Wall clock time and date at job start Wed Apr 1 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50176 * 2 1 4 4 C 1.53192 * 109.49673 * 239.93134 * 2 1 3 5 5 N 1.46922 * 108.77927 * 185.41620 * 4 2 1 6 6 C 1.34778 * 120.63012 * 233.58691 * 5 4 2 7 7 O 1.21588 * 120.00103 * 5.85113 * 6 5 4 8 8 C 1.47602 * 119.99982 * 185.84697 * 6 5 4 9 9 C 1.39753 * 120.26823 * 221.60875 * 8 6 5 10 10 C 1.37468 * 120.20157 * 180.22146 * 9 8 6 11 11 C 1.39594 * 120.43316 * 0.02562 * 10 9 8 12 12 C 1.39272 * 119.08833 * 359.60114 * 11 10 9 13 13 C 1.37240 * 120.92423 * 0.60544 * 12 11 10 14 14 C 1.51680 * 106.94436 * 180.59168 * 12 11 10 15 15 C 1.54707 * 101.91088 * 15.73219 * 14 12 11 16 16 O 1.35999 * 129.70926 * 179.57691 * 11 10 9 17 17 C 1.46926 * 118.73917 * 53.85943 * 5 4 2 18 18 C 1.53620 * 108.54460 * 306.09899 * 17 5 4 19 19 C 1.53042 * 109.49732 * 120.09807 * 2 1 3 20 20 H 1.09001 * 109.46174 * 61.29509 * 19 2 1 21 21 C 1.53001 * 109.45857 * 301.33301 * 19 2 1 22 22 N 1.46507 * 109.46874 * 175.00261 * 21 19 2 23 23 C 1.36935 * 119.99613 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00039 * 359.97438 * 23 22 21 25 25 C 1.38817 * 119.99746 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99836 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 119.99943 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46777 * 90.00463 * 27 25 23 29 29 H 1.48498 * 109.47083 * 209.99811 * 27 25 23 30 30 H 1.48500 * 109.47117 * 330.00379 * 27 25 23 31 31 H 1.09000 * 109.47764 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46625 * 300.06765 * 1 2 3 33 33 H 1.09003 * 109.47205 * 60.06301 * 1 2 3 34 34 H 1.08999 * 109.58614 * 65.62401 * 4 2 1 35 35 H 1.09007 * 109.58729 * 305.20767 * 4 2 1 36 36 H 1.07995 * 119.89876 * 0.19845 * 9 8 6 37 37 H 1.07998 * 119.78646 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.04602 * 179.57096 * 13 12 11 39 39 H 1.08998 * 110.94394 * 257.57125 * 14 12 11 40 40 H 1.08998 * 110.94740 * 133.89893 * 14 12 11 41 41 H 1.08996 * 110.74010 * 92.89806 * 15 14 12 42 42 H 1.08997 * 110.73956 * 216.22912 * 15 14 12 43 43 H 1.09002 * 109.58378 * 65.92843 * 17 5 4 44 44 H 1.08999 * 109.59014 * 186.35222 * 17 5 4 45 45 H 1.09001 * 109.63345 * 294.86401 * 18 17 5 46 46 H 1.08994 * 109.46137 * 174.73869 * 18 17 5 47 47 H 1.09000 * 109.46850 * 294.99629 * 21 19 2 48 48 H 1.08999 * 109.47278 * 55.00011 * 21 19 2 49 49 H 0.96999 * 119.99761 * 359.97438 * 22 21 19 50 50 H 0.96999 * 120.00149 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5045 -0.8290 -1.1698 6 6 4.2810 -0.3861 -2.1785 7 8 3.7807 0.2018 -3.1179 8 6 5.7388 -0.6146 -2.1427 9 6 6.6201 0.3965 -2.5352 10 6 7.9774 0.1806 -2.5057 11 6 8.4890 -1.0481 -2.0848 12 6 7.6058 -2.0490 -1.6875 13 6 6.2490 -1.8448 -1.7173 14 6 8.4463 -3.2430 -1.2770 15 6 9.8482 -2.6077 -1.1199 16 8 9.7800 -1.4651 -1.9894 17 6 4.1050 -1.4320 0.0279 18 6 3.5708 -0.6955 1.2658 19 6 2.0408 -0.7235 1.2481 20 1 1.6967 -1.7577 1.2348 21 6 1.5037 -0.0239 2.4984 22 7 1.8932 -0.7841 3.6887 23 6 1.5217 -0.3470 4.9321 24 1 0.9421 0.5584 5.0353 25 6 1.8912 -1.0670 6.0599 26 7 1.5346 -0.6466 7.2551 27 14 2.8944 -2.6326 5.8813 28 1 4.3413 -2.3009 5.9238 29 1 2.5664 -3.5602 6.9936 30 1 2.5731 -3.2812 4.5847 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3634 0.5129 -0.8906 34 1 1.7637 -0.1575 -2.1389 35 1 1.6051 -1.7213 -1.2985 36 1 6.2337 1.3501 -2.8631 37 1 8.6524 0.9668 -2.8101 38 1 5.5767 -2.6332 -1.4125 39 1 8.4487 -4.0044 -2.0569 40 1 8.0983 -3.6578 -0.3311 41 1 10.0185 -2.2985 -0.0887 42 1 10.6241 -3.2983 -1.4502 43 1 3.8337 -2.4863 0.0813 44 1 5.1895 -1.3335 -0.0179 45 1 3.9159 0.3383 1.2541 46 1 3.9334 -1.1899 2.1670 47 1 1.9186 0.9823 2.5582 48 1 0.4166 0.0339 2.4437 49 1 2.4135 -1.5975 3.5958 50 1 1.7925 -1.1499 8.0432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185181356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:03 Heat of formation + Delta-G solvation = -46.650027 kcal Electronic energy + Delta-G solvation = -30478.449962 eV Core-core repulsion = 26470.317675 eV Total energy + Delta-G solvation = -4008.132287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.28535 -41.36103 -39.42779 -38.07394 -36.71278 -35.08378 -33.75508 -33.60904 -32.33317 -31.54132 -30.24720 -28.67146 -27.71179 -25.69989 -24.73303 -24.00556 -23.45404 -22.94341 -22.56277 -21.24192 -20.30952 -19.60753 -18.59879 -18.18872 -17.83848 -17.28375 -16.94012 -16.62132 -16.24354 -16.00615 -15.67573 -15.52153 -15.22187 -14.95373 -14.73193 -14.61640 -14.42699 -14.27521 -14.11405 -14.02393 -13.85768 -13.62112 -13.45784 -13.23265 -13.12701 -12.91645 -12.80465 -12.68310 -12.65304 -12.16868 -12.01768 -11.89791 -11.84279 -11.79667 -11.64831 -11.50131 -11.24005 -11.00491 -10.89424 -9.98306 -9.72971 -9.26461 -9.21276 -8.01045 -5.34693 -0.16121 0.20900 1.38065 1.43825 1.51378 1.57042 1.89533 2.25281 2.50734 2.59849 3.29447 3.30291 3.45279 3.53774 3.62330 3.72684 3.80607 3.83302 3.97802 4.05943 4.11619 4.17180 4.20686 4.28611 4.38126 4.43945 4.48597 4.60150 4.61172 4.66716 4.72896 4.78943 4.81417 4.81587 4.87946 4.93345 4.98331 5.05289 5.07015 5.09558 5.16763 5.21771 5.23064 5.28526 5.35967 5.41833 5.48975 5.58672 5.77390 6.05700 6.22666 6.29997 7.02549 7.10083 7.85528 8.06884 9.20913 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.003152 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.555242 B = 8882.408061 C =11043.645501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.061 0.939 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.565 3.435 7 O -0.579 6.579 8 C -0.174 4.174 9 C -0.039 4.039 10 C -0.150 4.150 11 C 0.117 3.883 12 C -0.185 4.185 13 C -0.035 4.035 14 C -0.106 4.106 15 C 0.043 3.957 16 O -0.319 6.319 17 C 0.103 3.897 18 C -0.126 4.126 19 C -0.082 4.082 20 H 0.082 0.918 21 C 0.159 3.841 22 N -0.754 5.754 23 C -0.236 4.236 24 H 0.050 0.950 25 C -0.068 4.068 26 N -0.988 5.988 27 Si 0.958 3.042 28 H -0.275 1.275 29 H -0.298 1.298 30 H -0.244 1.244 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.012 0.988 48 H 0.030 0.970 49 H 0.368 0.632 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.960 -7.662 -23.119 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.355 3.645 7 O -0.460 6.460 8 C -0.177 4.177 9 C -0.058 4.058 10 C -0.169 4.169 11 C 0.071 3.929 12 C -0.186 4.186 13 C -0.054 4.054 14 C -0.143 4.143 15 C -0.030 4.030 16 O -0.233 6.233 17 C -0.019 4.019 18 C -0.164 4.164 19 C -0.101 4.101 20 H 0.101 0.899 21 C 0.033 3.967 22 N -0.400 5.400 23 C -0.367 4.367 24 H 0.068 0.932 25 C -0.259 4.259 26 N -0.638 5.638 27 Si 0.784 3.216 28 H -0.201 1.201 29 H -0.225 1.225 30 H -0.168 1.168 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.030 0.970 48 H 0.048 0.952 49 H 0.202 0.798 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.794 -7.141 -23.562 28.723 hybrid contribution 0.163 -0.317 0.791 0.868 sum 14.957 -7.458 -22.770 28.245 Atomic orbital electron populations 1.21810 0.93409 1.02857 1.02213 1.21340 0.96850 0.99179 0.93391 0.92027 1.21734 0.78343 1.01752 0.98308 1.48088 1.07159 1.59869 1.17991 1.18455 0.86802 0.77474 0.81741 1.90752 1.75735 1.43421 1.36112 1.19663 0.92218 0.97110 1.08735 1.20952 0.91638 0.98825 0.94358 1.20352 0.94971 0.95342 1.06198 1.20102 0.84229 0.93876 0.94736 1.21007 0.93855 0.97095 1.06670 1.20580 0.93996 0.95947 0.94839 1.21932 0.92221 0.95392 1.04773 1.24212 0.98919 0.85195 0.94712 1.86786 1.23594 1.48224 1.64672 1.22319 0.99384 0.97803 0.82381 1.21986 0.95320 1.01137 0.97977 1.21298 0.95300 1.00262 0.93252 0.89940 1.20872 0.97183 0.93611 0.85064 1.42667 1.66230 1.29017 1.02064 1.19026 1.27084 1.06377 0.84201 0.93198 1.25589 1.02746 1.03038 0.94498 1.69905 1.53113 1.42677 0.98122 0.85368 0.78791 0.79384 0.78056 1.20061 1.22465 1.16817 0.91489 0.92755 0.91424 0.89774 0.89332 0.84316 0.83399 0.83135 0.87687 0.86781 0.89322 0.84930 0.88615 0.87993 0.92580 0.90738 0.97025 0.95182 0.79834 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.81 71.98 0.63 -2.46 16 2 C -0.09 -2.03 2.41 -10.72 -0.03 -2.06 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.12 2.55 5.72 86.36 0.49 3.05 16 5 N -0.60 -13.08 2.97 -821.74 -2.44 -15.52 16 6 C 0.57 14.37 7.30 86.71 0.63 15.01 16 7 O -0.58 -18.73 16.37 -3.99 -0.07 -18.80 16 8 C -0.17 -3.73 5.08 -20.06 -0.10 -3.83 16 9 C -0.04 -0.80 9.63 22.45 0.22 -0.58 16 10 C -0.15 -2.77 10.05 22.42 0.23 -2.55 16 11 C 0.12 2.15 7.05 22.85 0.16 2.31 16 12 C -0.19 -2.91 6.26 -19.54 -0.12 -3.03 16 13 C -0.04 -0.59 7.38 22.42 0.17 -0.42 16 14 C -0.11 -0.95 7.12 30.74 0.22 -0.73 16 15 C 0.04 0.40 8.00 72.56 0.58 0.98 16 16 O -0.32 -5.45 11.09 -93.54 -1.04 -6.49 16 17 C 0.10 1.90 4.97 86.51 0.43 2.33 16 18 C -0.13 -3.10 5.26 30.82 0.16 -2.93 16 19 C -0.08 -2.18 1.73 -10.76 -0.02 -2.20 16 20 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 21 C 0.16 5.82 5.41 86.38 0.47 6.28 16 22 N -0.75 -33.96 5.12 -343.43 -1.76 -35.72 16 23 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 24 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 25 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 26 N -0.99 -63.24 13.97 21.65 0.30 -62.94 16 27 Si 0.96 43.67 27.74 68.60 1.90 45.57 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 30 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.33 6.30 -2.39 -0.02 1.32 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.98 7.00 -2.39 -0.02 1.96 16 35 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 36 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.15 1.92 6.73 -2.91 -0.02 1.90 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 44 H 0.10 1.71 4.80 -2.39 -0.01 1.70 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.07 1.96 7.15 -2.39 -0.02 1.95 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.03 1.14 6.14 -2.39 -0.01 1.12 16 49 H 0.37 15.30 4.71 -92.71 -0.44 14.87 16 50 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.93 389.15 2.83 -73.10 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.46 Total: 27.64 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.47 Total: -6.84 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -3.89 Total: -114.17 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.10 Total: -25.29 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Total: -75.93 2.83 -73.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185181356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.447 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds