Wall clock time and date at job start Wed Apr 1 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34847 * 116.99694 * 2 1 4 4 O 1.21561 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.47008 * 119.99648 * 179.97438 * 3 2 1 6 6 C 1.39574 * 120.48761 * 354.34318 * 5 3 2 7 7 C 1.37802 * 120.13569 * 180.02562 * 6 5 3 8 8 C 1.39407 * 121.20346 * 359.97438 * 7 6 5 9 9 N 1.39156 * 119.50425 * 179.97438 * 8 7 6 10 10 C 1.46501 * 119.99458 * 359.97438 * 9 8 7 11 11 H 1.08994 * 109.36860 * 325.26006 * 10 9 8 12 12 C 1.53151 * 109.36449 * 205.63472 * 10 9 8 13 13 C 1.54020 * 108.50826 * 185.81945 * 12 10 9 14 14 H 1.09001 * 113.71749 * 188.32321 * 13 12 10 15 15 C 1.54994 * 107.04975 * 314.10981 * 13 12 10 16 16 C 1.54060 * 104.76001 * 87.41584 * 15 13 12 17 17 N 1.48241 * 106.70241 * 358.99549 * 16 15 13 18 18 C 1.47682 * 108.91296 * 271.82253 * 17 16 15 19 19 C 1.48805 * 105.17447 * 27.47552 * 17 16 15 20 20 H 1.08992 * 110.93481 * 75.44284 * 19 17 16 21 21 C 1.52998 * 110.93308 * 199.11350 * 19 17 16 22 22 C 1.38443 * 120.99874 * 359.70783 * 8 7 6 23 23 C 1.40500 * 119.76428 * 0.58639 * 22 8 7 24 24 C 1.40942 * 120.56389 * 179.70115 * 23 22 8 25 25 H 1.08000 * 120.00009 * 146.75219 * 24 23 22 26 26 C 1.40256 * 120.00225 * 326.74522 * 24 23 22 27 27 N 1.30637 * 119.99996 * 166.50327 * 26 24 23 28 28 Si 1.86800 * 119.99672 * 346.23363 * 26 24 23 29 29 H 1.48497 * 109.47147 * 89.85247 * 28 26 24 30 30 H 1.48495 * 109.46908 * 209.85185 * 28 26 24 31 31 H 1.48498 * 109.47194 * 329.85181 * 28 26 24 32 32 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47505 * 299.99991 * 1 2 3 34 34 H 1.09004 * 109.47244 * 59.99865 * 1 2 3 35 35 H 1.07993 * 119.92888 * 0.02859 * 6 5 3 36 36 H 1.08005 * 119.39510 * 180.02562 * 7 6 5 37 37 H 0.96995 * 120.00326 * 179.97438 * 9 8 7 38 38 H 1.09007 * 109.63034 * 305.52237 * 12 10 9 39 39 H 1.08994 * 109.63343 * 66.11211 * 12 10 9 40 40 H 1.08999 * 110.38042 * 328.60045 * 15 13 12 41 41 H 1.08990 * 110.37973 * 206.23542 * 15 13 12 42 42 H 1.08999 * 110.01610 * 239.68428 * 16 15 13 43 43 H 1.09003 * 110.01218 * 118.30076 * 16 15 13 44 44 H 1.08992 * 109.50171 * 287.13682 * 18 17 16 45 45 H 1.09009 * 109.53207 * 167.03887 * 18 17 16 46 46 H 1.08993 * 109.47741 * 59.43939 * 21 19 17 47 47 H 1.09003 * 109.47372 * 179.44350 * 21 19 17 48 48 H 1.09007 * 109.46776 * 299.43934 * 21 19 17 49 49 H 1.07998 * 120.11434 * 180.31505 * 22 8 7 50 50 H 0.96999 * 119.99786 * 179.72880 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4020 2.2210 0.0005 5 6 3.5322 1.2785 0.0006 6 6 4.3019 0.1203 0.1197 7 6 5.6776 0.2008 0.1199 8 6 6.3292 1.4276 0.0020 9 7 7.7202 1.4680 0.0068 10 6 8.4885 0.2272 0.1358 11 1 7.9549 -0.4620 0.7902 12 6 9.8599 0.5398 0.7415 13 6 10.7035 -0.7488 0.7326 14 1 11.6448 -0.6603 1.2750 15 6 9.7976 -1.8887 1.2639 16 6 9.0647 -2.4207 0.0176 17 7 9.5238 -1.6009 -1.1290 18 6 8.6566 -0.4111 -1.2444 19 6 10.8900 -1.1426 -0.7579 20 1 11.6132 -1.9516 -0.8593 21 6 11.3065 0.0684 -1.5950 22 6 5.6135 2.6058 -0.1254 23 6 4.2089 2.5722 -0.1242 24 6 3.4635 3.7621 -0.2466 25 1 2.5149 3.7544 -0.7627 26 6 3.9536 4.9563 0.3021 27 7 3.4113 6.0979 -0.0283 28 14 5.3769 4.9135 1.5112 29 1 6.6595 5.0148 0.7697 30 1 5.2591 6.0541 2.4548 31 1 5.3434 3.6376 2.2703 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 3.8184 -0.8410 0.2118 36 1 6.2615 -0.7030 0.2123 37 1 8.1810 2.3175 -0.0752 38 1 10.3566 1.3068 0.1471 39 1 9.7365 0.8896 1.7664 40 1 9.0818 -1.4987 1.9875 41 1 10.4025 -2.6760 1.7134 42 1 7.9873 -2.3143 0.1445 43 1 9.3198 -3.4677 -0.1466 44 1 7.6811 -0.7078 -1.6294 45 1 9.1131 0.3079 -1.9248 46 1 10.5996 0.8822 -1.4338 47 1 12.3046 0.3899 -1.2975 48 1 11.3122 -0.2042 -2.6505 49 1 6.1331 3.5477 -0.2210 50 1 3.7476 6.9234 0.3542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170977452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:23 Heat of formation + Delta-G solvation = -39.248924 kcal Electronic energy + Delta-G solvation = -31232.455572 eV Core-core repulsion = 27224.644220 eV Total energy + Delta-G solvation = -4007.811352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45246 -39.21330 -37.86206 -35.53557 -34.76332 -33.55335 -32.23518 -31.93076 -30.87438 -30.41029 -28.14127 -26.72354 -25.93936 -25.29899 -24.49381 -22.35539 -22.16073 -21.00138 -20.67751 -19.37699 -18.72092 -17.58895 -16.84185 -16.73915 -16.33018 -16.06786 -15.69826 -15.31351 -14.92156 -14.68820 -14.57420 -13.94456 -13.83715 -13.53450 -13.29349 -12.95157 -12.77097 -12.69731 -12.56706 -12.50208 -12.41964 -12.14617 -11.98991 -11.75421 -11.72314 -11.50476 -11.25080 -11.23029 -10.91875 -10.84799 -10.80453 -10.71889 -10.54805 -10.25714 -10.19525 -9.92554 -9.76293 -9.51341 -9.17436 -8.88190 -8.48691 -7.70156 -7.03224 -6.63046 -4.60192 2.14555 2.65473 3.03810 3.13781 3.27612 3.67660 3.77983 3.85767 3.92644 3.98411 4.36052 4.52471 4.56753 4.62937 4.93235 4.94263 4.98415 5.10130 5.18590 5.22633 5.35738 5.38069 5.41250 5.57964 5.60803 5.62923 5.71360 5.73899 5.76293 5.79821 5.83650 5.87577 5.90000 5.99097 6.02123 6.06813 6.13709 6.27454 6.32625 6.52441 6.59250 6.73238 6.82372 6.94506 7.00255 7.28779 7.29838 7.50436 7.61881 7.79695 8.17758 8.25595 8.36974 8.63013 8.77327 9.12769 9.94785 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003654 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.168345 B = 7660.372357 C = 9405.162617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.503 3.497 4 O -0.515 6.515 5 C -0.279 4.279 6 C 0.020 3.980 7 C -0.317 4.317 8 C 0.274 3.726 9 N -0.748 5.748 10 C 0.125 3.875 11 H 0.085 0.915 12 C -0.130 4.130 13 C -0.117 4.117 14 H 0.092 0.908 15 C -0.150 4.150 16 C 0.024 3.976 17 N -0.488 5.488 18 C 0.012 3.988 19 C 0.056 3.944 20 H 0.089 0.911 21 C -0.157 4.157 22 C -0.318 4.318 23 C 0.156 3.844 24 C -0.393 4.393 25 H 0.118 0.882 26 C 0.080 3.920 27 N -0.785 5.785 28 Si 0.922 3.078 29 H -0.270 1.270 30 H -0.292 1.292 31 H -0.244 1.244 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.391 0.609 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.107 0.893 50 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.583 -12.083 1.664 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.353 3.647 4 O -0.405 6.405 5 C -0.283 4.283 6 C 0.001 3.999 7 C -0.339 4.339 8 C 0.172 3.828 9 N -0.378 5.378 10 C 0.018 3.982 11 H 0.103 0.897 12 C -0.168 4.168 13 C -0.137 4.137 14 H 0.110 0.890 15 C -0.189 4.189 16 C -0.104 4.104 17 N -0.210 5.210 18 C -0.118 4.118 19 C -0.053 4.053 20 H 0.107 0.893 21 C -0.214 4.214 22 C -0.342 4.342 23 C 0.151 3.849 24 C -0.419 4.419 25 H 0.135 0.865 26 C -0.142 4.142 27 N -0.408 5.408 28 Si 0.748 3.252 29 H -0.196 1.196 30 H -0.220 1.220 31 H -0.167 1.167 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.225 0.775 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.125 0.875 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.281 -12.021 1.107 17.948 hybrid contribution 0.503 1.024 1.310 1.737 sum 13.784 -10.998 2.416 17.799 Atomic orbital electron populations 1.22958 0.78681 1.01920 1.01796 1.86579 1.21475 1.35177 1.86292 1.21227 0.89522 0.80263 0.73660 1.90789 1.66798 1.35120 1.47809 1.19507 0.86841 0.94490 1.27437 1.20697 0.92908 0.96132 0.90164 1.19767 0.93932 0.94700 1.25456 1.17578 0.81642 0.94060 0.89525 1.44583 1.03427 1.07209 1.82587 1.21564 0.91555 0.88055 0.97070 0.89680 1.22204 0.95153 0.97790 1.01658 1.23059 0.98361 0.94933 0.97389 0.88961 1.23005 0.99045 0.97968 0.98881 1.23120 1.00180 0.98544 0.88589 1.66503 1.01783 1.15594 1.37098 1.23245 0.98613 0.92578 0.97370 1.23078 0.92484 0.97259 0.92462 0.89275 1.22080 1.01386 0.97647 1.00271 1.20398 0.93638 0.95328 1.24804 1.18132 0.90120 0.91047 0.85639 1.20085 1.06381 0.89366 1.26078 0.86465 1.26424 0.96867 0.94446 0.96414 1.69588 1.37209 0.99267 1.34730 0.86184 0.79920 0.79009 0.80038 1.19626 1.22007 1.16692 0.89509 0.92816 0.92789 0.87470 0.88465 0.77537 0.90696 0.91341 0.90883 0.91371 0.90579 0.90302 0.89676 0.89809 0.91087 0.92176 0.91814 0.87529 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.57 101.05 1.07 1.72 16 2 O -0.38 -7.67 9.85 -40.89 -0.40 -8.07 16 3 C 0.50 12.16 7.85 34.28 0.27 12.43 16 4 O -0.51 -13.87 13.56 -19.31 -0.26 -14.13 16 5 C -0.28 -6.77 6.07 -102.50 -0.62 -7.39 16 6 C 0.02 0.42 9.60 -39.24 -0.38 0.05 16 7 C -0.32 -6.17 8.78 -39.31 -0.34 -6.51 16 8 C 0.27 5.47 6.61 -84.03 -0.56 4.92 16 9 N -0.75 -11.88 5.21 -52.23 -0.27 -12.15 16 10 C 0.12 1.60 1.75 -67.86 -0.12 1.49 16 11 H 0.09 1.18 3.61 -51.93 -0.19 0.99 16 12 C -0.13 -1.37 4.69 -26.12 -0.12 -1.49 16 13 C -0.12 -1.05 4.10 -87.82 -0.36 -1.41 16 14 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.15 -1.37 5.90 -25.12 -0.15 -1.52 16 16 C 0.02 0.25 6.20 -2.53 -0.02 0.23 16 17 N -0.49 -5.49 6.00 -221.19 -1.33 -6.82 16 18 C 0.01 0.15 5.03 -3.40 -0.02 0.13 16 19 C 0.06 0.52 3.65 -65.44 -0.24 0.28 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.16 -1.38 8.02 37.16 0.30 -1.09 16 22 C -0.32 -7.31 7.01 -38.65 -0.27 -7.58 16 23 C 0.16 4.00 5.22 -104.68 -0.55 3.45 16 24 C -0.39 -10.93 8.37 -37.80 -0.32 -11.24 16 25 H 0.12 3.60 6.18 -52.49 -0.32 3.28 16 26 C 0.08 2.11 5.45 -17.30 -0.09 2.02 16 27 N -0.79 -20.90 13.92 55.56 0.77 -20.13 16 28 Si 0.92 20.70 24.54 -169.99 -4.17 16.53 16 29 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 30 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 31 H -0.24 -5.69 6.96 56.52 0.39 -5.29 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 2.00 7.63 -52.49 -0.40 1.60 16 36 H 0.10 1.66 5.71 -52.48 -0.30 1.36 16 37 H 0.39 5.84 8.59 -40.82 -0.35 5.49 16 38 H 0.07 0.74 5.84 -51.93 -0.30 0.44 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.85 6.79 -51.93 -0.35 0.50 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 45 H 0.08 1.06 5.62 -51.92 -0.29 0.77 16 46 H 0.07 0.69 4.04 -51.93 -0.21 0.48 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 49 H 0.11 2.43 4.75 -52.49 -0.25 2.18 16 50 H 0.29 6.87 8.29 -40.82 -0.34 6.54 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -29.63 371.54 -9.70 -39.33 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.12 Total: 11.35 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.51 Total: -11.50 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.83 Total: -39.10 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.66 Total: -22.20 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.17 Total: 16.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.63 -9.70 -39.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170977452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.080 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds