Wall clock time and date at job start Wed Apr 1 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00131 * 2 1 4 4 C 1.53000 * 109.47363 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47239 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47029 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99618 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46936 * 180.02562 * 7 6 5 9 9 C 1.52998 * 110.38691 * 57.76721 * 8 7 6 10 10 C 1.54788 * 110.52438 * 295.59840 * 8 7 6 11 11 N 1.48148 * 104.41516 * 265.21999 * 10 8 7 12 12 C 1.34780 * 127.83401 * 140.37101 * 11 10 8 13 13 O 1.21280 * 120.00423 * 359.70128 * 12 11 10 14 14 C 1.50701 * 119.99795 * 179.70804 * 12 11 10 15 15 S 1.81002 * 109.47156 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00026 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00056 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47361 * 89.99587 * 20 18 16 22 22 H 1.48497 * 109.47059 * 210.00081 * 20 18 16 23 23 H 1.48507 * 109.47001 * 329.99878 * 20 18 16 24 24 C 1.48138 * 104.32719 * 320.10906 * 11 10 8 25 25 C 1.54280 * 110.34511 * 179.97438 * 8 7 6 26 26 H 1.09004 * 110.34031 * 0.02562 * 25 8 7 27 27 C 1.53002 * 110.34463 * 237.74497 * 25 8 7 28 28 H 1.08999 * 109.46888 * 60.00222 * 1 2 3 29 29 H 1.09005 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47292 * 300.00120 * 1 2 3 31 31 H 1.09007 * 109.47051 * 59.99943 * 3 2 1 32 32 H 1.08997 * 109.47019 * 299.99828 * 3 2 1 33 33 H 1.08998 * 109.46848 * 60.00176 * 4 3 2 34 34 H 1.09005 * 109.47264 * 300.00447 * 4 3 2 35 35 H 1.08998 * 109.46962 * 60.00362 * 5 4 3 36 36 H 1.08997 * 109.47176 * 300.00347 * 5 4 3 37 37 H 1.00896 * 110.99959 * 56.05051 * 6 5 4 38 38 H 1.09003 * 109.47288 * 60.00690 * 7 6 5 39 39 H 1.09004 * 109.47440 * 299.99896 * 7 6 5 40 40 H 1.09001 * 109.47235 * 182.23257 * 9 8 7 41 41 H 1.08999 * 109.47778 * 302.23185 * 9 8 7 42 42 H 1.09006 * 109.47361 * 62.23520 * 9 8 7 43 43 H 1.08998 * 110.54529 * 146.48732 * 10 8 7 44 44 H 1.08996 * 110.46665 * 23.92365 * 10 8 7 45 45 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 46 46 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 47 47 H 0.97010 * 119.99946 * 180.02562 * 19 18 16 48 48 H 1.09000 * 110.41113 * 158.62826 * 24 11 10 49 49 H 1.09007 * 110.40872 * 281.06134 * 24 11 10 50 50 H 1.09000 * 109.46795 * 303.00590 * 27 25 8 51 51 H 1.08991 * 109.47015 * 63.00717 * 27 25 8 52 52 H 1.09004 * 109.47230 * 183.00924 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6222 2.4664 0.0000 7 6 6.2552 3.7919 0.0000 8 6 7.7767 3.6305 -0.0006 9 6 8.2255 2.8139 -1.2141 10 6 8.2509 2.9502 1.3064 11 7 8.6134 4.0765 2.1979 12 6 8.3879 4.1883 3.5220 13 8 7.8199 3.2977 4.1179 14 6 8.8417 5.4201 4.2621 15 16 8.3965 5.2719 6.0103 16 6 9.0256 6.8018 6.6170 17 1 9.5112 7.4915 5.9425 18 6 8.8979 7.1202 7.9620 19 7 8.3065 6.2794 8.7840 20 14 9.5655 8.7418 8.6054 21 1 8.5103 9.7826 8.5142 22 1 9.9796 8.5794 10.0222 23 1 10.7375 9.1526 7.7911 24 6 9.2856 5.0489 1.3052 25 6 8.4628 5.0124 -0.0013 26 1 7.7158 5.8062 -0.0007 27 6 9.3845 5.1481 -1.2149 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8568 0.6438 0.8909 35 1 3.8359 3.1238 0.8895 36 1 3.8365 3.1228 -0.8904 37 1 5.9411 1.9131 -0.7811 38 1 5.9482 4.3412 0.8901 39 1 5.9482 4.3413 -0.8900 40 1 9.3060 2.6744 -1.1787 41 1 7.7331 1.8416 -1.2002 42 1 7.9574 3.3439 -2.1281 43 1 9.1203 2.3209 1.1164 44 1 7.4440 2.3629 1.7447 45 1 9.9230 5.5219 4.1696 46 1 8.3563 6.2988 3.8372 47 1 8.2169 6.5020 9.7240 48 1 9.2603 6.0470 1.7426 49 1 10.3142 4.7423 1.1150 50 1 10.1159 4.3400 -1.2078 51 1 8.7926 5.0943 -2.1285 52 1 9.9018 6.1067 -1.1730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180662726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:33 Heat of formation + Delta-G solvation = -86.481830 kcal Electronic energy + Delta-G solvation = -28138.060102 eV Core-core repulsion = 24263.644530 eV Total energy + Delta-G solvation = -3874.415573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37769 -38.40891 -38.04487 -36.36635 -33.72362 -32.42556 -32.39264 -30.60612 -29.40084 -27.57279 -26.76287 -25.88400 -25.65341 -25.22303 -23.97093 -21.75487 -21.69218 -19.28954 -18.67171 -17.61308 -16.96571 -16.64561 -16.54907 -15.96673 -15.86642 -15.56540 -15.16324 -14.90678 -14.78334 -14.58892 -14.23068 -14.08461 -13.88522 -13.62813 -13.43060 -13.08547 -12.66055 -12.61894 -12.25898 -12.21911 -12.15543 -12.12637 -11.82983 -11.75403 -11.66811 -11.55892 -11.35282 -11.18862 -11.04823 -10.99654 -10.83535 -10.70810 -10.60223 -10.53881 -10.00376 -9.78413 -9.29372 -9.04541 -8.65702 -8.45246 -8.19205 -6.46856 -6.19222 -3.89376 2.98888 3.15675 3.23489 3.27953 3.29351 3.32026 3.67607 3.97531 4.22548 4.36284 4.38579 4.48971 4.65319 4.81056 4.88718 4.93019 4.97987 5.01326 5.04635 5.05502 5.09313 5.13222 5.15687 5.19595 5.21548 5.32011 5.33308 5.39537 5.43321 5.47138 5.54896 5.59400 5.62625 5.72155 5.74424 5.80868 5.84035 5.88288 5.93411 5.95286 6.02037 6.15059 6.17945 6.20270 6.51051 6.72944 6.83293 7.14197 7.61639 7.85174 8.37475 8.67343 9.25828 10.88178 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.002366 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.131654 B =11832.341690 C =14162.867272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.062 3.938 4 C -0.117 4.117 5 C 0.064 3.936 6 N -0.685 5.685 7 C 0.076 3.924 8 C -0.069 4.069 9 C -0.141 4.141 10 C 0.120 3.880 11 N -0.630 5.630 12 C 0.553 3.447 13 O -0.514 6.514 14 C -0.146 4.146 15 S -0.060 6.060 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.105 3.895 25 C -0.099 4.099 26 H 0.080 0.920 27 C -0.143 4.143 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.340 0.660 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.268 0.732 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.058 0.942 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 -6.105 -26.724 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.155 4.155 5 C -0.066 4.066 6 N -0.318 5.318 7 C -0.053 4.053 8 C -0.070 4.070 9 C -0.199 4.199 10 C -0.003 4.003 11 N -0.366 5.366 12 C 0.342 3.658 13 O -0.388 6.388 14 C -0.297 4.297 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.019 4.019 25 C -0.119 4.119 26 H 0.099 0.901 27 C -0.200 4.200 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.159 0.841 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.079 -7.701 -24.813 26.928 hybrid contribution 0.690 2.740 -1.220 3.078 sum -6.389 -4.961 -26.033 27.261 Atomic orbital electron populations 1.22743 0.80968 1.02794 0.99996 1.87874 1.19758 1.28079 1.95431 1.22481 0.94128 0.84652 1.00217 1.21456 0.92544 0.97420 1.04081 1.21802 0.87789 0.96196 1.00793 1.60373 1.05539 1.15679 1.50162 1.21961 0.92713 0.89949 1.00681 1.21592 0.94395 0.95253 0.95808 1.21958 1.01779 0.99567 0.96586 1.22386 1.00493 0.89418 0.88044 1.48972 1.59996 1.20701 1.06961 1.19933 0.78239 0.88262 0.79392 1.90716 1.40918 1.41391 1.65725 1.23502 1.04114 0.97587 1.04482 1.85411 1.77174 1.27042 0.93711 1.22862 1.44171 1.04576 0.96669 0.90991 1.24992 0.95033 0.97859 0.95739 1.70022 1.40418 1.35277 1.04539 0.86173 0.79108 0.82133 0.78113 1.20297 1.20754 1.19710 1.22437 0.95985 0.94162 0.89291 1.22170 0.97833 0.96955 0.94939 0.90116 1.21899 0.99238 1.01944 0.96922 0.94201 0.89594 0.93917 0.92977 0.93555 0.91366 0.89824 0.90565 0.95360 0.84100 0.90509 0.95162 0.91711 0.92228 0.92296 0.91920 0.88388 0.89447 0.89501 0.92205 0.90160 0.91200 0.91936 0.92261 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.97 10.70 -35.23 -0.38 -4.35 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 C -0.12 -1.02 5.84 -26.73 -0.16 -1.17 16 5 C 0.06 0.55 5.69 -3.82 -0.02 0.53 16 6 N -0.69 -6.35 5.82 -113.78 -0.66 -7.02 16 7 C 0.08 0.72 4.45 -3.82 -0.02 0.71 16 8 C -0.07 -0.62 0.82 -152.90 -0.13 -0.75 16 9 C -0.14 -0.94 6.95 37.16 0.26 -0.68 16 10 C 0.12 1.51 6.07 -2.19 -0.01 1.50 16 11 N -0.63 -9.45 3.31 -169.03 -0.56 -10.01 16 12 C 0.55 11.12 7.93 -10.98 -0.09 11.03 16 13 O -0.51 -12.43 16.13 5.56 0.09 -12.34 16 14 C -0.15 -3.10 5.13 36.01 0.18 -2.91 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 20 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.11 1.16 6.46 -2.38 -0.02 1.14 16 25 C -0.10 -0.85 3.31 -89.19 -0.30 -1.15 16 26 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 27 C -0.14 -0.91 7.93 37.16 0.29 -0.62 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.34 2.61 6.73 -39.29 -0.26 2.35 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.42 6.67 -51.93 -0.35 0.07 16 41 H 0.06 0.38 6.51 -51.93 -0.34 0.05 16 42 H 0.06 0.33 6.88 -51.93 -0.36 -0.02 16 43 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 44 H 0.10 1.49 7.14 -51.93 -0.37 1.12 16 45 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 46 H 0.09 1.71 7.95 -51.91 -0.41 1.29 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 49 H 0.07 0.69 7.86 -51.93 -0.41 0.28 16 50 H 0.06 0.38 6.61 -51.93 -0.34 0.04 16 51 H 0.06 0.33 6.98 -51.93 -0.36 -0.03 16 52 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 421.32 15.07 6.35 6.35 Total: -1.00 -35.15 421.32 -9.56 -44.71 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -9.43 Total: -0.90 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 1.54 Total: -3.42 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.49 Total: -42.74 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.29 Total: -16.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.15 -9.56 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180662726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.772 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds