Wall clock time and date at job start Wed Apr 1 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47077 * 2 1 4 4 N 1.46506 * 109.46726 * 119.99623 * 2 1 3 5 5 C 1.34773 * 119.99968 * 274.99647 * 4 2 1 6 6 O 1.21341 * 120.00351 * 359.73051 * 5 4 2 7 7 C 1.49456 * 119.99966 * 180.02562 * 5 4 2 8 8 O 1.21355 * 119.99792 * 359.72883 * 7 5 4 9 9 N 1.34777 * 119.99994 * 179.73002 * 7 5 4 10 10 C 1.46496 * 119.99614 * 180.02562 * 9 7 5 11 11 H 1.09001 * 109.47676 * 324.99283 * 10 9 7 12 12 C 1.53002 * 109.47093 * 204.99616 * 10 9 7 13 13 C 1.50705 * 109.47013 * 64.99641 * 12 10 9 14 14 H 1.07999 * 119.99750 * 0.02562 * 13 12 10 15 15 C 1.37871 * 120.00068 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00094 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00426 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46785 * 59.99413 * 17 15 13 19 19 H 1.48490 * 109.47579 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46941 * 300.00022 * 17 15 13 21 21 C 1.50700 * 109.47462 * 84.99733 * 10 9 7 22 22 C 1.38237 * 120.00117 * 39.72468 * 21 10 9 23 23 C 1.38226 * 120.00183 * 179.81398 * 22 21 10 24 24 C 1.38236 * 120.00184 * 0.39160 * 23 22 21 25 25 C 1.38241 * 119.99633 * 359.86047 * 24 23 22 26 26 C 1.38229 * 120.00001 * 219.99824 * 21 10 9 27 27 C 1.52995 * 109.47349 * 239.99382 * 2 1 3 28 28 C 1.53776 * 113.61727 * 159.13755 * 27 2 1 29 29 C 1.53948 * 87.01969 * 220.05307 * 28 27 2 30 30 C 1.53780 * 87.11556 * 25.36346 * 29 28 27 31 31 H 1.09002 * 109.46979 * 60.00370 * 1 2 3 32 32 H 1.09001 * 109.47500 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47359 * 300.00329 * 1 2 3 34 34 H 0.97004 * 120.00014 * 95.00498 * 4 2 1 35 35 H 0.96996 * 119.99887 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47360 * 185.00182 * 12 10 9 37 37 H 1.09004 * 109.46912 * 305.00313 * 12 10 9 38 38 H 0.97000 * 120.00557 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.99548 * 359.97438 * 22 21 10 40 40 H 1.08002 * 120.00149 * 180.23111 * 23 22 21 41 41 H 1.08004 * 120.00646 * 179.83427 * 24 23 22 42 42 H 1.07997 * 119.99667 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00238 * 359.97438 * 26 21 10 44 44 H 1.09002 * 112.85243 * 290.34115 * 27 2 1 45 45 H 1.09002 * 113.60944 * 334.57120 * 28 27 2 46 46 H 1.09000 * 113.61222 * 105.47134 * 28 27 2 47 47 H 1.09000 * 113.53644 * 270.80904 * 29 28 27 48 48 H 1.09006 * 113.74525 * 139.94677 * 29 28 27 49 49 H 1.08997 * 113.61283 * 220.09386 * 30 29 28 50 50 H 1.08999 * 113.61307 * 89.18711 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8632 1.1604 2.4104 7 6 2.6456 -0.7225 3.5774 8 8 2.9299 -1.9011 3.5241 9 7 2.7795 -0.0487 4.7370 10 6 3.2688 -0.7391 5.9329 11 1 2.9022 -1.7655 5.9355 12 6 2.7645 -0.0142 7.1824 13 6 1.2624 -0.1156 7.2500 14 1 0.7216 -0.6444 6.4791 15 6 0.5785 0.4669 8.2959 16 7 1.2370 1.1113 9.2344 17 14 -1.2833 0.3407 8.3802 18 1 -1.6801 -1.0889 8.4437 19 1 -1.7728 1.0442 9.5927 20 1 -1.8770 0.9658 7.1710 21 6 4.7758 -0.7440 5.9289 22 6 5.4696 0.3761 5.5105 23 6 6.8518 0.3730 5.5105 24 6 7.5405 -0.7530 5.9213 25 6 6.8467 -1.8750 6.3347 26 6 5.4644 -1.8705 6.3383 27 6 2.0400 -0.7214 -1.2491 28 6 3.4867 -0.3578 -1.6229 29 6 3.0233 -0.3621 -3.0910 30 6 1.6120 -0.0510 -2.5654 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6318 1.1528 35 1 2.5526 0.8934 4.7795 36 1 3.2000 -0.4737 8.0696 37 1 3.0561 1.0351 7.1363 38 1 0.7560 1.5208 9.9705 39 1 4.9315 1.2546 5.1861 40 1 7.3938 1.2494 5.1872 41 1 8.6205 -0.7565 5.9188 42 1 7.3847 -2.7548 6.6552 43 1 4.9224 -2.7470 6.6614 44 1 1.8520 -1.7947 -1.2245 45 1 3.7962 0.6244 -1.2657 46 1 4.2079 -1.1410 -1.3894 47 1 3.1055 -1.3375 -3.5705 48 1 3.4533 0.4412 -3.6894 49 1 0.8222 -0.5870 -3.0916 50 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117608090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:46 Heat of formation + Delta-G solvation = -59.584566 kcal Electronic energy + Delta-G solvation = -30095.115593 eV Core-core repulsion = 26086.422421 eV Total energy + Delta-G solvation = -4008.693171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86582 -40.65530 -39.87518 -39.13620 -37.05486 -35.97187 -34.74377 -32.60672 -31.78473 -31.71062 -30.59237 -27.43442 -26.89928 -26.14897 -25.44334 -23.83407 -23.38397 -22.46604 -21.66488 -21.26781 -20.43180 -19.41282 -18.63733 -18.05383 -17.64458 -17.10738 -16.90619 -16.66113 -16.38919 -16.08845 -15.98697 -15.61061 -15.17240 -15.13659 -14.83355 -14.47389 -14.28722 -14.20848 -14.04303 -13.71417 -13.60071 -13.50624 -13.36309 -13.12443 -12.96820 -12.78092 -12.65763 -12.58784 -12.45644 -12.21472 -12.18593 -11.89749 -11.64499 -11.45736 -11.39363 -11.31601 -11.16783 -10.69818 -10.56206 -10.26715 -10.16275 -9.77462 -9.55833 -8.22488 -6.32942 0.36816 0.47671 0.54351 1.37838 1.38590 1.40093 1.47802 2.17292 2.38210 2.65670 2.96403 3.11903 3.44628 3.61809 3.68124 3.80403 3.92678 4.00075 4.00443 4.19484 4.23853 4.28981 4.31238 4.37085 4.40559 4.59989 4.70145 4.71777 4.75972 4.81920 4.88491 4.88912 4.96805 5.06048 5.09824 5.12751 5.12907 5.18825 5.22840 5.25893 5.38066 5.39278 5.50957 5.59581 5.62003 5.63043 5.74256 5.77410 6.01702 6.12711 6.17433 6.41525 6.76716 6.78813 6.98408 7.35880 8.88072 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.003480 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.771092 B = 8043.946130 C =10862.926866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.078 0.922 4 N -0.682 5.682 5 C 0.513 3.487 6 O -0.543 6.543 7 C 0.501 3.499 8 O -0.548 6.548 9 N -0.668 5.668 10 C 0.198 3.802 11 H 0.074 0.926 12 C 0.037 3.963 13 C -0.534 4.534 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.272 1.272 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.116 4.116 28 C -0.143 4.143 29 C -0.137 4.137 30 C -0.123 4.123 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.417 0.583 35 H 0.412 0.588 36 H 0.013 0.987 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -4.003 -21.972 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.096 0.904 4 N -0.334 5.334 5 C 0.293 3.707 6 O -0.421 6.421 7 C 0.282 3.718 8 O -0.427 6.427 9 N -0.317 5.317 10 C 0.094 3.906 11 H 0.092 0.908 12 C 0.000 4.000 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.135 4.135 28 C -0.181 4.181 29 C -0.174 4.174 30 C -0.161 4.161 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.254 0.746 35 H 0.248 0.752 36 H 0.031 0.969 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.139 -3.892 -21.808 23.274 hybrid contribution -1.197 0.191 0.846 1.479 sum 5.941 -3.701 -20.961 22.099 Atomic orbital electron populations 1.22146 0.94316 1.02924 1.02505 1.21299 0.94732 0.96806 0.82673 0.90428 1.45853 1.64276 1.15072 1.08243 1.20034 0.78933 0.86706 0.85032 1.90740 1.49991 1.16208 1.85112 1.20348 0.79325 0.87006 0.85131 1.90688 1.50851 1.15852 1.85282 1.45787 1.62731 1.14770 1.08445 1.19957 0.89037 0.96891 0.84721 0.90840 1.19147 0.95147 0.94833 0.90909 1.21374 0.92716 1.34637 1.08483 0.92857 1.25771 1.02988 0.94745 0.95232 1.70054 1.37494 1.36218 1.12635 0.85655 0.80197 0.78532 0.77622 1.19510 1.20620 1.19676 1.20347 0.95144 0.95178 0.99482 1.21053 0.95352 0.97432 1.00496 1.21409 0.93339 0.99609 0.99924 1.21490 1.01197 0.92808 0.98836 1.21422 0.93202 0.99704 0.99528 1.21187 0.95559 0.97481 1.00253 1.22891 0.97095 1.00880 0.92604 1.23020 0.95958 1.01654 0.97441 1.22832 0.96321 1.02672 0.95560 1.22876 0.97765 1.01189 0.94293 0.89162 0.91387 0.94545 0.74571 0.75212 0.96874 0.97289 0.92635 0.87016 0.83876 0.82956 0.83417 0.86185 0.87458 0.90999 0.91468 0.89216 0.90929 0.89827 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.30 71.98 0.67 -2.37 16 2 C 0.15 2.93 2.38 44.99 0.11 3.03 16 3 H 0.08 1.78 7.41 -2.39 -0.02 1.77 16 4 N -0.68 -16.82 5.07 -443.88 -2.25 -19.07 16 5 C 0.51 16.87 7.85 87.27 0.69 17.55 16 6 O -0.54 -20.19 16.14 -3.22 -0.05 -20.25 16 7 C 0.50 18.78 7.85 87.27 0.68 19.47 16 8 O -0.55 -21.77 16.14 -3.26 -0.05 -21.82 16 9 N -0.67 -26.74 4.01 -447.42 -1.80 -28.54 16 10 C 0.20 8.51 2.12 44.25 0.09 8.60 16 11 H 0.07 3.36 7.44 -2.39 -0.02 3.35 16 12 C 0.04 1.89 4.50 29.85 0.13 2.02 16 13 C -0.53 -29.64 8.84 25.60 0.23 -29.41 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 15 C 0.01 0.66 5.46 84.65 0.46 1.12 16 16 N -0.92 -54.87 13.29 21.45 0.28 -54.58 16 17 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 C -0.10 -3.82 4.91 -19.87 -0.10 -3.92 16 22 C -0.12 -4.32 9.33 22.27 0.21 -4.11 16 23 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 24 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 25 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.13 -4.31 9.67 22.27 0.22 -4.09 16 27 C -0.12 -1.59 3.29 -10.27 -0.03 -1.62 16 28 C -0.14 -2.04 7.65 31.18 0.24 -1.80 16 29 C -0.14 -1.44 8.09 31.18 0.25 -1.19 16 30 C -0.12 -1.31 6.75 31.12 0.21 -1.10 16 31 H 0.09 1.29 7.50 -2.39 -0.02 1.27 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.42 9.25 8.07 -92.71 -0.75 8.50 16 35 H 0.41 16.66 8.07 -92.71 -0.75 15.91 16 36 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.11 3.87 7.71 -2.91 -0.02 3.84 16 40 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.12 3.97 8.04 -2.91 -0.02 3.95 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.18 7.99 -2.39 -0.02 1.16 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -68.40 417.44 2.33 -66.06 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.55 Total: 38.81 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.73 Total: -7.07 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.76 Total: -102.19 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.10 Total: -42.07 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.40 2.33 -66.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117608090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.479 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds