Wall clock time and date at job start Wed Apr 1 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.84272 * 140.39406 * 5 4 2 7 7 O 1.21277 * 120.00383 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99546 * 0.02562 * 6 5 4 9 9 H 1.09001 * 110.66872 * 301.78198 * 8 6 5 10 10 C 1.54701 * 110.75239 * 65.00125 * 8 6 5 11 11 C 1.51644 * 101.92834 * 143.60166 * 10 8 6 12 12 C 1.37740 * 132.17441 * 164.59171 * 11 10 8 13 13 C 1.38344 * 119.98081 * 180.36610 * 12 11 10 14 14 C 1.38281 * 119.76800 * 0.02562 * 13 12 11 15 15 C 1.37934 * 120.35011 * 359.80510 * 14 13 12 16 16 C 1.38885 * 107.04113 * 344.62039 * 11 10 8 17 17 O 1.36133 * 111.23453 * 358.92498 * 16 11 10 18 18 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 19 19 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 20 20 C 1.53002 * 110.34364 * 0.10624 * 19 2 1 21 21 C 1.53001 * 110.34653 * 237.84827 * 19 2 1 22 22 N 1.46498 * 109.47410 * 183.01191 * 21 19 2 23 23 C 1.36933 * 120.00279 * 180.02562 * 22 21 19 24 24 H 1.08005 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00277 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00240 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 119.99965 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47230 * 90.00323 * 27 25 23 29 29 H 1.48506 * 109.47288 * 210.00364 * 27 25 23 30 30 H 1.48502 * 109.47544 * 330.00554 * 27 25 23 31 31 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 32 32 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 33 33 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 34 34 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 35 35 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 36 36 H 1.08994 * 110.94408 * 261.76674 * 10 8 6 37 37 H 1.09002 * 110.93863 * 25.41043 * 10 8 6 38 38 H 1.08001 * 120.00488 * 0.39032 * 12 11 10 39 39 H 1.07997 * 120.11814 * 180.02562 * 13 12 11 40 40 H 1.08001 * 119.82897 * 179.83391 * 14 13 12 41 41 H 1.08004 * 119.88043 * 180.02562 * 15 14 13 42 42 H 1.08992 * 110.40889 * 280.80306 * 18 5 4 43 43 H 1.09000 * 110.40506 * 158.36626 * 18 5 4 44 44 H 1.09004 * 109.47342 * 176.98652 * 20 19 2 45 45 H 1.09000 * 109.46937 * 296.99283 * 20 19 2 46 46 H 1.09001 * 109.46721 * 56.98802 * 20 19 2 47 47 H 1.09006 * 109.46640 * 303.00792 * 21 19 2 48 48 H 1.09001 * 109.47083 * 63.00447 * 21 19 2 49 49 H 0.97003 * 119.99626 * 359.97438 * 22 21 19 50 50 H 0.97002 * 120.00721 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0831 -3.3101 -1.3530 7 8 2.3425 -4.3597 -0.8036 8 6 1.4985 -3.3109 -2.7420 9 1 0.5381 -2.7955 -2.7555 10 6 2.4799 -2.6677 -3.7502 11 6 2.2573 -3.5147 -4.9882 12 6 2.5952 -3.3269 -6.3102 13 6 2.2545 -4.2803 -7.2530 14 6 1.5745 -5.4194 -6.8628 15 6 1.2383 -5.6112 -5.5389 16 6 1.5810 -4.6581 -4.5829 17 8 1.3670 -4.6539 -3.2385 18 6 2.8825 -1.9400 0.6331 19 6 2.0664 -0.7703 1.2243 20 6 0.9063 -1.3038 2.0672 21 6 2.9671 0.1334 2.0687 22 7 3.5226 -0.6360 3.1847 23 6 4.3633 -0.0324 4.0813 24 1 4.6172 1.0110 3.9654 25 6 4.8892 -0.7613 5.1390 26 7 5.6969 -0.1809 6.0011 27 14 4.4495 -2.5656 5.3399 28 1 5.4318 -3.3996 4.6017 29 1 4.4788 -2.9249 6.7805 30 1 3.0885 -2.8069 4.7971 31 1 -0.3633 0.4797 0.9089 32 1 -0.3634 0.5473 -0.8698 33 1 -0.3634 -1.0269 -0.0391 34 1 1.3253 -0.7878 -2.0206 35 1 2.9957 -0.3211 -1.5793 36 1 2.2183 -1.6265 -3.9383 37 1 3.5087 -2.7515 -3.3999 38 1 3.1262 -2.4357 -6.6106 39 1 2.5187 -4.1354 -8.2901 40 1 1.3057 -6.1630 -7.5984 41 1 0.7075 -6.5039 -5.2425 42 1 3.9374 -1.6733 0.5690 43 1 2.7526 -2.8378 1.2374 44 1 1.2999 -1.8900 2.8976 45 1 0.3251 -0.4676 2.4560 46 1 0.2673 -1.9338 1.4484 47 1 3.7798 0.5157 1.4508 48 1 2.3830 0.9675 2.4574 49 1 3.2943 -1.5730 3.2889 50 1 6.0641 -0.6901 6.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182055781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:55 Heat of formation + Delta-G solvation = -35.384158 kcal Electronic energy + Delta-G solvation = -30672.288758 eV Core-core repulsion = 26664.644996 eV Total energy + Delta-G solvation = -4007.643763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53544 -41.32220 -39.55413 -38.21656 -36.69727 -34.83915 -33.72890 -33.30895 -31.64514 -31.03604 -30.73191 -28.66001 -27.45216 -26.68147 -25.36798 -24.49141 -23.29743 -22.65427 -22.39844 -20.71757 -20.22675 -19.40407 -18.86937 -18.05443 -17.70679 -17.45977 -16.93432 -16.58866 -16.51953 -15.75263 -15.63122 -15.28751 -15.19538 -15.02223 -14.94252 -14.63341 -14.42758 -14.30930 -14.12803 -14.02285 -13.83316 -13.60402 -13.45198 -13.28880 -13.03931 -12.93245 -12.68395 -12.64813 -12.55007 -12.39930 -12.23598 -12.11210 -11.88441 -11.77723 -11.52705 -11.47893 -11.25562 -11.03825 -10.97384 -9.88009 -9.87035 -9.28625 -9.18754 -8.04815 -5.35681 0.29537 0.38554 1.28945 1.32481 1.34773 1.37738 1.40040 2.35326 2.43579 2.73965 3.06382 3.27330 3.28501 3.39925 3.52326 3.66307 3.73847 3.84134 3.90783 3.95267 4.19939 4.20249 4.23215 4.28542 4.29946 4.49247 4.51200 4.52463 4.60188 4.64998 4.67490 4.69016 4.75944 4.81018 4.87430 5.00260 5.01830 5.05195 5.06950 5.10213 5.24629 5.34660 5.35532 5.40404 5.42545 5.53992 5.58364 5.63370 5.76253 6.14688 6.20080 6.37492 6.89067 7.06882 7.84807 8.00636 9.16783 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.002515 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.693043 B =11129.591094 C =11710.036074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.110 0.890 4 C 0.097 3.903 5 N -0.607 5.607 6 C 0.532 3.468 7 O -0.581 6.581 8 C 0.073 3.927 9 H 0.142 0.858 10 C -0.088 4.088 11 C -0.182 4.182 12 C -0.070 4.070 13 C -0.146 4.146 14 C -0.085 4.085 15 C -0.154 4.154 16 C 0.068 3.932 17 O -0.313 6.313 18 C 0.116 3.884 19 C -0.071 4.071 20 C -0.131 4.131 21 C 0.169 3.831 22 N -0.759 5.759 23 C -0.222 4.222 24 H 0.066 0.934 25 C -0.059 4.059 26 N -0.981 5.981 27 Si 0.939 3.061 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.259 1.259 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.084 0.916 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.027 0.973 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.362 0.638 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 -1.297 -32.430 35.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.129 0.871 4 C -0.024 4.024 5 N -0.340 5.340 6 C 0.320 3.680 7 O -0.460 6.460 8 C 0.014 3.986 9 H 0.160 0.840 10 C -0.125 4.125 11 C -0.183 4.183 12 C -0.088 4.088 13 C -0.163 4.163 14 C -0.103 4.103 15 C -0.172 4.172 16 C 0.024 3.976 17 O -0.227 6.227 18 C -0.006 4.006 19 C -0.072 4.072 20 C -0.188 4.188 21 C 0.044 3.956 22 N -0.405 5.405 23 C -0.354 4.354 24 H 0.084 0.916 25 C -0.251 4.251 26 N -0.632 5.632 27 Si 0.767 3.233 28 H -0.211 1.211 29 H -0.221 1.221 30 H -0.184 1.184 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.160 0.840 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.146 0.854 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.195 0.805 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.875 -1.953 -31.967 34.903 hybrid contribution 0.374 -1.466 1.528 2.150 sum -13.501 -3.419 -30.439 33.474 Atomic orbital electron populations 1.21923 0.93032 1.01799 1.03132 1.22157 0.97391 0.99991 0.91275 0.87146 1.22995 1.03077 0.78895 0.97439 1.48852 1.61796 1.06284 1.17076 1.20217 0.78139 0.82238 0.87387 1.90744 1.54119 1.32719 1.68454 1.23219 1.02006 0.82509 0.90839 0.84040 1.21789 0.99415 1.01859 0.89469 1.20922 1.03710 0.97387 0.96308 1.20698 0.97856 1.00401 0.89814 1.21494 1.00023 0.93842 1.00989 1.21263 0.96463 0.98430 0.94094 1.20572 1.04921 0.99786 0.91970 1.20019 0.97299 0.97370 0.82942 1.86903 1.87435 1.29011 1.19335 1.22374 0.97578 0.97961 0.82731 1.21651 0.95162 0.94525 0.95877 1.21871 0.97314 1.01098 0.98493 1.20917 0.94274 0.93032 0.87423 1.42832 1.56741 1.10251 1.30649 1.19059 1.17846 0.95495 1.02955 0.91609 1.25327 1.00299 1.01513 0.97924 1.69841 1.38147 1.37366 1.17829 0.85658 0.78772 0.82085 0.76742 1.21150 1.22064 1.18433 0.92205 0.89909 0.93318 0.86654 0.88252 0.83957 0.89712 0.82915 0.82377 0.82444 0.85361 0.90917 0.93244 0.95402 0.90826 0.91921 0.94523 0.94546 0.80533 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.93 71.98 0.57 -1.30 16 2 C -0.09 -1.42 3.30 -9.89 -0.03 -1.45 16 3 H 0.11 1.49 7.71 -2.38 -0.02 1.47 16 4 C 0.10 1.28 5.78 86.53 0.50 1.78 16 5 N -0.61 -14.27 3.32 -807.94 -2.68 -16.95 16 6 C 0.53 15.10 7.24 87.66 0.64 15.74 16 7 O -0.58 -23.55 16.84 15.20 0.26 -23.29 16 8 C 0.07 1.51 3.24 30.43 0.10 1.61 16 9 H 0.14 1.96 7.91 -2.39 -0.02 1.94 16 10 C -0.09 -1.28 5.81 30.73 0.18 -1.10 16 11 C -0.18 -3.11 6.27 -19.53 -0.12 -3.23 16 12 C -0.07 -0.84 10.03 22.18 0.22 -0.62 16 13 C -0.15 -1.51 10.07 22.31 0.22 -1.28 16 14 C -0.08 -1.05 10.02 22.21 0.22 -0.82 16 15 C -0.15 -2.84 10.06 22.45 0.23 -2.61 16 16 C 0.07 1.53 7.04 22.68 0.16 1.69 16 17 O -0.31 -8.76 10.39 -76.84 -0.80 -9.56 16 18 C 0.12 3.50 5.55 86.54 0.48 3.98 16 19 C -0.07 -1.86 0.73 -51.27 -0.04 -1.90 16 20 C -0.13 -3.62 7.08 71.98 0.51 -3.11 16 21 C 0.17 5.78 4.85 86.38 0.42 6.20 16 22 N -0.76 -34.70 4.93 -343.45 -1.69 -36.39 16 23 C -0.22 -12.52 10.47 84.03 0.88 -11.64 16 24 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 25 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 26 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 27 Si 0.94 47.52 27.73 68.60 1.90 49.43 16 28 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 30 H -0.26 -12.18 6.52 99.48 0.65 -11.54 16 31 H 0.06 0.89 6.89 -2.39 -0.02 0.87 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.74 6.72 -2.39 -0.02 0.73 16 34 H 0.12 0.72 6.49 -2.39 -0.02 0.70 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.14 0.83 7.66 -2.39 -0.02 0.82 16 37 H 0.08 1.45 7.92 -2.39 -0.02 1.43 16 38 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 41 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.07 2.32 7.86 -2.39 -0.02 2.31 16 43 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 44 H 0.03 0.93 7.01 -2.38 -0.02 0.91 16 45 H 0.07 1.85 6.98 -2.39 -0.02 1.84 16 46 H 0.06 1.59 6.62 -2.39 -0.02 1.57 16 47 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.36 16.60 4.14 -92.71 -0.38 16.21 16 50 H 0.26 15.89 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -83.27 391.56 3.40 -79.87 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.50 Total: 20.96 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.60 Total: -1.12 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -4.07 Total: -116.29 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.54 Total: -32.85 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.90 Total: 49.43 kcal Total: -83.27 3.40 -79.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182055781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.490 kcal (2) G-P(sol) polarization free energy of solvation -83.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds