Wall clock time and date at job start Wed Apr 1 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.84272 * 140.39406 * 5 4 2 7 7 O 1.21277 * 120.00383 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99546 * 0.02562 * 6 5 4 9 9 H 1.09001 * 110.66872 * 301.78198 * 8 6 5 10 10 C 1.54701 * 110.75239 * 65.00125 * 8 6 5 11 11 C 1.51644 * 101.92834 * 143.60166 * 10 8 6 12 12 C 1.37740 * 132.17441 * 164.59171 * 11 10 8 13 13 C 1.38344 * 119.98081 * 180.36610 * 12 11 10 14 14 C 1.38281 * 119.76800 * 0.02562 * 13 12 11 15 15 C 1.37934 * 120.35011 * 359.80510 * 14 13 12 16 16 C 1.38885 * 107.04113 * 344.62039 * 11 10 8 17 17 O 1.36133 * 111.23453 * 358.92498 * 16 11 10 18 18 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 19 19 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 20 20 C 1.53002 * 110.34364 * 0.10624 * 19 2 1 21 21 C 1.53001 * 110.34653 * 237.84827 * 19 2 1 22 22 N 1.46498 * 109.47410 * 183.01191 * 21 19 2 23 23 C 1.36933 * 120.00279 * 180.02562 * 22 21 19 24 24 H 1.08005 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00277 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00240 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 119.99965 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47230 * 90.00323 * 27 25 23 29 29 H 1.48506 * 109.47288 * 210.00364 * 27 25 23 30 30 H 1.48502 * 109.47544 * 330.00554 * 27 25 23 31 31 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 32 32 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 33 33 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 34 34 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 35 35 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 36 36 H 1.08994 * 110.94408 * 261.76674 * 10 8 6 37 37 H 1.09002 * 110.93863 * 25.41043 * 10 8 6 38 38 H 1.08001 * 120.00488 * 0.39032 * 12 11 10 39 39 H 1.07997 * 120.11814 * 180.02562 * 13 12 11 40 40 H 1.08001 * 119.82897 * 179.83391 * 14 13 12 41 41 H 1.08004 * 119.88043 * 180.02562 * 15 14 13 42 42 H 1.08992 * 110.40889 * 280.80306 * 18 5 4 43 43 H 1.09000 * 110.40506 * 158.36626 * 18 5 4 44 44 H 1.09004 * 109.47342 * 176.98652 * 20 19 2 45 45 H 1.09000 * 109.46937 * 296.99283 * 20 19 2 46 46 H 1.09001 * 109.46721 * 56.98802 * 20 19 2 47 47 H 1.09006 * 109.46640 * 303.00792 * 21 19 2 48 48 H 1.09001 * 109.47083 * 63.00447 * 21 19 2 49 49 H 0.97003 * 119.99626 * 359.97438 * 22 21 19 50 50 H 0.97002 * 120.00721 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0831 -3.3101 -1.3530 7 8 2.3425 -4.3597 -0.8036 8 6 1.4985 -3.3109 -2.7420 9 1 0.5381 -2.7955 -2.7555 10 6 2.4799 -2.6677 -3.7502 11 6 2.2573 -3.5147 -4.9882 12 6 2.5952 -3.3269 -6.3102 13 6 2.2545 -4.2803 -7.2530 14 6 1.5745 -5.4194 -6.8628 15 6 1.2383 -5.6112 -5.5389 16 6 1.5810 -4.6581 -4.5829 17 8 1.3670 -4.6539 -3.2385 18 6 2.8825 -1.9400 0.6331 19 6 2.0664 -0.7703 1.2243 20 6 0.9063 -1.3038 2.0672 21 6 2.9671 0.1334 2.0687 22 7 3.5226 -0.6360 3.1847 23 6 4.3633 -0.0324 4.0813 24 1 4.6172 1.0110 3.9654 25 6 4.8892 -0.7613 5.1390 26 7 5.6969 -0.1809 6.0011 27 14 4.4495 -2.5656 5.3399 28 1 5.4318 -3.3996 4.6017 29 1 4.4788 -2.9249 6.7805 30 1 3.0885 -2.8069 4.7971 31 1 -0.3633 0.4797 0.9089 32 1 -0.3634 0.5473 -0.8698 33 1 -0.3634 -1.0269 -0.0391 34 1 1.3253 -0.7878 -2.0206 35 1 2.9957 -0.3211 -1.5793 36 1 2.2183 -1.6265 -3.9383 37 1 3.5087 -2.7515 -3.3999 38 1 3.1262 -2.4357 -6.6106 39 1 2.5187 -4.1354 -8.2901 40 1 1.3057 -6.1630 -7.5984 41 1 0.7075 -6.5039 -5.2425 42 1 3.9374 -1.6733 0.5690 43 1 2.7526 -2.8378 1.2374 44 1 1.2999 -1.8900 2.8976 45 1 0.3251 -0.4676 2.4560 46 1 0.2673 -1.9338 1.4484 47 1 3.7798 0.5157 1.4508 48 1 2.3830 0.9675 2.4574 49 1 3.2943 -1.5730 3.2889 50 1 6.0641 -0.6901 6.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182055781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:56 Heat of formation + Delta-G solvation = -13.291841 kcal Electronic energy + Delta-G solvation = -30671.330763 eV Core-core repulsion = 26664.644996 eV Total energy + Delta-G solvation = -4006.685768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74731 -40.33125 -38.51116 -37.43751 -35.10219 -33.56626 -32.87722 -31.68633 -30.43119 -30.38752 -29.78146 -27.60021 -26.11358 -25.72548 -24.36894 -22.99849 -22.59407 -22.02267 -21.14295 -19.71544 -18.82787 -18.12219 -17.74106 -17.27849 -16.81641 -16.49338 -15.88331 -15.76283 -14.69202 -14.57794 -14.46243 -14.36790 -14.09991 -14.07631 -13.73023 -13.69951 -13.54271 -13.32561 -13.26044 -12.86295 -12.58661 -12.49567 -12.36534 -12.13932 -12.09217 -11.77392 -11.56210 -11.52166 -11.45198 -11.32249 -11.17698 -10.86719 -10.52490 -10.47243 -10.27921 -10.04649 -9.90557 -9.57835 -9.28363 -8.92179 -8.81322 -8.51492 -7.25032 -5.77987 -3.13727 0.89293 1.00461 2.25212 2.37480 3.13731 3.36472 3.38580 3.42156 3.47363 3.86826 4.01168 4.27404 4.39549 4.48063 4.53114 4.58963 4.61063 4.69434 4.73907 4.83778 5.00452 5.08173 5.15313 5.21689 5.24464 5.27049 5.31428 5.32915 5.42616 5.53401 5.60792 5.63100 5.68097 5.73229 5.82132 5.86863 5.92980 5.93950 6.01463 6.03437 6.07501 6.09895 6.21138 6.24634 6.40230 6.48346 6.59611 6.66428 6.80211 7.36195 7.94765 7.97243 8.40813 9.19527 9.92140 10.11142 11.40255 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.002515 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.693043 B =11129.591094 C =11710.036074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.093 0.907 4 C 0.100 3.900 5 N -0.615 5.615 6 C 0.537 3.463 7 O -0.516 6.516 8 C 0.070 3.930 9 H 0.112 0.888 10 C -0.097 4.097 11 C -0.175 4.175 12 C -0.067 4.067 13 C -0.150 4.150 14 C -0.084 4.084 15 C -0.136 4.136 16 C 0.107 3.893 17 O -0.274 6.274 18 C 0.118 3.882 19 C -0.079 4.079 20 C -0.135 4.135 21 C 0.173 3.827 22 N -0.755 5.755 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.880 3.120 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 -2.638 -28.222 30.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.023 4.023 5 N -0.350 5.350 6 C 0.323 3.677 7 O -0.390 6.390 8 C 0.010 3.990 9 H 0.130 0.870 10 C -0.134 4.134 11 C -0.175 4.175 12 C -0.085 4.085 13 C -0.168 4.168 14 C -0.102 4.102 15 C -0.155 4.155 16 C 0.062 3.938 17 O -0.187 6.187 18 C -0.004 4.004 19 C -0.081 4.081 20 C -0.192 4.192 21 C 0.046 3.954 22 N -0.401 5.401 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.710 3.290 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.195 0.805 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.159 -3.341 -27.690 30.426 hybrid contribution -0.150 -1.114 0.337 1.173 sum -12.308 -4.454 -27.352 30.323 Atomic orbital electron populations 1.21933 0.94390 1.01861 1.01927 1.22128 0.96352 0.99719 0.93378 0.88874 1.22634 1.00850 0.81702 0.97084 1.48853 1.63049 1.04922 1.18220 1.19478 0.79065 0.82880 0.86265 1.90783 1.51240 1.30320 1.66702 1.23095 1.00319 0.82672 0.92874 0.87025 1.21758 1.00781 1.00080 0.90827 1.20718 1.03688 0.97873 0.95258 1.20315 0.98303 0.99288 0.90608 1.21050 1.01507 0.94662 0.99602 1.20901 0.97120 0.97533 0.94660 1.20292 1.04339 0.99825 0.91045 1.19655 0.95036 0.95572 0.83569 1.86964 1.86713 1.27304 1.17681 1.22572 0.97664 0.98910 0.81247 1.21779 0.96274 0.95190 0.94825 1.21902 0.97023 1.00968 0.99273 1.20694 0.93571 0.92671 0.88500 1.42743 1.57352 1.09903 1.30070 1.19020 1.18813 0.96557 1.03009 0.89194 1.24651 0.99334 0.97508 0.97467 1.69693 1.35938 1.35757 1.16716 0.86628 0.78261 0.86876 0.77216 1.20948 1.21672 1.20315 0.91619 0.92951 0.92492 0.90493 0.90292 0.87984 0.88480 0.85565 0.85352 0.85030 0.85236 0.89785 0.89907 0.92197 0.91938 0.93030 0.95234 0.95021 0.80529 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.93 37.16 0.29 -0.95 16 2 C -0.10 -0.95 3.30 -89.23 -0.29 -1.24 16 3 H 0.09 0.85 7.71 -51.93 -0.40 0.45 16 4 C 0.10 0.87 5.78 -2.41 -0.01 0.86 16 5 N -0.61 -7.66 3.32 -169.30 -0.56 -8.22 16 6 C 0.54 7.66 7.24 -10.98 -0.08 7.58 16 7 O -0.52 -9.92 16.84 -13.50 -0.23 -10.15 16 8 C 0.07 0.77 3.24 -26.99 -0.09 0.69 16 9 H 0.11 0.95 7.91 -51.93 -0.41 0.54 16 10 C -0.10 -0.84 5.81 -26.52 -0.15 -1.00 16 11 C -0.17 -1.68 6.27 -104.10 -0.65 -2.34 16 12 C -0.07 -0.52 10.03 -39.72 -0.40 -0.92 16 13 C -0.15 -1.04 10.07 -39.53 -0.40 -1.44 16 14 C -0.08 -0.62 10.02 -39.68 -0.40 -1.01 16 15 C -0.14 -1.29 10.06 -39.30 -0.40 -1.69 16 16 C 0.11 1.23 7.04 -38.95 -0.27 0.95 16 17 O -0.27 -3.76 10.39 -39.22 -0.41 -4.17 16 18 C 0.12 1.77 5.55 -2.40 -0.01 1.75 16 19 C -0.08 -1.10 0.73 -153.11 -0.11 -1.21 16 20 C -0.13 -1.92 7.08 37.16 0.26 -1.66 16 21 C 0.17 3.04 4.85 -4.04 -0.02 3.02 16 22 N -0.75 -17.18 4.93 -59.91 -0.30 -17.48 16 23 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 24 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 27 Si 0.88 22.40 27.73 -169.99 -4.71 17.69 16 28 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 30 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 31 H 0.06 0.60 6.89 -51.93 -0.36 0.25 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.54 6.72 -51.93 -0.35 0.19 16 34 H 0.08 0.47 6.49 -51.93 -0.34 0.14 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.57 7.66 -51.93 -0.40 0.18 16 37 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 41 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 43 H 0.08 1.44 7.60 -51.93 -0.39 1.05 16 44 H 0.06 1.01 7.01 -51.93 -0.36 0.64 16 45 H 0.06 0.83 6.98 -51.93 -0.36 0.47 16 46 H 0.05 0.68 6.62 -51.93 -0.34 0.33 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.36 8.23 4.14 -40.82 -0.17 8.06 16 50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -35.33 391.56 -10.20 -45.53 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.68 Total: 4.79 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.99 Total: -5.43 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.08 Total: -54.16 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.63 Total: -14.32 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.33 -10.20 -45.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182055781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.233 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds