Wall clock time and date at job start Wed Apr 1 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00131 * 2 1 4 4 C 1.53000 * 109.47363 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47239 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47029 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99618 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46936 * 180.02562 * 7 6 5 9 9 C 1.52998 * 110.38691 * 57.76721 * 8 7 6 10 10 C 1.54788 * 110.52438 * 295.59840 * 8 7 6 11 11 N 1.48148 * 104.41516 * 265.21999 * 10 8 7 12 12 C 1.34780 * 127.83401 * 140.37101 * 11 10 8 13 13 O 1.21280 * 120.00423 * 359.70128 * 12 11 10 14 14 C 1.50701 * 119.99795 * 179.70804 * 12 11 10 15 15 S 1.81002 * 109.47156 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00026 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00056 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47361 * 89.99587 * 20 18 16 22 22 H 1.48497 * 109.47059 * 210.00081 * 20 18 16 23 23 H 1.48507 * 109.47001 * 329.99878 * 20 18 16 24 24 C 1.48138 * 104.32719 * 320.10906 * 11 10 8 25 25 C 1.54280 * 110.34511 * 179.97438 * 8 7 6 26 26 H 1.09004 * 110.34031 * 0.02562 * 25 8 7 27 27 C 1.53002 * 110.34463 * 237.74497 * 25 8 7 28 28 H 1.08999 * 109.46888 * 60.00222 * 1 2 3 29 29 H 1.09005 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47292 * 300.00120 * 1 2 3 31 31 H 1.09007 * 109.47051 * 59.99943 * 3 2 1 32 32 H 1.08997 * 109.47019 * 299.99828 * 3 2 1 33 33 H 1.08998 * 109.46848 * 60.00176 * 4 3 2 34 34 H 1.09005 * 109.47264 * 300.00447 * 4 3 2 35 35 H 1.08998 * 109.46962 * 60.00362 * 5 4 3 36 36 H 1.08997 * 109.47176 * 300.00347 * 5 4 3 37 37 H 1.00896 * 110.99959 * 56.05051 * 6 5 4 38 38 H 1.09003 * 109.47288 * 60.00690 * 7 6 5 39 39 H 1.09004 * 109.47440 * 299.99896 * 7 6 5 40 40 H 1.09001 * 109.47235 * 182.23257 * 9 8 7 41 41 H 1.08999 * 109.47778 * 302.23185 * 9 8 7 42 42 H 1.09006 * 109.47361 * 62.23520 * 9 8 7 43 43 H 1.08998 * 110.54529 * 146.48732 * 10 8 7 44 44 H 1.08996 * 110.46665 * 23.92365 * 10 8 7 45 45 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 46 46 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 47 47 H 0.97010 * 119.99946 * 180.02562 * 19 18 16 48 48 H 1.09000 * 110.41113 * 158.62826 * 24 11 10 49 49 H 1.09007 * 110.40872 * 281.06134 * 24 11 10 50 50 H 1.09000 * 109.46795 * 303.00590 * 27 25 8 51 51 H 1.08991 * 109.47015 * 63.00717 * 27 25 8 52 52 H 1.09004 * 109.47230 * 183.00924 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6222 2.4664 0.0000 7 6 6.2552 3.7919 0.0000 8 6 7.7767 3.6305 -0.0006 9 6 8.2255 2.8139 -1.2141 10 6 8.2509 2.9502 1.3064 11 7 8.6134 4.0765 2.1979 12 6 8.3879 4.1883 3.5220 13 8 7.8199 3.2977 4.1179 14 6 8.8417 5.4201 4.2621 15 16 8.3965 5.2719 6.0103 16 6 9.0256 6.8018 6.6170 17 1 9.5112 7.4915 5.9425 18 6 8.8979 7.1202 7.9620 19 7 8.3065 6.2794 8.7840 20 14 9.5655 8.7418 8.6054 21 1 8.5103 9.7826 8.5142 22 1 9.9796 8.5794 10.0222 23 1 10.7375 9.1526 7.7911 24 6 9.2856 5.0489 1.3052 25 6 8.4628 5.0124 -0.0013 26 1 7.7158 5.8062 -0.0007 27 6 9.3845 5.1481 -1.2149 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8568 0.6438 0.8909 35 1 3.8359 3.1238 0.8895 36 1 3.8365 3.1228 -0.8904 37 1 5.9411 1.9131 -0.7811 38 1 5.9482 4.3412 0.8901 39 1 5.9482 4.3413 -0.8900 40 1 9.3060 2.6744 -1.1787 41 1 7.7331 1.8416 -1.2002 42 1 7.9574 3.3439 -2.1281 43 1 9.1203 2.3209 1.1164 44 1 7.4440 2.3629 1.7447 45 1 9.9230 5.5219 4.1696 46 1 8.3563 6.2988 3.8372 47 1 8.2169 6.5020 9.7240 48 1 9.2603 6.0470 1.7426 49 1 10.3142 4.7423 1.1150 50 1 10.1159 4.3400 -1.2078 51 1 8.7926 5.0943 -2.1285 52 1 9.9018 6.1067 -1.1730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180662726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:32 Heat of formation + Delta-G solvation = -110.963441 kcal Electronic energy + Delta-G solvation = -28139.121705 eV Core-core repulsion = 24263.644530 eV Total energy + Delta-G solvation = -3875.477175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41596 -39.51684 -38.99302 -37.20545 -34.79128 -34.59703 -33.16115 -31.57102 -30.75944 -28.23479 -27.80067 -27.42910 -26.64077 -26.37851 -24.75814 -22.52684 -22.45459 -20.76570 -19.71431 -19.28208 -18.08990 -17.59387 -17.30204 -17.01748 -16.89906 -16.71250 -16.58135 -16.24620 -15.98952 -15.68026 -15.29391 -15.18748 -14.80939 -14.61756 -14.46392 -14.24282 -14.10290 -13.54422 -13.31549 -13.22992 -13.11073 -12.96426 -12.89967 -12.81090 -12.72095 -12.61726 -12.54848 -12.42405 -12.21889 -12.02194 -11.90586 -11.77753 -11.50032 -11.32489 -11.23938 -11.15550 -10.92176 -10.66170 -10.29530 -9.73326 -9.35340 -8.69771 -8.35697 -6.14823 1.23017 1.41817 1.44070 1.55516 1.58578 2.11063 2.26213 2.64736 2.98139 3.21429 3.30173 3.54082 3.59821 3.76818 3.90691 3.95973 4.16418 4.18676 4.19615 4.23928 4.32072 4.33124 4.41375 4.41767 4.48480 4.51319 4.52877 4.57735 4.63870 4.70620 4.71890 4.72444 4.80912 4.82760 4.90741 4.94411 5.03645 5.10124 5.12955 5.18300 5.29109 5.33374 5.34833 5.39953 5.41334 5.66928 6.00830 6.18432 6.20177 6.49048 6.51948 7.04883 7.14821 8.73706 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.002366 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.131654 B =11832.341690 C =14162.867272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.062 3.938 4 C -0.110 4.110 5 C 0.069 3.931 6 N -0.699 5.699 7 C 0.080 3.920 8 C -0.058 4.058 9 C -0.136 4.136 10 C 0.115 3.885 11 N -0.622 5.622 12 C 0.549 3.451 13 O -0.569 6.569 14 C -0.118 4.118 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 1.001 2.999 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.257 1.257 24 C 0.095 3.905 25 C -0.091 4.091 26 H 0.080 0.920 27 C -0.137 4.137 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.351 0.649 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.271 0.729 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.069 0.931 51 H 0.074 0.926 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -4.366 -30.141 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.015 4.015 4 C -0.148 4.148 5 C -0.060 4.060 6 N -0.333 5.333 7 C -0.049 4.049 8 C -0.060 4.060 9 C -0.194 4.194 10 C -0.007 4.007 11 N -0.356 5.356 12 C 0.338 3.662 13 O -0.448 6.448 14 C -0.269 4.269 15 S 0.076 5.924 16 C -0.693 4.693 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.027 4.027 25 C -0.111 4.111 26 H 0.099 0.901 27 C -0.194 4.194 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.172 0.828 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.109 0.891 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.867 -5.955 -28.312 29.520 hybrid contribution 0.296 2.125 -0.279 2.164 sum -5.571 -3.830 -28.590 29.379 Atomic orbital electron populations 1.22923 0.79499 1.03831 1.00832 1.87830 1.21522 1.28944 1.95613 1.22521 0.93752 0.84372 1.00888 1.21369 0.92985 0.97208 1.03219 1.21719 0.87560 0.96065 1.00689 1.60300 1.05931 1.15946 1.51142 1.21867 0.93116 0.89938 0.99951 1.21548 0.93977 0.95654 0.94778 1.21946 1.02320 0.99345 0.95753 1.22594 1.00123 0.88975 0.89021 1.48919 1.58578 1.22393 1.05734 1.19709 0.78187 0.87292 0.81038 1.90690 1.43707 1.42915 1.67455 1.23284 1.05108 0.98997 0.99512 1.85620 1.78271 1.28404 1.00130 1.23184 1.44307 1.04444 0.97402 0.89928 1.26172 0.95021 1.02198 0.95880 1.70193 1.41814 1.37777 1.05001 0.84923 0.78841 0.76547 0.77468 1.19204 1.20221 1.18095 1.22835 0.97146 0.93188 0.89544 1.22155 0.97887 0.96423 0.94632 0.90132 1.21880 0.98984 1.02606 0.95953 0.92746 0.88572 0.93668 0.93411 0.91705 0.90453 0.92348 0.92574 0.93399 0.82782 0.93907 0.93050 0.90832 0.92079 0.90237 0.90561 0.91550 0.87729 0.87834 0.91955 0.90091 0.89149 0.91224 0.90730 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.42 10.70 -148.98 -1.59 -10.02 16 3 C 0.06 1.03 5.94 71.98 0.43 1.46 16 4 C -0.11 -1.92 5.84 30.59 0.18 -1.74 16 5 C 0.07 1.18 5.69 86.30 0.49 1.67 16 6 N -0.70 -12.65 5.82 -513.88 -2.99 -15.64 16 7 C 0.08 1.44 4.45 86.31 0.38 1.83 16 8 C -0.06 -0.93 0.82 -51.14 -0.04 -0.97 16 9 C -0.14 -1.33 6.95 71.98 0.50 -0.83 16 10 C 0.12 2.86 6.07 86.67 0.53 3.38 16 11 N -0.62 -18.52 3.31 -807.07 -2.67 -21.20 16 12 C 0.55 22.77 7.93 87.66 0.70 23.47 16 13 O -0.57 -29.20 16.13 -3.03 -0.05 -29.25 16 14 C -0.12 -5.05 5.13 71.24 0.37 -4.69 16 15 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 16 C -0.55 -31.90 9.50 67.96 0.65 -31.25 16 17 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.91 -57.05 13.22 21.65 0.29 -56.77 16 20 Si 1.00 44.17 29.55 68.60 2.03 46.19 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 C 0.09 1.89 6.46 86.56 0.56 2.45 16 25 C -0.09 -1.30 3.31 -9.87 -0.03 -1.34 16 26 H 0.08 1.20 7.71 -2.38 -0.02 1.18 16 27 C -0.14 -1.15 7.93 71.98 0.57 -0.58 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.35 4.85 6.73 -89.70 -0.60 4.25 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.64 6.67 -2.39 -0.02 0.62 16 41 H 0.06 0.61 6.51 -2.39 -0.02 0.59 16 42 H 0.08 0.51 6.88 -2.38 -0.02 0.50 16 43 H 0.08 1.70 7.84 -2.39 -0.02 1.68 16 44 H 0.07 2.11 7.14 -2.39 -0.02 2.09 16 45 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 46 H 0.10 4.05 7.95 -2.40 -0.02 4.03 16 47 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 48 H 0.08 1.62 7.30 -2.39 -0.02 1.60 16 49 H 0.09 1.49 7.86 -2.38 -0.02 1.47 16 50 H 0.07 0.53 6.61 -2.39 -0.02 0.51 16 51 H 0.07 0.46 6.98 -2.39 -0.02 0.44 16 52 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -81.20 421.32 1.11 -80.09 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.28 Total: 20.94 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.98 Total: -4.41 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -5.38 Total: -93.60 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.64 Total: -39.27 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -81.20 1.11 -80.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180662726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.878 kcal (2) G-P(sol) polarization free energy of solvation -81.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds