Wall clock time and date at job start Wed Apr 1 2020 03:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47185 * 2 1 4 4 C 1.50695 * 109.47164 * 239.99766 * 2 1 3 5 5 C 1.38238 * 120.00097 * 295.96845 * 4 2 1 6 6 C 1.38232 * 119.99980 * 179.78371 * 5 4 2 7 7 C 1.38234 * 120.00133 * 0.46454 * 6 5 4 8 8 C 1.38236 * 119.99907 * 359.77094 * 7 6 5 9 9 C 1.38233 * 120.00245 * 116.23858 * 4 2 1 10 10 N 1.46501 * 109.46609 * 120.00022 * 2 1 3 11 11 C 1.46498 * 120.00252 * 55.95842 * 10 2 1 12 12 C 1.34778 * 119.99909 * 235.94998 * 10 2 1 13 13 O 1.21355 * 119.99824 * 4.81983 * 12 10 2 14 14 C 1.49444 * 120.00296 * 184.81573 * 12 10 2 15 15 O 1.21349 * 120.00266 * 84.39606 * 14 12 10 16 16 N 1.34778 * 120.00505 * 264.40089 * 14 12 10 17 17 C 1.46927 * 120.62574 * 355.78835 * 16 14 12 18 18 C 1.53190 * 108.77588 * 126.39227 * 17 16 14 19 19 C 1.53040 * 109.31189 * 54.63689 * 18 17 16 20 20 C 1.53049 * 109.53597 * 298.63601 * 19 18 17 21 21 H 1.08998 * 109.49350 * 301.41327 * 20 19 18 22 22 C 1.50695 * 109.52321 * 181.33339 * 20 19 18 23 23 H 1.08006 * 119.99944 * 0.14659 * 22 20 19 24 24 C 1.37871 * 120.00180 * 180.14286 * 22 20 19 25 25 N 1.31517 * 119.99795 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 120.00161 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47158 * 60.00469 * 26 24 22 28 28 H 1.48508 * 109.47268 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47394 * 299.99907 * 26 24 22 30 30 C 1.46925 * 120.63544 * 175.79275 * 16 14 12 31 31 H 1.09001 * 109.47102 * 300.00074 * 1 2 3 32 32 H 1.09004 * 109.46950 * 59.99652 * 1 2 3 33 33 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 34 34 H 1.08003 * 119.99797 * 359.97438 * 5 4 2 35 35 H 1.08006 * 120.00092 * 180.25359 * 6 5 4 36 36 H 1.07996 * 120.00308 * 179.78161 * 7 6 5 37 37 H 1.08002 * 119.99999 * 179.97438 * 8 7 6 38 38 H 1.08006 * 119.99629 * 359.97438 * 9 4 2 39 39 H 1.08997 * 109.46935 * 206.40711 * 11 10 2 40 40 H 1.09000 * 109.47340 * 326.40761 * 11 10 2 41 41 H 1.09001 * 109.47529 * 86.41136 * 11 10 2 42 42 H 1.09002 * 109.58791 * 6.60818 * 17 16 14 43 43 H 1.08999 * 109.58933 * 246.18169 * 17 16 14 44 44 H 1.09006 * 109.50059 * 294.68361 * 18 17 16 45 45 H 1.09000 * 109.49984 * 174.58623 * 18 17 16 46 46 H 1.08997 * 109.46084 * 178.61934 * 19 18 17 47 47 H 1.08999 * 109.44946 * 58.64944 * 19 18 17 48 48 H 0.96998 * 119.99839 * 179.97438 * 25 24 22 49 49 H 1.09002 * 109.58522 * 113.82213 * 30 16 14 50 50 H 1.08997 * 109.58424 * 353.39122 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7685 -2.0557 -1.4079 6 6 2.2255 -2.7064 -2.5387 7 6 2.9545 -2.0140 -3.4874 8 6 3.2225 -0.6698 -3.3076 9 6 2.7617 -0.0182 -2.1789 10 7 2.0182 -0.6906 1.1962 11 6 1.5927 -2.0647 1.4737 12 6 2.8590 -0.0619 2.0414 13 8 3.1427 1.1039 1.8594 14 6 3.4418 -0.8003 3.2026 15 8 4.4396 -1.4747 3.0539 16 7 2.8593 -0.7174 4.4151 17 6 1.7059 0.1666 4.6325 18 6 0.5645 -0.6531 5.2425 19 6 1.0652 -1.3555 6.5067 20 6 2.2055 -2.3099 6.1444 21 1 1.8517 -3.0392 5.4156 22 6 2.6763 -3.0255 7.3842 23 1 2.2078 -2.8223 8.3359 24 6 3.7052 -3.9397 7.3037 25 7 4.2761 -4.1869 6.1449 26 14 4.2894 -4.8262 8.8406 27 1 3.1648 -5.6023 9.4221 28 1 5.3984 -5.7491 8.4885 29 1 4.7701 -3.8317 9.8333 30 6 3.3654 -1.5090 5.5447 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.2027 -2.5977 -0.6645 35 1 2.0158 -3.7565 -2.6793 36 1 3.3145 -2.5231 -4.3691 37 1 3.7924 -0.1290 -4.0486 38 1 2.9712 1.0320 -2.0383 39 1 1.6387 -2.2496 2.5469 40 1 0.5700 -2.2061 1.1241 41 1 2.2529 -2.7610 0.9565 42 1 1.3843 0.5886 3.6804 43 1 1.9844 0.9695 5.3150 44 1 0.2262 -1.3981 4.5222 45 1 -0.2629 0.0089 5.4977 46 1 0.2483 -1.9198 6.9563 47 1 1.4263 -0.6112 7.2165 48 1 5.0002 -4.8297 6.0884 49 1 3.7792 -0.8426 6.3016 50 1 4.1388 -2.1925 5.1943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118428355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:08 Heat of formation + Delta-G solvation = -56.628749 kcal Electronic energy + Delta-G solvation = -31404.992963 eV Core-core repulsion = 27396.427965 eV Total energy + Delta-G solvation = -4008.564997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.19289 -40.67675 -39.64378 -38.45081 -37.35102 -35.33695 -33.66244 -33.40231 -31.86543 -31.64262 -30.27075 -28.38289 -27.70641 -26.84851 -25.20937 -23.81408 -23.51368 -23.40739 -21.72063 -20.89587 -19.93479 -18.92762 -18.35182 -18.14878 -17.70857 -17.64135 -16.61432 -16.46937 -16.09275 -16.04315 -15.61778 -15.47899 -15.26191 -15.00999 -14.69900 -14.63267 -14.41842 -14.37126 -14.23034 -13.93423 -13.64499 -13.57866 -13.35377 -13.23129 -13.00389 -12.85933 -12.76903 -12.60288 -12.43062 -12.31448 -12.27171 -11.92890 -11.85049 -11.78924 -11.66711 -11.12412 -10.96143 -10.60760 -10.49735 -10.02265 -9.82323 -9.71491 -9.63951 -8.10696 -6.26195 0.31231 0.48462 0.93305 1.05757 1.43396 1.44623 1.51999 1.52594 2.27308 2.43938 2.87616 3.09828 3.19335 3.59388 3.87587 3.90000 3.98468 4.07954 4.09413 4.14363 4.26617 4.27014 4.28424 4.41981 4.52643 4.59454 4.63413 4.66807 4.71171 4.74253 4.76406 4.78419 4.91122 5.04921 5.07647 5.12766 5.18464 5.22072 5.24210 5.26603 5.31823 5.42134 5.53833 5.59866 5.60409 5.60945 5.86501 5.87649 5.95415 6.08657 6.28691 6.32826 6.56504 6.79685 6.88843 7.43908 8.92635 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.003018 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.481626 B = 9275.450163 C =10031.737844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.172 3.828 3 H 0.097 0.903 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.129 4.129 7 C -0.124 4.124 8 C -0.128 4.128 9 C -0.122 4.122 10 N -0.577 5.577 11 C 0.065 3.935 12 C 0.527 3.473 13 O -0.544 6.544 14 C 0.501 3.499 15 O -0.562 6.562 16 N -0.585 5.585 17 C 0.102 3.898 18 C -0.120 4.120 19 C -0.106 4.106 20 C 0.044 3.956 21 H 0.001 0.999 22 C -0.534 4.534 23 H 0.063 0.937 24 C 0.013 3.987 25 N -0.913 5.913 26 Si 0.954 3.046 27 H -0.267 1.267 28 H -0.291 1.291 29 H -0.271 1.271 30 C 0.122 3.878 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.260 0.740 49 H 0.040 0.960 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 7.129 -16.863 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.071 3.929 3 H 0.115 0.885 4 C -0.113 4.113 5 C -0.139 4.139 6 C -0.147 4.147 7 C -0.142 4.142 8 C -0.146 4.146 9 C -0.140 4.140 10 N -0.310 5.310 11 C -0.077 4.077 12 C 0.310 3.690 13 O -0.422 6.422 14 C 0.283 3.717 15 O -0.440 6.440 16 N -0.317 5.317 17 C -0.019 4.019 18 C -0.158 4.158 19 C -0.144 4.144 20 C 0.024 3.976 21 H 0.019 0.981 22 C -0.572 4.572 23 H 0.081 0.919 24 C -0.187 4.187 25 N -0.552 5.552 26 Si 0.780 3.220 27 H -0.192 1.192 28 H -0.217 1.217 29 H -0.196 1.196 30 C 0.001 3.999 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.515 7.287 -17.094 21.860 hybrid contribution 1.236 -0.777 0.895 1.713 sum -10.278 6.510 -16.199 20.259 Atomic orbital electron populations 1.22116 0.90616 1.04016 1.03932 1.20241 0.96587 0.96196 0.79916 0.88461 1.20143 0.99962 0.95232 0.95982 1.21464 1.00292 0.93905 0.98253 1.21482 0.98168 1.00990 0.94072 1.21524 0.98110 0.94618 0.99957 1.21426 0.99976 0.95387 0.97822 1.21278 0.97483 1.00606 0.94675 1.47957 1.44066 1.15878 1.23116 1.22222 1.02785 0.80846 1.01849 1.20148 0.78631 0.86424 0.83803 1.90720 1.60355 1.16048 1.75079 1.20587 0.84817 0.81401 0.84884 1.90785 1.26717 1.41960 1.84570 1.48610 1.31382 1.42602 1.09149 1.22032 0.85477 0.92472 1.01961 1.21897 0.96966 0.99500 0.97419 1.21542 0.97886 0.98011 0.96973 1.18884 0.91538 0.92544 0.94595 0.98126 1.21467 1.18020 1.22674 0.95085 0.91854 1.25826 0.96725 0.97528 0.98576 1.70034 1.24814 1.34808 1.25516 0.85674 0.77863 0.78498 0.80009 1.19185 1.21669 1.19612 1.21989 1.00364 0.92597 0.84942 0.91092 0.89329 0.90531 0.84495 0.84112 0.83951 0.84154 0.85608 0.92265 0.86003 0.92023 0.89660 0.90019 0.91730 0.87558 0.92030 0.92645 0.93109 0.94208 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.93 71.98 0.64 -1.51 16 2 C 0.17 3.77 2.96 44.24 0.13 3.90 16 3 H 0.10 2.40 6.65 -2.39 -0.02 2.38 16 4 C -0.11 -2.44 4.97 -19.87 -0.10 -2.54 16 5 C -0.12 -2.40 8.00 22.27 0.18 -2.22 16 6 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 7 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 8 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 9 C -0.12 -2.57 9.67 22.27 0.22 -2.35 16 10 N -0.58 -15.94 2.75 -828.39 -2.28 -18.22 16 11 C 0.06 1.60 8.17 127.77 1.04 2.65 16 12 C 0.53 19.14 5.46 87.27 0.48 19.61 16 13 O -0.54 -21.41 16.41 -3.26 -0.05 -21.47 16 14 C 0.50 21.80 5.63 87.27 0.49 22.29 16 15 O -0.56 -29.74 16.53 -3.24 -0.05 -29.79 16 16 N -0.58 -23.89 2.97 -820.50 -2.44 -26.33 16 17 C 0.10 3.10 6.35 86.36 0.55 3.65 16 18 C -0.12 -3.27 6.08 30.67 0.19 -3.08 16 19 C -0.11 -3.80 5.11 30.62 0.16 -3.64 16 20 C 0.04 2.06 2.25 -11.46 -0.03 2.04 16 21 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 22 C -0.53 -28.07 8.56 25.60 0.22 -27.85 16 23 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 24 C 0.01 0.72 5.30 84.65 0.45 1.17 16 25 N -0.91 -53.51 11.39 21.45 0.24 -53.26 16 26 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 30 C 0.12 5.97 5.39 86.36 0.47 6.44 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 0.92 6.07 -2.39 -0.01 0.91 16 34 H 0.14 2.30 4.94 -2.91 -0.01 2.29 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.13 2.44 7.95 -2.91 -0.02 2.42 16 39 H 0.06 1.79 6.84 -2.39 -0.02 1.77 16 40 H 0.12 1.94 5.53 -2.39 -0.01 1.93 16 41 H 0.06 1.61 6.98 -2.39 -0.02 1.60 16 42 H 0.09 2.32 6.29 -2.39 -0.02 2.30 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 49 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.08 4.75 5.14 -2.39 -0.01 4.74 16 Total: -1.00 -73.09 393.78 4.14 -68.95 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.94 Total: 22.55 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.75 Total: 12.44 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -4.47 Total: -97.81 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.11 Total: -51.26 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -73.09 4.14 -68.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118428355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.324 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds