Wall clock time and date at job start Wed Apr 1 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34847 * 116.99694 * 2 1 4 4 O 1.21561 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.47008 * 119.99648 * 179.97438 * 3 2 1 6 6 C 1.39574 * 120.48761 * 354.34318 * 5 3 2 7 7 C 1.37802 * 120.13569 * 180.02562 * 6 5 3 8 8 C 1.39407 * 121.20346 * 359.97438 * 7 6 5 9 9 N 1.39156 * 119.50425 * 179.97438 * 8 7 6 10 10 C 1.46501 * 119.99458 * 359.97438 * 9 8 7 11 11 H 1.08994 * 109.36860 * 325.26006 * 10 9 8 12 12 C 1.53151 * 109.36449 * 205.63472 * 10 9 8 13 13 C 1.54020 * 108.50826 * 185.81945 * 12 10 9 14 14 H 1.09001 * 113.71749 * 188.32321 * 13 12 10 15 15 C 1.54994 * 107.04975 * 314.10981 * 13 12 10 16 16 C 1.54060 * 104.76001 * 87.41584 * 15 13 12 17 17 N 1.48241 * 106.70241 * 358.99549 * 16 15 13 18 18 C 1.47682 * 108.91296 * 271.82253 * 17 16 15 19 19 C 1.48805 * 105.17447 * 27.47552 * 17 16 15 20 20 H 1.08992 * 110.93481 * 75.44284 * 19 17 16 21 21 C 1.52998 * 110.93308 * 199.11350 * 19 17 16 22 22 C 1.38443 * 120.99874 * 359.70783 * 8 7 6 23 23 C 1.40500 * 119.76428 * 0.58639 * 22 8 7 24 24 C 1.40942 * 120.56389 * 179.70115 * 23 22 8 25 25 H 1.08000 * 120.00009 * 146.75219 * 24 23 22 26 26 C 1.40256 * 120.00225 * 326.74522 * 24 23 22 27 27 N 1.30637 * 119.99996 * 166.50327 * 26 24 23 28 28 Si 1.86800 * 119.99672 * 346.23363 * 26 24 23 29 29 H 1.48497 * 109.47147 * 89.85247 * 28 26 24 30 30 H 1.48495 * 109.46908 * 209.85185 * 28 26 24 31 31 H 1.48498 * 109.47194 * 329.85181 * 28 26 24 32 32 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47505 * 299.99991 * 1 2 3 34 34 H 1.09004 * 109.47244 * 59.99865 * 1 2 3 35 35 H 1.07993 * 119.92888 * 0.02859 * 6 5 3 36 36 H 1.08005 * 119.39510 * 180.02562 * 7 6 5 37 37 H 0.96995 * 120.00326 * 179.97438 * 9 8 7 38 38 H 1.09007 * 109.63034 * 305.52237 * 12 10 9 39 39 H 1.08994 * 109.63343 * 66.11211 * 12 10 9 40 40 H 1.08999 * 110.38042 * 328.60045 * 15 13 12 41 41 H 1.08990 * 110.37973 * 206.23542 * 15 13 12 42 42 H 1.08999 * 110.01610 * 239.68428 * 16 15 13 43 43 H 1.09003 * 110.01218 * 118.30076 * 16 15 13 44 44 H 1.08992 * 109.50171 * 287.13682 * 18 17 16 45 45 H 1.09009 * 109.53207 * 167.03887 * 18 17 16 46 46 H 1.08993 * 109.47741 * 59.43939 * 21 19 17 47 47 H 1.09003 * 109.47372 * 179.44350 * 21 19 17 48 48 H 1.09007 * 109.46776 * 299.43934 * 21 19 17 49 49 H 1.07998 * 120.11434 * 180.31505 * 22 8 7 50 50 H 0.96999 * 119.99786 * 179.72880 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4020 2.2210 0.0005 5 6 3.5322 1.2785 0.0006 6 6 4.3019 0.1203 0.1197 7 6 5.6776 0.2008 0.1199 8 6 6.3292 1.4276 0.0020 9 7 7.7202 1.4680 0.0068 10 6 8.4885 0.2272 0.1358 11 1 7.9549 -0.4620 0.7902 12 6 9.8599 0.5398 0.7415 13 6 10.7035 -0.7488 0.7326 14 1 11.6448 -0.6603 1.2750 15 6 9.7976 -1.8887 1.2639 16 6 9.0647 -2.4207 0.0176 17 7 9.5238 -1.6009 -1.1290 18 6 8.6566 -0.4111 -1.2444 19 6 10.8900 -1.1426 -0.7579 20 1 11.6132 -1.9516 -0.8593 21 6 11.3065 0.0684 -1.5950 22 6 5.6135 2.6058 -0.1254 23 6 4.2089 2.5722 -0.1242 24 6 3.4635 3.7621 -0.2466 25 1 2.5149 3.7544 -0.7627 26 6 3.9536 4.9563 0.3021 27 7 3.4113 6.0979 -0.0283 28 14 5.3769 4.9135 1.5112 29 1 6.6595 5.0148 0.7697 30 1 5.2591 6.0541 2.4548 31 1 5.3434 3.6376 2.2703 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 3.8184 -0.8410 0.2118 36 1 6.2615 -0.7030 0.2123 37 1 8.1810 2.3175 -0.0752 38 1 10.3566 1.3068 0.1471 39 1 9.7365 0.8896 1.7664 40 1 9.0818 -1.4987 1.9875 41 1 10.4025 -2.6760 1.7134 42 1 7.9873 -2.3143 0.1445 43 1 9.3198 -3.4677 -0.1466 44 1 7.6811 -0.7078 -1.6294 45 1 9.1131 0.3079 -1.9248 46 1 10.5996 0.8822 -1.4338 47 1 12.3046 0.3899 -1.2975 48 1 11.3122 -0.2042 -2.6505 49 1 6.1331 3.5477 -0.2210 50 1 3.7476 6.9234 0.3542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170977452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:22 Heat of formation + Delta-G solvation = -59.402027 kcal Electronic energy + Delta-G solvation = -31233.329476 eV Core-core repulsion = 27224.644220 eV Total energy + Delta-G solvation = -4008.685256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.32423 -40.99556 -39.48389 -37.20280 -36.40034 -35.34542 -33.08419 -32.66628 -32.42867 -31.96742 -29.59940 -28.13244 -27.27612 -26.57273 -25.35684 -23.85907 -23.59882 -22.55057 -21.46661 -21.07371 -19.60935 -19.37984 -18.56141 -17.99218 -17.54132 -17.33583 -17.19555 -16.98107 -16.47920 -15.83923 -15.51639 -15.38224 -15.24728 -14.79503 -14.56268 -14.29181 -14.24593 -14.12299 -13.94485 -13.57890 -13.52058 -13.50166 -13.20223 -12.98338 -12.86536 -12.83321 -12.69606 -12.61253 -12.48823 -12.11747 -12.03081 -11.67212 -11.63323 -11.55805 -11.52247 -11.30545 -11.14328 -11.12936 -10.87842 -10.72648 -9.54491 -9.44067 -8.94565 -8.18727 -6.59530 0.34525 0.87108 1.21485 1.36753 1.47217 2.03987 2.09733 2.16923 2.48183 2.65759 3.10901 3.49766 3.54720 3.78210 3.85356 4.01418 4.07172 4.13131 4.22369 4.36294 4.38205 4.40330 4.41012 4.43510 4.49569 4.52290 4.53935 4.62885 4.73083 4.76569 4.80615 4.84687 4.88690 4.98109 5.01428 5.05077 5.10135 5.19817 5.21749 5.24975 5.27597 5.30992 5.41207 5.56499 5.57383 5.76695 5.84714 5.93396 5.96800 6.04865 6.32483 6.53506 6.70972 6.74976 6.94074 7.30252 8.10801 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003654 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.168345 B = 7660.372357 C = 9405.162617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.500 3.500 4 O -0.556 6.556 5 C -0.312 4.312 6 C 0.025 3.975 7 C -0.299 4.299 8 C 0.288 3.712 9 N -0.736 5.736 10 C 0.124 3.876 11 H 0.081 0.919 12 C -0.127 4.127 13 C -0.108 4.108 14 H 0.114 0.886 15 C -0.148 4.148 16 C 0.021 3.979 17 N -0.498 5.498 18 C 0.019 3.981 19 C 0.055 3.945 20 H 0.101 0.899 21 C -0.155 4.155 22 C -0.334 4.334 23 C 0.148 3.852 24 C -0.439 4.439 25 H 0.068 0.932 26 C 0.043 3.957 27 N -0.833 5.833 28 Si 0.979 3.021 29 H -0.243 1.243 30 H -0.281 1.281 31 H -0.258 1.258 32 H 0.137 0.863 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.108 0.892 50 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.481 -15.063 2.873 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.290 6.290 3 C 0.352 3.648 4 O -0.449 6.449 5 C -0.316 4.316 6 C 0.006 3.994 7 C -0.321 4.321 8 C 0.182 3.818 9 N -0.364 5.364 10 C 0.018 3.982 11 H 0.099 0.901 12 C -0.164 4.164 13 C -0.129 4.129 14 H 0.132 0.868 15 C -0.186 4.186 16 C -0.108 4.108 17 N -0.220 5.220 18 C -0.111 4.111 19 C -0.053 4.053 20 H 0.119 0.881 21 C -0.212 4.212 22 C -0.359 4.359 23 C 0.143 3.857 24 C -0.467 4.467 25 H 0.086 0.914 26 C -0.174 4.174 27 N -0.458 5.458 28 Si 0.801 3.199 29 H -0.168 1.168 30 H -0.208 1.208 31 H -0.182 1.182 32 H 0.155 0.845 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.125 0.875 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.227 -15.035 2.299 22.980 hybrid contribution -0.644 1.593 0.870 1.926 sum 16.583 -13.442 3.169 21.581 Atomic orbital electron populations 1.23362 0.76093 1.05070 1.01503 1.86530 1.23952 1.32873 1.85597 1.21396 0.89887 0.80676 0.72837 1.90780 1.67707 1.36727 1.49714 1.19810 0.87499 0.95270 1.28999 1.20970 0.93390 0.96087 0.88907 1.20160 0.93696 0.95697 1.22521 1.17633 0.83576 0.93209 0.87345 1.44739 1.01965 1.09060 1.80594 1.21764 0.92563 0.86400 0.97465 0.90118 1.22187 0.93712 0.99077 1.01474 1.23071 0.98864 0.93689 0.97236 0.86776 1.22988 0.99020 0.98508 0.98116 1.23175 0.99666 0.99057 0.88861 1.66520 1.02543 1.14882 1.38060 1.23059 0.97928 0.93207 0.96857 1.23180 0.91510 0.97849 0.92797 0.88095 1.22061 1.02142 0.97075 0.99929 1.20403 0.92724 0.96647 1.26077 1.18362 0.91458 0.90962 0.84930 1.19880 1.05642 0.91663 1.29537 0.91373 1.27138 0.99198 0.93597 0.97446 1.69621 1.39405 0.99989 1.36793 0.85334 0.78077 0.78435 0.78014 1.16800 1.20750 1.18157 0.84495 0.93086 0.93299 0.84775 0.85263 0.76666 0.89820 0.91309 0.91600 0.89640 0.91744 0.89287 0.91977 0.89861 0.92018 0.90393 0.92409 0.87466 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.57 113.37 1.20 2.24 16 2 O -0.37 -15.08 9.85 -57.60 -0.57 -15.64 16 3 C 0.50 25.14 7.85 70.12 0.55 25.69 16 4 O -0.56 -32.09 13.56 19.63 0.27 -31.82 16 5 C -0.31 -15.45 6.07 -18.49 -0.11 -15.56 16 6 C 0.03 1.03 9.60 22.49 0.22 1.24 16 7 C -0.30 -10.87 8.78 22.45 0.20 -10.67 16 8 C 0.29 10.93 6.61 38.31 0.25 11.19 16 9 N -0.74 -21.23 5.21 -319.15 -1.66 -22.90 16 10 C 0.12 2.78 1.75 45.04 0.08 2.86 16 11 H 0.08 1.93 3.61 -2.39 -0.01 1.93 16 12 C -0.13 -2.15 4.69 30.99 0.15 -2.00 16 13 C -0.11 -1.45 4.10 -8.98 -0.04 -1.49 16 14 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 15 C -0.15 -2.08 5.90 31.63 0.19 -1.89 16 16 C 0.02 0.35 6.20 86.40 0.54 0.89 16 17 N -0.50 -9.65 6.00 -853.71 -5.12 -14.77 16 18 C 0.02 0.44 5.03 86.15 0.43 0.88 16 19 C 0.05 0.81 3.65 45.33 0.17 0.98 16 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.16 -2.20 8.02 71.98 0.58 -1.62 16 22 C -0.33 -15.32 7.01 22.87 0.16 -15.16 16 23 C 0.15 7.85 5.22 -19.90 -0.10 7.75 16 24 C -0.44 -26.28 8.37 23.42 0.20 -26.09 16 25 H 0.07 4.63 6.18 -2.91 -0.02 4.62 16 26 C 0.04 2.37 5.45 85.36 0.47 2.84 16 27 N -0.83 -47.17 13.92 21.88 0.30 -46.86 16 28 Si 0.98 43.37 24.54 68.60 1.68 45.06 16 29 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 30 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 31 H -0.26 -11.84 6.96 99.48 0.69 -11.14 16 32 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.13 4.64 7.63 -2.91 -0.02 4.62 16 36 H 0.13 3.92 5.71 -2.91 -0.02 3.90 16 37 H 0.40 10.67 8.59 -92.71 -0.80 9.88 16 38 H 0.08 1.32 5.84 -2.38 -0.01 1.30 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.05 6.94 -2.39 -0.02 1.03 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.24 6.79 -2.39 -0.02 1.22 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.69 7.58 -2.39 -0.02 1.68 16 45 H 0.08 1.91 5.62 -2.38 -0.01 1.89 16 46 H 0.06 0.99 4.04 -2.39 -0.01 0.98 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.11 4.83 4.75 -2.91 -0.01 4.82 16 50 H 0.30 14.92 8.29 -92.71 -0.77 14.15 16 Total: -1.00 -70.50 371.54 0.13 -70.37 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.12 Total: 34.51 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.11 Total: -17.93 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -6.48 Total: -84.53 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.30 Total: -47.46 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.68 Total: 45.06 kcal Total: -70.50 0.13 -70.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170977452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.965 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds