Wall clock time and date at job start Wed Apr 1 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.52309 * 2 1 4 4 C 1.53198 * 109.50140 * 120.07553 * 2 1 3 5 5 N 1.46922 * 108.89481 * 174.51689 * 4 2 1 6 6 C 1.34775 * 120.62996 * 126.46258 * 5 4 2 7 7 O 1.21575 * 119.99963 * 354.17743 * 6 5 4 8 8 C 1.47610 * 119.99585 * 174.17961 * 6 5 4 9 9 C 1.39754 * 120.26427 * 139.34059 * 8 6 5 10 10 C 1.37469 * 120.19968 * 179.86836 * 9 8 6 11 11 C 1.39583 * 120.43368 * 0.04532 * 10 9 8 12 12 C 1.39185 * 119.10371 * 0.18382 * 11 10 9 13 13 C 1.37310 * 120.93453 * 359.37433 * 12 11 10 14 14 C 1.51674 * 106.99989 * 179.44492 * 12 11 10 15 15 C 1.54693 * 101.89197 * 344.47977 * 14 12 11 16 16 O 1.36001 * 129.72111 * 180.62130 * 11 10 9 17 17 C 1.46965 * 118.71341 * 306.64352 * 5 4 2 18 18 C 1.53195 * 108.89007 * 53.35650 * 17 5 4 19 19 C 1.53038 * 109.31028 * 305.44183 * 18 17 5 20 20 H 1.08990 * 109.45994 * 301.34401 * 19 18 17 21 21 C 1.53005 * 109.44550 * 181.37696 * 19 18 17 22 22 N 1.46498 * 109.47225 * 64.94108 * 21 19 18 23 23 C 1.36937 * 120.00204 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99571 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99881 * 179.97438 * 23 22 21 26 26 N 1.31614 * 120.00100 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99965 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46968 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47309 * 119.99680 * 27 25 23 30 30 H 1.48497 * 109.47486 * 240.00219 * 27 25 23 31 31 H 1.09004 * 109.46975 * 299.92156 * 1 2 3 32 32 H 1.08995 * 109.47322 * 59.92103 * 1 2 3 33 33 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58455 * 294.37848 * 4 2 1 35 35 H 1.09003 * 109.58256 * 54.65664 * 4 2 1 36 36 H 1.08003 * 119.89676 * 359.84137 * 9 8 6 37 37 H 1.08008 * 119.78336 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.07266 * 180.58586 * 13 12 11 39 39 H 1.08998 * 110.94379 * 226.32822 * 14 12 11 40 40 H 1.09002 * 110.97654 * 102.64062 * 14 12 11 41 41 H 1.09006 * 110.74243 * 267.03683 * 15 14 12 42 42 H 1.09001 * 110.90296 * 143.78358 * 15 14 12 43 43 H 1.08995 * 109.46933 * 293.56941 * 17 5 4 44 44 H 1.09004 * 109.59306 * 173.21790 * 17 5 4 45 45 H 1.08994 * 109.49903 * 185.48973 * 18 17 5 46 46 H 1.09004 * 109.52421 * 65.40891 * 18 17 5 47 47 H 1.09001 * 109.46812 * 184.93947 * 21 19 18 48 48 H 1.08999 * 109.47322 * 304.93464 * 21 19 18 49 49 H 0.97010 * 119.99645 * 359.97438 * 22 21 19 50 50 H 0.96999 * 119.99972 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7237 1.2497 5 7 3.5045 -0.8319 1.1715 6 6 4.2806 -0.3909 2.1812 7 8 3.7802 0.1970 3.1204 8 6 5.7382 -0.6217 2.1468 9 6 6.6200 0.3808 2.5596 10 6 7.9771 0.1634 2.5295 11 6 8.4879 -1.0577 2.0865 12 6 7.6049 -2.0505 1.6720 13 6 6.2474 -1.8471 1.7065 14 6 8.4438 -3.2381 1.2403 15 6 9.8471 -2.6026 1.0993 16 8 9.7783 -1.4762 1.9897 17 6 4.1053 -1.4266 -0.0307 18 6 3.5708 -0.6950 -1.2660 19 6 2.0408 -0.7232 -1.2483 20 1 1.6968 -1.7573 -1.2352 21 6 1.5039 -0.0231 -2.4984 22 7 1.8933 -0.7830 -3.6888 23 6 1.5220 -0.3455 -4.9322 24 1 0.9418 0.5596 -5.0351 25 6 1.8914 -1.0653 -6.0601 26 7 2.5981 -2.1686 -5.9346 27 14 1.3856 -0.4681 -7.7563 28 1 0.6030 0.7872 -7.6260 29 1 2.5990 -0.2118 -8.5731 30 1 0.5532 -1.5045 -8.4182 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5150 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7638 -0.1578 2.1389 35 1 1.6034 -1.7206 1.2995 36 1 6.2341 1.3293 2.9029 37 1 8.6525 0.9428 2.8505 38 1 5.5746 -2.6306 1.3905 39 1 8.0973 -3.6334 0.2855 40 1 8.4429 -4.0150 2.0049 41 1 10.0212 -2.2746 0.0745 42 1 10.6231 -3.2991 1.4171 43 1 3.8377 -2.4817 -0.0866 44 1 5.1896 -1.3245 0.0138 45 1 3.9334 -1.1897 -2.1670 46 1 3.9158 0.3389 -1.2547 47 1 0.4169 0.0348 -2.4438 48 1 1.9188 0.9831 -2.5578 49 1 2.4141 -1.5962 -3.5963 50 1 2.8565 -2.6713 -6.7228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185181358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:10 Heat of formation + Delta-G solvation = -30.192632 kcal Electronic energy + Delta-G solvation = -30358.696387 eV Core-core repulsion = 26351.277745 eV Total energy + Delta-G solvation = -4007.418641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52879 -40.35086 -38.25900 -37.16595 -35.03559 -33.66310 -33.04706 -32.00659 -30.71895 -30.28288 -29.57688 -26.92177 -26.69916 -24.46939 -23.69063 -23.02042 -22.39621 -22.13925 -21.27205 -20.00064 -19.21487 -17.84845 -17.35803 -17.02842 -17.01174 -16.52530 -15.98473 -15.15563 -14.91798 -14.71685 -14.54237 -14.26298 -13.92166 -13.83141 -13.60063 -13.54985 -13.39818 -13.16779 -13.10173 -12.89784 -12.61816 -12.53516 -12.39670 -12.12782 -11.92682 -11.80233 -11.59762 -11.19603 -11.13011 -10.99646 -10.89060 -10.82418 -10.38353 -10.30810 -10.18091 -9.98196 -9.84906 -9.64157 -9.20074 -8.87501 -8.66071 -8.41001 -6.91306 -5.78390 -3.05906 0.68601 0.98067 2.56302 2.83542 2.98472 3.41872 3.44279 3.48084 3.49839 4.01627 4.15629 4.40379 4.49550 4.57649 4.62830 4.79896 4.87280 4.94337 4.96504 5.00879 5.04034 5.11995 5.21973 5.31713 5.35401 5.38531 5.46069 5.50542 5.56789 5.63910 5.69620 5.78615 5.80646 5.87684 5.92353 5.97098 5.98502 6.03609 6.09076 6.17300 6.23980 6.29946 6.33826 6.47655 6.51413 6.63379 6.77730 6.83477 6.93682 7.34596 7.69841 8.08063 8.41214 9.52503 10.10942 10.45568 11.44740 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.002817 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.205017 B = 9938.977454 C =11998.041722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.566 3.434 7 O -0.543 6.543 8 C -0.157 4.157 9 C -0.030 4.030 10 C -0.145 4.145 11 C 0.127 3.873 12 C -0.182 4.182 13 C -0.036 4.036 14 C -0.110 4.110 15 C 0.050 3.950 16 O -0.303 6.303 17 C 0.097 3.903 18 C -0.125 4.125 19 C -0.089 4.089 20 H 0.072 0.928 21 C 0.156 3.844 22 N -0.732 5.732 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.024 0.976 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.922 -1.412 18.416 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.334 5.334 6 C 0.355 3.645 7 O -0.422 6.422 8 C -0.160 4.160 9 C -0.049 4.049 10 C -0.163 4.163 11 C 0.081 3.919 12 C -0.183 4.183 13 C -0.054 4.054 14 C -0.147 4.147 15 C -0.024 4.024 16 O -0.216 6.216 17 C -0.025 4.025 18 C -0.163 4.163 19 C -0.108 4.108 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.042 0.958 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.780 -0.929 18.872 21.754 hybrid contribution -0.088 -0.215 -1.246 1.267 sum 10.692 -1.144 17.627 20.648 Atomic orbital electron populations 1.21828 0.94361 1.02176 1.02069 1.21455 0.96114 0.99984 0.94119 0.90856 1.21724 0.78417 1.00926 0.99362 1.48052 1.07045 1.60481 1.17800 1.18151 0.86011 0.78221 0.82162 1.90765 1.74925 1.41727 1.34753 1.19708 0.93332 0.96053 1.06908 1.20885 0.91198 0.98703 0.94068 1.20186 0.95099 0.94786 1.06258 1.19834 0.83605 0.93508 0.94904 1.20661 0.94015 0.96216 1.07442 1.20504 0.93454 0.96373 0.95080 1.21818 0.92993 0.96354 1.03540 1.23896 0.98068 0.86267 0.94217 1.86802 1.23979 1.48063 1.62794 1.22195 0.98704 0.97331 0.84257 1.21936 0.96065 1.01212 0.97131 1.21340 0.94702 1.00155 0.94563 0.90982 1.20757 0.96674 0.94061 0.85623 1.42385 1.65357 1.29004 1.00868 1.19278 1.27398 1.06191 0.83840 0.91243 1.24711 1.01002 0.97565 0.97781 1.69657 1.42920 1.17390 1.28387 0.86137 0.77658 0.77769 0.84777 1.20597 1.21912 1.21907 0.92983 0.91304 0.92513 0.89134 0.91404 0.84174 0.84701 0.84745 0.88436 0.88968 0.90055 0.87379 0.91117 0.89259 0.89262 0.91744 0.95781 0.96578 0.78345 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.82 37.16 0.33 -1.44 16 2 C -0.10 -1.27 2.42 -90.50 -0.22 -1.49 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.47 5.72 -3.71 -0.02 1.44 16 5 N -0.60 -7.68 2.98 -173.93 -0.52 -8.19 16 6 C 0.57 7.87 7.31 -12.44 -0.09 7.78 16 7 O -0.54 -9.13 16.36 5.30 0.09 -9.04 16 8 C -0.16 -1.88 5.10 -104.92 -0.53 -2.41 16 9 C -0.03 -0.33 9.62 -39.30 -0.38 -0.71 16 10 C -0.14 -1.46 10.05 -39.36 -0.40 -1.86 16 11 C 0.13 1.35 7.04 -38.73 -0.27 1.07 16 12 C -0.18 -1.78 6.26 -104.13 -0.65 -2.43 16 13 C -0.04 -0.37 7.38 -39.33 -0.29 -0.66 16 14 C -0.11 -0.76 7.12 -26.51 -0.19 -0.94 16 15 C 0.05 0.33 8.00 38.05 0.30 0.64 16 16 O -0.30 -3.03 11.09 -19.74 -0.22 -3.25 16 17 C 0.10 1.15 4.91 -3.69 -0.02 1.14 16 18 C -0.13 -1.82 5.25 -26.61 -0.14 -1.96 16 19 C -0.09 -1.35 1.73 -90.58 -0.16 -1.51 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 21 C 0.16 3.04 5.41 -4.04 -0.02 3.02 16 22 N -0.73 -17.92 5.32 -59.91 -0.32 -18.24 16 23 C -0.24 -6.50 9.99 -15.06 -0.15 -6.66 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 27 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.22 6.68 -52.49 -0.35 0.87 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.09 0.98 4.80 -51.93 -0.25 0.73 16 45 H 0.09 1.48 7.15 -51.93 -0.37 1.10 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 9.72 6.84 -40.82 -0.28 9.44 16 50 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -32.90 392.15 -10.08 -42.98 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.72 Total: 7.07 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.99 Total: -7.50 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.11 Total: -53.34 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.13 Total: -12.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.90 -10.08 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185181358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.788 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds