84779 1.90710 1.50238 1.15258 1.84954 1.45851 1.62433 1.14928 1.08291 1.20420 0.87169 0.98719 0.85816 0.89057 1.19412 0.96374 0.95782 0.89775 1.21073 0.91315 1.35097 1.08695 0.92473 1.24968 0.98460 0.95036 0.95526 1.69941 1.35757 1.35264 1.12001 0.86646 0.85583 0.78303 0.77462 1.20199 1.21253 1.20144 1.20478 0.96580 0.93561 0.96938 1.20957 0.93956 0.97984 0.99711 1.21050 0.94319 0.98085 1.00742 1.21017 0.99263 0.93875 1.00971 1.21045 0.94244 0.98188 1.00617 1.21006 0.94051 0.97849 0.99591 1.22864 0.97036 1.00446 0.93545 1.22992 0.96026 1.02291 0.96068 1.22845 0.96730 1.01920 0.96560 1.22870 0.97203 1.01139 0.95429 0.91423 0.92302 0.91758 0.75376 0.74994 0.94387 0.95481 0.92753 0.86430 0.86636 0.86769 0.86523 0.86063 0.88594 0.89907 0.91281 0.90216 0.91380 0.91189 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.30 37.16 0.35 -1.30 16 2 C 0.15 1.55 2.38 -67.93 -0.16 1.39 16 3 H 0.09 1.05 7.41 -51.93 -0.38 0.66 16 4 N -0.70 -8.74 5.07 -54.24 -0.28 -9.02 16 5 C 0.51 8.21 7.85 -11.58 -0.09 8.12 16 6 O -0.52 -9.37 16.14 5.50 0.09 -9.28 16 7 C 0.50 9.11 7.85 -11.58 -0.09 9.02 16 8 O -0.53 -10.37 16.14 5.49 0.09 -10.29 16 9 N -0.66 -12.66 4.01 -55.36 -0.22 -12.88 16 10 C 0.18 3.71 2.12 -69.08 -0.15 3.56 16 11 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 12 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 13 C -0.52 -14.01 8.84 -34.44 -0.30 -14.31 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.07 -1.37 4.91 -104.63 -0.51 -1.88 16 22 C -0.11 -1.84 9.33 -39.59 -0.37 -2.20 16 23 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 24 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.11 -1.80 9.67 -39.59 -0.38 -2.18 16 27 C -0.12 -0.93 3.29 -89.81 -0.30 -1.23 16 28 C -0.14 -1.06 7.65 -25.83 -0.20 -1.26 16 29 C -0.14 -0.92 8.09 -25.83 -0.21 -1.13 16 30 C -0.13 -0.84 6.75 -25.92 -0.17 -1.02 16 31 H 0.07 0.55 7.50 -51.93 -0.39 0.16 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.41 4.70 8.07 -40.82 -0.33 4.37 16 35 H 0.41 7.87 8.07 -40.82 -0.33 7.54 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.12 1.95 7.71 -52.49 -0.40 1.54 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.70 7.99 -51.93 -0.41 0.29 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 417.44 15.07 6.29 6.29 Total: -1.00 -30.84 417.44 -10.42 -41.26 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.10 Total: 11.66 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -4.01 Total: -9.06 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.24 Total: -46.92 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.18 Total: -19.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -30.84 -10.42 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117608090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.838 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds