Wall clock time and date at job start Wed Apr 1 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47346 * 239.99900 * 2 1 3 5 5 C 1.34769 * 119.99996 * 84.99970 * 4 2 1 6 6 O 1.21346 * 120.00481 * 0.02562 * 5 4 2 7 7 C 1.49453 * 120.00149 * 180.27261 * 5 4 2 8 8 O 1.21357 * 119.99705 * 359.73037 * 7 5 4 9 9 N 1.34777 * 120.00486 * 179.72318 * 7 5 4 10 10 C 1.46500 * 120.00023 * 184.81631 * 9 7 5 11 11 H 1.08993 * 109.46871 * 31.50217 * 10 9 7 12 12 C 1.52992 * 109.47275 * 271.49560 * 10 9 7 13 13 C 1.50701 * 109.47124 * 174.15947 * 12 10 9 14 14 H 1.08003 * 119.99959 * 4.67486 * 13 12 10 15 15 C 1.37874 * 119.99980 * 184.66922 * 13 12 10 16 16 N 1.31516 * 120.00162 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47332 * 59.99840 * 17 15 13 19 19 H 1.48494 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46978 * 299.99881 * 17 15 13 21 21 C 1.50704 * 109.46663 * 151.49907 * 10 9 7 22 22 C 1.38230 * 120.00190 * 39.72719 * 21 10 9 23 23 C 1.38240 * 120.00191 * 179.80940 * 22 21 10 24 24 C 1.38237 * 119.99571 * 0.40188 * 23 22 21 25 25 C 1.38240 * 119.99946 * 359.84864 * 24 23 22 26 26 C 1.38234 * 120.00214 * 359.96592 * 25 24 23 27 27 C 1.53005 * 109.46801 * 119.99554 * 2 1 3 28 28 C 1.53778 * 113.61574 * 274.12328 * 27 2 1 29 29 C 1.53780 * 87.08311 * 220.02155 * 28 27 2 30 30 C 1.53784 * 87.08174 * 25.43524 * 29 28 27 31 31 H 1.08996 * 109.46954 * 184.92144 * 1 2 3 32 32 H 1.09000 * 109.47430 * 304.92680 * 1 2 3 33 33 H 1.08997 * 109.47093 * 64.92386 * 1 2 3 34 34 H 0.97001 * 119.99556 * 265.00135 * 4 2 1 35 35 H 0.96998 * 119.99473 * 4.82155 * 9 7 5 36 36 H 1.08995 * 109.47332 * 294.16188 * 12 10 9 37 37 H 1.08998 * 109.46902 * 54.16519 * 12 10 9 38 38 H 0.97000 * 119.99945 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.00238 * 359.97438 * 22 21 10 40 40 H 1.07997 * 120.00053 * 180.23053 * 23 22 21 41 41 H 1.07999 * 120.00290 * 179.83729 * 24 23 22 42 42 H 1.08005 * 119.99745 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99517 * 179.97438 * 26 25 24 44 44 H 1.08997 * 112.85014 * 45.43510 * 27 2 1 45 45 H 1.09004 * 113.61953 * 334.57087 * 28 27 2 46 46 H 1.09004 * 113.61180 * 105.46944 * 28 27 2 47 47 H 1.09005 * 113.61341 * 270.88981 * 29 28 27 48 48 H 1.08998 * 113.69060 * 139.99622 * 29 28 27 49 49 H 1.08994 * 113.61617 * 220.02506 * 30 29 28 50 50 H 1.08996 * 113.61683 * 89.11384 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3570 6 8 1.8590 1.1592 -2.4115 7 6 2.6396 -0.7243 -3.5788 8 8 2.9281 -1.9018 -3.5243 9 7 2.7630 -0.0534 -4.7412 10 6 3.1441 -0.7675 -5.9622 11 1 2.7596 -1.7866 -5.9221 12 6 4.6692 -0.8020 -6.0780 13 6 5.0646 -1.6572 -7.2541 14 1 4.3049 -2.0672 -7.9033 15 6 6.3959 -1.9163 -7.5016 16 7 7.3209 -1.4174 -6.7109 17 14 6.8860 -2.9759 -8.9599 18 1 6.4041 -2.3446 -10.2147 19 1 8.3649 -3.1024 -9.0051 20 1 6.2785 -4.3236 -8.8189 21 6 2.5653 -0.0590 -7.1598 22 6 2.5532 1.3224 -7.2065 23 6 2.0258 1.9723 -8.3067 24 6 1.5031 1.2407 -9.3566 25 6 1.5105 -0.1408 -9.3077 26 6 2.0413 -0.7907 -8.2091 27 6 2.0399 -0.7212 1.2494 28 6 2.1497 0.1887 2.4842 29 6 3.4640 -0.5413 2.8078 30 6 3.5715 -0.8489 1.3048 31 1 -0.3633 -1.0238 0.0882 32 1 -0.3634 0.5884 0.8425 33 1 -0.3633 0.4355 -0.9308 34 1 2.2491 -1.6318 -1.1525 35 1 2.5996 0.9023 -4.7692 36 1 5.0456 0.2107 -6.2223 37 1 5.0935 -1.2207 -5.1655 38 1 8.2576 -1.6000 -6.8848 39 1 2.9581 1.8941 -6.3845 40 1 2.0198 3.0516 -8.3448 41 1 1.0887 1.7483 -10.2151 42 1 1.1017 -0.7125 -10.1278 43 1 2.0467 -1.8699 -8.1708 44 1 1.5165 -1.6579 1.4407 45 1 2.2843 1.2424 2.2397 46 1 1.3643 0.0211 3.2212 47 1 3.3298 -1.4286 3.4265 48 1 4.2511 0.1166 3.1762 49 1 3.9338 -1.8541 1.0897 50 1 4.0947 -0.0790 0.7379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117608091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:49 Heat of formation + Delta-G solvation = -57.991111 kcal Electronic energy + Delta-G solvation = -29920.083922 eV Core-core repulsion = 25911.459849 eV Total energy + Delta-G solvation = -4008.624074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91968 -40.68678 -39.92572 -39.19086 -36.97495 -35.96185 -34.85656 -32.68338 -31.84813 -31.68856 -30.40654 -27.51327 -26.82010 -26.28910 -25.33263 -23.95948 -23.51491 -22.39188 -21.61226 -21.21754 -20.53207 -19.64534 -18.66119 -17.96167 -17.57037 -17.05440 -16.86500 -16.56945 -16.43445 -16.18770 -15.96377 -15.60570 -15.26969 -15.12521 -14.94563 -14.54345 -14.25100 -14.18562 -14.05979 -13.90140 -13.54470 -13.33776 -13.17417 -13.14748 -12.92757 -12.84019 -12.73122 -12.69450 -12.51949 -12.23160 -12.05036 -11.91066 -11.67076 -11.47543 -11.37623 -11.28034 -11.15570 -10.68249 -10.56121 -10.29207 -10.20412 -9.72346 -9.49836 -8.19355 -6.28717 0.31772 0.51262 0.58937 1.31644 1.39743 1.42647 1.49748 2.11995 2.39843 2.62222 2.98449 3.15886 3.38773 3.62068 3.67539 3.78121 3.79517 3.99201 4.01409 4.21985 4.23282 4.27554 4.33241 4.38309 4.43860 4.69257 4.70073 4.72969 4.79995 4.85297 4.87122 4.88071 4.97595 5.05464 5.08153 5.11171 5.12710 5.22925 5.23220 5.25538 5.36608 5.42443 5.47431 5.60429 5.62094 5.67479 5.73273 5.82148 5.94551 6.18589 6.20194 6.34840 6.71942 6.83123 6.94438 7.38917 8.93072 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.002870 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.808901 B = 9754.581126 C =11700.287797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.079 0.921 4 N -0.681 5.681 5 C 0.517 3.483 6 O -0.540 6.540 7 C 0.497 3.503 8 O -0.546 6.546 9 N -0.685 5.685 10 C 0.196 3.804 11 H 0.076 0.924 12 C 0.038 3.962 13 C -0.524 4.524 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.961 3.039 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.079 4.079 22 C -0.132 4.132 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.121 4.121 29 C -0.138 4.138 30 C -0.148 4.148 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.416 0.584 35 H 0.412 0.588 36 H -0.004 1.004 37 H -0.011 1.011 38 H 0.262 0.738 39 H 0.118 0.882 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.628 4.667 12.225 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.097 0.903 4 N -0.333 5.333 5 C 0.297 3.703 6 O -0.418 6.418 7 C 0.277 3.723 8 O -0.423 6.423 9 N -0.337 5.337 10 C 0.092 3.908 11 H 0.094 0.906 12 C 0.000 4.000 13 C -0.563 4.563 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.785 3.215 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.079 4.079 22 C -0.150 4.150 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.133 4.133 28 C -0.159 4.159 29 C -0.175 4.175 30 C -0.186 4.186 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.253 0.747 35 H 0.250 0.750 36 H 0.014 0.986 37 H 0.007 0.993 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.475 4.676 12.270 20.295 hybrid contribution 1.145 -0.609 -0.655 1.453 sum -14.330 4.068 11.615 18.889 Atomic orbital electron populations 1.22136 0.93626 1.03254 1.02531 1.21340 0.95188 0.96694 0.82474 0.90330 1.45864 1.63998 1.15153 1.08334 1.19867 0.78944 0.86640 0.84812 1.90714 1.50115 1.15786 1.85150 1.20512 0.79279 0.87114 0.85351 1.90756 1.49578 1.16872 1.85137 1.46004 1.66819 1.13121 1.07771 1.19978 0.95940 0.94516 0.80362 0.90566 1.19183 0.89230 0.95673 0.95940 1.21416 0.92478 1.30886 1.11501 0.91267 1.25905 0.96749 0.97431 0.99497 1.70107 1.00828 1.46621 1.39856 0.85561 0.76940 0.79383 0.79591 1.18933 1.21104 1.19175 1.19771 0.97802 0.94479 0.95863 1.21034 1.00753 0.93420 0.99828 1.21382 0.98093 1.01053 0.93253 1.21477 0.99766 0.93935 0.99215 1.21402 0.99388 0.95446 0.97687 1.21106 0.98328 1.00038 0.94256 1.22942 0.96272 1.00633 0.93482 1.22873 0.98262 0.98576 0.96208 1.22819 0.98100 1.01140 0.95465 1.22943 0.95920 1.01802 0.97912 0.91146 0.89266 0.94012 0.74688 0.74984 0.98612 0.99274 0.92945 0.86426 0.83554 0.83055 0.83665 0.86430 0.86889 0.90068 0.89392 0.88944 0.91367 0.91516 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.15 2.77 2.40 44.99 0.11 2.88 16 3 H 0.08 1.73 7.31 -2.39 -0.02 1.72 16 4 N -0.68 -16.81 4.74 -443.87 -2.10 -18.91 16 5 C 0.52 16.49 7.85 87.27 0.69 17.18 16 6 O -0.54 -18.46 16.15 -3.23 -0.05 -18.51 16 7 C 0.50 18.96 7.88 87.27 0.69 19.65 16 8 O -0.55 -23.72 16.13 -3.27 -0.05 -23.77 16 9 N -0.69 -26.37 4.99 -447.43 -2.23 -28.61 16 10 C 0.20 8.53 2.22 44.24 0.10 8.63 16 11 H 0.08 3.53 7.40 -2.39 -0.02 3.52 16 12 C 0.04 2.04 4.75 29.85 0.14 2.19 16 13 C -0.52 -29.80 8.64 25.60 0.22 -29.57 16 14 H 0.07 3.71 6.44 -2.91 -0.02 3.69 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 17 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C -0.08 -3.01 4.50 -19.87 -0.09 -3.10 16 22 C -0.13 -4.46 9.10 22.27 0.20 -4.26 16 23 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 24 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 25 C -0.12 -3.44 10.05 22.27 0.22 -3.21 16 26 C -0.12 -4.17 8.63 22.27 0.19 -3.98 16 27 C -0.11 -1.62 3.22 -10.26 -0.03 -1.65 16 28 C -0.12 -1.40 7.63 31.12 0.24 -1.17 16 29 C -0.14 -1.77 8.08 31.12 0.25 -1.52 16 30 C -0.15 -2.53 7.32 31.12 0.23 -2.31 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.42 9.77 8.07 -92.71 -0.75 9.02 16 35 H 0.41 14.32 6.35 -92.71 -0.59 13.73 16 36 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.12 3.79 6.86 -2.91 -0.02 3.77 16 40 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.12 4.10 7.83 -2.91 -0.02 4.08 16 44 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.00 7.92 -2.39 -0.02 0.99 16 46 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -72.92 413.61 2.23 -70.69 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.39 Total: 37.47 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 4.75 Total: -7.64 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -4.05 Total: -105.18 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.10 Total: -42.28 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.92 2.23 -70.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117608091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.701 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds