Wall clock time and date at job start Wed Apr 1 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47346 * 239.99900 * 2 1 3 5 5 C 1.34769 * 119.99996 * 84.99970 * 4 2 1 6 6 O 1.21346 * 120.00481 * 0.02562 * 5 4 2 7 7 C 1.49453 * 120.00149 * 180.27261 * 5 4 2 8 8 O 1.21357 * 119.99705 * 359.73037 * 7 5 4 9 9 N 1.34777 * 120.00486 * 179.72318 * 7 5 4 10 10 C 1.46500 * 120.00023 * 184.81631 * 9 7 5 11 11 H 1.08993 * 109.46871 * 31.50217 * 10 9 7 12 12 C 1.52992 * 109.47275 * 271.49560 * 10 9 7 13 13 C 1.50701 * 109.47124 * 174.15947 * 12 10 9 14 14 H 1.08003 * 119.99959 * 4.67486 * 13 12 10 15 15 C 1.37874 * 119.99980 * 184.66922 * 13 12 10 16 16 N 1.31516 * 120.00162 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47332 * 59.99840 * 17 15 13 19 19 H 1.48494 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46978 * 299.99881 * 17 15 13 21 21 C 1.50704 * 109.46663 * 151.49907 * 10 9 7 22 22 C 1.38230 * 120.00190 * 39.72719 * 21 10 9 23 23 C 1.38240 * 120.00191 * 179.80940 * 22 21 10 24 24 C 1.38237 * 119.99571 * 0.40188 * 23 22 21 25 25 C 1.38240 * 119.99946 * 359.84864 * 24 23 22 26 26 C 1.38234 * 120.00214 * 359.96592 * 25 24 23 27 27 C 1.53005 * 109.46801 * 119.99554 * 2 1 3 28 28 C 1.53778 * 113.61574 * 274.12328 * 27 2 1 29 29 C 1.53780 * 87.08311 * 220.02155 * 28 27 2 30 30 C 1.53784 * 87.08174 * 25.43524 * 29 28 27 31 31 H 1.08996 * 109.46954 * 184.92144 * 1 2 3 32 32 H 1.09000 * 109.47430 * 304.92680 * 1 2 3 33 33 H 1.08997 * 109.47093 * 64.92386 * 1 2 3 34 34 H 0.97001 * 119.99556 * 265.00135 * 4 2 1 35 35 H 0.96998 * 119.99473 * 4.82155 * 9 7 5 36 36 H 1.08995 * 109.47332 * 294.16188 * 12 10 9 37 37 H 1.08998 * 109.46902 * 54.16519 * 12 10 9 38 38 H 0.97000 * 119.99945 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.00238 * 359.97438 * 22 21 10 40 40 H 1.07997 * 120.00053 * 180.23053 * 23 22 21 41 41 H 1.07999 * 120.00290 * 179.83729 * 24 23 22 42 42 H 1.08005 * 119.99745 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99517 * 179.97438 * 26 25 24 44 44 H 1.08997 * 112.85014 * 45.43510 * 27 2 1 45 45 H 1.09004 * 113.61953 * 334.57087 * 28 27 2 46 46 H 1.09004 * 113.61180 * 105.46944 * 28 27 2 47 47 H 1.09005 * 113.61341 * 270.88981 * 29 28 27 48 48 H 1.08998 * 113.69060 * 139.99622 * 29 28 27 49 49 H 1.08994 * 113.61617 * 220.02506 * 30 29 28 50 50 H 1.08996 * 113.61683 * 89.11384 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3570 6 8 1.8590 1.1592 -2.4115 7 6 2.6396 -0.7243 -3.5788 8 8 2.9281 -1.9018 -3.5243 9 7 2.7630 -0.0534 -4.7412 10 6 3.1441 -0.7675 -5.9622 11 1 2.7596 -1.7866 -5.9221 12 6 4.6692 -0.8020 -6.0780 13 6 5.0646 -1.6572 -7.2541 14 1 4.3049 -2.0672 -7.9033 15 6 6.3959 -1.9163 -7.5016 16 7 7.3209 -1.4174 -6.7109 17 14 6.8860 -2.9759 -8.9599 18 1 6.4041 -2.3446 -10.2147 19 1 8.3649 -3.1024 -9.0051 20 1 6.2785 -4.3236 -8.8189 21 6 2.5653 -0.0590 -7.1598 22 6 2.5532 1.3224 -7.2065 23 6 2.0258 1.9723 -8.3067 24 6 1.5031 1.2407 -9.3566 25 6 1.5105 -0.1408 -9.3077 26 6 2.0413 -0.7907 -8.2091 27 6 2.0399 -0.7212 1.2494 28 6 2.1497 0.1887 2.4842 29 6 3.4640 -0.5413 2.8078 30 6 3.5715 -0.8489 1.3048 31 1 -0.3633 -1.0238 0.0882 32 1 -0.3634 0.5884 0.8425 33 1 -0.3633 0.4355 -0.9308 34 1 2.2491 -1.6318 -1.1525 35 1 2.5996 0.9023 -4.7692 36 1 5.0456 0.2107 -6.2223 37 1 5.0935 -1.2207 -5.1655 38 1 8.2576 -1.6000 -6.8848 39 1 2.9581 1.8941 -6.3845 40 1 2.0198 3.0516 -8.3448 41 1 1.0887 1.7483 -10.2151 42 1 1.1017 -0.7125 -10.1278 43 1 2.0467 -1.8699 -8.1708 44 1 1.5165 -1.6579 1.4407 45 1 2.2843 1.2424 2.2397 46 1 1.3643 0.0211 3.2212 47 1 3.3298 -1.4286 3.4265 48 1 4.2511 0.1166 3.1762 49 1 3.9338 -1.8541 1.0897 50 1 4.0947 -0.0790 0.7379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117608091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:50 Heat of formation + Delta-G solvation = -38.579710 kcal Electronic energy + Delta-G solvation = -29919.242181 eV Core-core repulsion = 25911.459849 eV Total energy + Delta-G solvation = -4007.782332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62761 -39.54885 -38.84282 -37.91101 -35.50608 -34.80981 -32.82965 -31.12844 -30.91270 -30.43703 -28.65861 -26.36234 -25.65870 -25.55847 -23.86498 -22.39697 -22.11365 -21.42544 -20.42496 -19.80119 -19.56612 -18.45227 -16.91033 -16.58685 -16.20315 -15.85589 -15.50729 -15.39232 -15.16364 -14.77621 -14.60312 -14.49908 -13.96687 -13.88767 -13.51891 -13.18301 -12.96083 -12.86553 -12.76648 -12.68636 -12.50138 -12.39251 -12.16256 -12.13259 -11.57791 -11.50818 -11.31662 -11.15987 -10.84723 -10.81838 -10.79320 -10.64164 -10.61642 -10.47968 -10.12593 -9.93318 -9.42125 -9.24247 -9.10077 -8.64895 -8.47605 -8.35453 -8.09750 -6.00629 -4.02685 1.70080 1.79813 1.84620 2.59255 3.34375 3.38409 3.40536 3.52369 3.84288 4.25510 4.30432 4.33947 4.42756 4.47585 4.60901 4.79004 4.92531 4.99212 5.15546 5.21975 5.28256 5.36147 5.37836 5.40324 5.45030 5.50938 5.51413 5.53469 5.65115 5.73400 5.76496 5.90324 5.92055 5.96484 6.00594 6.12589 6.21488 6.29932 6.36030 6.46761 6.61811 6.68619 6.85151 6.89449 7.08148 7.16507 7.41947 7.53290 7.64650 7.76787 7.96389 8.00303 8.30203 8.40449 9.00994 9.60477 11.10948 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.002870 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.808901 B = 9754.581126 C =11700.287797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.697 5.697 5 C 0.511 3.489 6 O -0.526 6.526 7 C 0.502 3.498 8 O -0.516 6.516 9 N -0.689 5.689 10 C 0.179 3.821 11 H 0.093 0.907 12 C 0.025 3.975 13 C -0.514 4.514 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.052 4.052 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.098 4.098 27 C -0.122 4.122 28 C -0.129 4.129 29 C -0.143 4.143 30 C -0.136 4.136 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.412 0.588 35 H 0.404 0.596 36 H 0.018 0.982 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 4.297 12.872 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.109 0.891 4 N -0.351 5.351 5 C 0.292 3.708 6 O -0.402 6.402 7 C 0.281 3.719 8 O -0.392 6.392 9 N -0.341 5.341 10 C 0.077 3.923 11 H 0.111 0.889 12 C -0.013 4.013 13 C -0.553 4.553 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.053 4.053 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.141 4.141 28 C -0.167 4.167 29 C -0.180 4.180 30 C -0.174 4.174 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.240 0.760 36 H 0.036 0.964 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.509 4.299 12.887 19.159 hybrid contribution 0.565 -0.532 -0.889 1.180 sum -12.945 3.767 11.999 18.048 Atomic orbital electron populations 1.22171 0.94956 1.02262 1.02691 1.21096 0.94219 0.97277 0.82882 0.89083 1.45801 1.65548 1.15033 1.08673 1.20417 0.78533 0.86957 0.84875 1.90722 1.48944 1.15476 1.85018 1.19917 0.80090 0.87300 0.84575 1.90784 1.48318 1.15530 1.84563 1.46107 1.67134 1.12740 1.08140 1.20500 0.99303 0.94397 0.78143 0.88878 1.19433 0.85711 0.97773 0.98371 1.21009 0.92045 1.31137 1.11104 0.92252 1.24952 0.96656 0.95992 0.96495 1.69956 1.00519 1.44928 1.37791 0.86662 0.77336 0.81014 0.83068 1.20208 1.21331 1.20147 1.19885 0.95615 0.93541 0.96228 1.20862 1.00115 0.94038 0.98565 1.20988 0.99345 0.99353 0.94126 1.20998 1.01357 0.94224 0.98559 1.21042 1.00371 0.94541 0.97967 1.20965 0.97230 0.99995 0.93465 1.22920 0.97153 0.99833 0.94191 1.22891 0.98006 0.99038 0.96717 1.22814 0.97843 1.00595 0.96776 1.22917 0.95253 1.02700 0.96531 0.92311 0.91449 0.91954 0.75146 0.75988 0.96371 0.94953 0.92932 0.86604 0.86587 0.86797 0.86540 0.85944 0.88509 0.89799 0.91259 0.90183 0.91341 0.91061 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.46 2.40 -67.93 -0.16 1.30 16 3 H 0.09 1.01 7.31 -51.93 -0.38 0.63 16 4 N -0.70 -8.45 4.74 -54.24 -0.26 -8.70 16 5 C 0.51 7.85 7.85 -11.59 -0.09 7.76 16 6 O -0.53 -8.76 16.15 5.50 0.09 -8.68 16 7 C 0.50 9.04 7.88 -11.58 -0.09 8.95 16 8 O -0.52 -10.56 16.13 5.49 0.09 -10.47 16 9 N -0.69 -12.50 4.99 -55.37 -0.28 -12.78 16 10 C 0.18 3.69 2.22 -69.08 -0.15 3.54 16 11 H 0.09 2.02 7.40 -51.93 -0.38 1.63 16 12 C 0.02 0.63 4.75 -27.89 -0.13 0.50 16 13 C -0.51 -14.14 8.64 -34.44 -0.30 -14.43 16 14 H 0.06 1.56 6.44 -52.48 -0.34 1.22 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.05 -0.98 4.50 -104.62 -0.47 -1.45 16 22 C -0.12 -1.99 9.10 -39.58 -0.36 -2.35 16 23 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.10 -1.73 8.63 -39.58 -0.34 -2.08 16 27 C -0.12 -0.95 3.22 -89.80 -0.29 -1.24 16 28 C -0.13 -0.87 7.63 -25.92 -0.20 -1.07 16 29 C -0.14 -1.02 8.08 -25.92 -0.21 -1.23 16 30 C -0.14 -1.18 7.32 -25.91 -0.19 -1.37 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.41 4.74 8.07 -40.82 -0.33 4.41 16 35 H 0.40 6.65 6.35 -40.82 -0.26 6.39 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.12 1.83 6.86 -52.49 -0.36 1.47 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.12 2.10 7.83 -52.49 -0.41 1.68 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 413.61 15.07 6.23 6.23 Total: -1.00 -32.26 413.61 -10.26 -42.52 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.92 Total: 10.64 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.92 Total: -9.41 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.20 Total: -47.50 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.18 Total: -19.15 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.26 -10.26 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117608091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.938 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds