Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.52309 * 2 1 4 4 C 1.53198 * 109.50140 * 120.07553 * 2 1 3 5 5 N 1.46922 * 108.89481 * 174.51689 * 4 2 1 6 6 C 1.34775 * 120.62996 * 126.46258 * 5 4 2 7 7 O 1.21575 * 119.99963 * 354.17743 * 6 5 4 8 8 C 1.47610 * 119.99585 * 174.17961 * 6 5 4 9 9 C 1.39754 * 120.26427 * 139.34059 * 8 6 5 10 10 C 1.37469 * 120.19968 * 179.86836 * 9 8 6 11 11 C 1.39583 * 120.43368 * 0.04532 * 10 9 8 12 12 C 1.39185 * 119.10371 * 0.18382 * 11 10 9 13 13 C 1.37310 * 120.93453 * 359.37433 * 12 11 10 14 14 C 1.51674 * 106.99989 * 179.44492 * 12 11 10 15 15 C 1.54693 * 101.89197 * 344.47977 * 14 12 11 16 16 O 1.36001 * 129.72111 * 180.62130 * 11 10 9 17 17 C 1.46965 * 118.71341 * 306.64352 * 5 4 2 18 18 C 1.53195 * 108.89007 * 53.35650 * 17 5 4 19 19 C 1.53038 * 109.31028 * 305.44183 * 18 17 5 20 20 H 1.08990 * 109.45994 * 301.34401 * 19 18 17 21 21 C 1.53005 * 109.44550 * 181.37696 * 19 18 17 22 22 N 1.46498 * 109.47225 * 64.94108 * 21 19 18 23 23 C 1.36937 * 120.00204 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99571 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99881 * 179.97438 * 23 22 21 26 26 N 1.31614 * 120.00100 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99965 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46968 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47309 * 119.99680 * 27 25 23 30 30 H 1.48497 * 109.47486 * 240.00219 * 27 25 23 31 31 H 1.09004 * 109.46975 * 299.92156 * 1 2 3 32 32 H 1.08995 * 109.47322 * 59.92103 * 1 2 3 33 33 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58455 * 294.37848 * 4 2 1 35 35 H 1.09003 * 109.58256 * 54.65664 * 4 2 1 36 36 H 1.08003 * 119.89676 * 359.84137 * 9 8 6 37 37 H 1.08008 * 119.78336 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.07266 * 180.58586 * 13 12 11 39 39 H 1.08998 * 110.94379 * 226.32822 * 14 12 11 40 40 H 1.09002 * 110.97654 * 102.64062 * 14 12 11 41 41 H 1.09006 * 110.74243 * 267.03683 * 15 14 12 42 42 H 1.09001 * 110.90296 * 143.78358 * 15 14 12 43 43 H 1.08995 * 109.46933 * 293.56941 * 17 5 4 44 44 H 1.09004 * 109.59306 * 173.21790 * 17 5 4 45 45 H 1.08994 * 109.49903 * 185.48973 * 18 17 5 46 46 H 1.09004 * 109.52421 * 65.40891 * 18 17 5 47 47 H 1.09001 * 109.46812 * 184.93947 * 21 19 18 48 48 H 1.08999 * 109.47322 * 304.93464 * 21 19 18 49 49 H 0.97010 * 119.99645 * 359.97438 * 22 21 19 50 50 H 0.96999 * 119.99972 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7237 1.2497 5 7 3.5045 -0.8319 1.1715 6 6 4.2806 -0.3909 2.1812 7 8 3.7802 0.1970 3.1204 8 6 5.7382 -0.6217 2.1468 9 6 6.6200 0.3808 2.5596 10 6 7.9771 0.1634 2.5295 11 6 8.4879 -1.0577 2.0865 12 6 7.6049 -2.0505 1.6720 13 6 6.2474 -1.8471 1.7065 14 6 8.4438 -3.2381 1.2403 15 6 9.8471 -2.6026 1.0993 16 8 9.7783 -1.4762 1.9897 17 6 4.1053 -1.4266 -0.0307 18 6 3.5708 -0.6950 -1.2660 19 6 2.0408 -0.7232 -1.2483 20 1 1.6968 -1.7573 -1.2352 21 6 1.5039 -0.0231 -2.4984 22 7 1.8933 -0.7830 -3.6888 23 6 1.5220 -0.3455 -4.9322 24 1 0.9418 0.5596 -5.0351 25 6 1.8914 -1.0653 -6.0601 26 7 2.5981 -2.1686 -5.9346 27 14 1.3856 -0.4681 -7.7563 28 1 0.6030 0.7872 -7.6260 29 1 2.5990 -0.2118 -8.5731 30 1 0.5532 -1.5045 -8.4182 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5150 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7638 -0.1578 2.1389 35 1 1.6034 -1.7206 1.2995 36 1 6.2341 1.3293 2.9029 37 1 8.6525 0.9428 2.8505 38 1 5.5746 -2.6306 1.3905 39 1 8.0973 -3.6334 0.2855 40 1 8.4429 -4.0150 2.0049 41 1 10.0212 -2.2746 0.0745 42 1 10.6231 -3.2991 1.4171 43 1 3.8377 -2.4817 -0.0866 44 1 5.1896 -1.3245 0.0138 45 1 3.9334 -1.1897 -2.1670 46 1 3.9158 0.3389 -1.2547 47 1 0.4169 0.0348 -2.4438 48 1 1.9188 0.9831 -2.5578 49 1 2.4141 -1.5962 -3.5963 50 1 2.8565 -2.6713 -6.7228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185181358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = -49.286186 kcal Electronic energy + Delta-G solvation = -30359.524345 eV Core-core repulsion = 26351.277745 eV Total energy + Delta-G solvation = -4008.246600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.28263 -41.35418 -39.39073 -38.06368 -36.58690 -35.07052 -33.73657 -33.47180 -32.02321 -31.51577 -30.23981 -28.41191 -27.70212 -25.79302 -24.87350 -24.04590 -23.42626 -22.95195 -22.58111 -21.15262 -20.27074 -19.14998 -18.58446 -18.17249 -17.83083 -17.26837 -16.92682 -16.69191 -16.18618 -15.87039 -15.58429 -15.49514 -15.25863 -15.14908 -14.71905 -14.40614 -14.38174 -14.26610 -14.08337 -13.89465 -13.83302 -13.60615 -13.42252 -13.10971 -12.94107 -12.90680 -12.79029 -12.68606 -12.65116 -12.14437 -11.98639 -11.89574 -11.88968 -11.78774 -11.63400 -11.49611 -11.17994 -10.99797 -10.86031 -9.97259 -9.72761 -9.21207 -8.94761 -7.93684 -5.20801 -0.15832 0.21409 1.48072 1.48504 1.57409 1.58205 1.89878 2.25748 2.56986 2.60938 3.30121 3.40001 3.45985 3.62598 3.70279 3.74889 3.81784 3.87677 4.00262 4.12186 4.17503 4.21380 4.24266 4.31381 4.39809 4.44685 4.52537 4.61364 4.62677 4.68072 4.75030 4.79682 4.82219 4.85145 4.88545 4.94408 4.99558 5.05470 5.10700 5.12649 5.17692 5.22484 5.24223 5.32501 5.36615 5.42165 5.48991 5.53662 5.60708 6.06069 6.29474 6.30489 7.02377 7.36524 8.12691 8.37358 9.29801 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.002817 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.205017 B = 9938.977454 C =11998.041722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.062 0.938 4 C 0.120 3.880 5 N -0.600 5.600 6 C 0.565 3.435 7 O -0.578 6.578 8 C -0.175 4.175 9 C -0.038 4.038 10 C -0.149 4.149 11 C 0.118 3.882 12 C -0.186 4.186 13 C -0.036 4.036 14 C -0.107 4.107 15 C 0.044 3.956 16 O -0.318 6.318 17 C 0.106 3.894 18 C -0.120 4.120 19 C -0.078 4.078 20 H 0.073 0.927 21 C 0.157 3.843 22 N -0.741 5.741 23 C -0.243 4.243 24 H 0.070 0.930 25 C -0.072 4.072 26 N -0.965 5.965 27 Si 0.968 3.032 28 H -0.270 1.270 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.027 0.973 48 H 0.008 0.992 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.396 -2.226 18.733 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.356 3.644 7 O -0.460 6.460 8 C -0.178 4.178 9 C -0.057 4.057 10 C -0.167 4.167 11 C 0.071 3.929 12 C -0.187 4.187 13 C -0.055 4.055 14 C -0.144 4.144 15 C -0.030 4.030 16 O -0.231 6.231 17 C -0.015 4.015 18 C -0.158 4.158 19 C -0.097 4.097 20 H 0.091 0.909 21 C 0.030 3.970 22 N -0.384 5.384 23 C -0.375 4.375 24 H 0.088 0.912 25 C -0.264 4.264 26 N -0.616 5.616 27 Si 0.798 3.202 28 H -0.195 1.195 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.243 -1.728 19.196 22.313 hybrid contribution -0.190 0.068 -1.320 1.335 sum 11.052 -1.660 17.877 21.083 Atomic orbital electron populations 1.21796 0.93280 1.02730 1.02311 1.21350 0.96955 0.99107 0.93307 0.91934 1.21733 0.78366 1.01670 0.98445 1.48097 1.07196 1.60062 1.17709 1.18444 0.86798 0.77450 0.81731 1.90739 1.75702 1.43409 1.36103 1.19675 0.92268 0.97260 1.08633 1.20962 0.91618 0.98774 0.94321 1.20357 0.94962 0.95419 1.06012 1.20071 0.84216 0.93820 0.94762 1.21002 0.93836 0.97274 1.06610 1.20602 0.94051 0.95987 0.94819 1.21929 0.92331 0.95542 1.04615 1.24199 0.98799 0.85729 0.94238 1.86787 1.23640 1.49208 1.63514 1.22175 0.99222 0.97704 0.82441 1.21824 0.95564 1.00699 0.97728 1.21222 0.95091 0.99836 0.93520 0.90877 1.20881 0.96794 0.93494 0.85806 1.42545 1.65203 1.29139 1.01505 1.19620 1.26668 1.05969 0.85262 0.91202 1.25463 1.01695 0.98040 1.01208 1.69790 1.44288 1.18520 1.29013 0.85150 0.77130 0.77528 0.80424 1.19460 1.22032 1.21975 0.91249 0.92553 0.91792 0.89580 0.89655 0.84138 0.83199 0.83425 0.87019 0.87627 0.89403 0.84800 0.89206 0.88136 0.91296 0.92876 0.95507 0.97453 0.79105 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.82 71.98 0.63 -2.62 16 2 C -0.09 -2.21 2.42 -10.71 -0.03 -2.24 16 3 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 4 C 0.12 2.82 5.72 86.37 0.49 3.31 16 5 N -0.60 -14.66 2.98 -822.47 -2.45 -17.11 16 6 C 0.57 15.50 7.31 86.72 0.63 16.14 16 7 O -0.58 -19.52 16.36 -3.95 -0.06 -19.58 16 8 C -0.18 -4.10 5.10 -20.06 -0.10 -4.20 16 9 C -0.04 -0.83 9.62 22.45 0.22 -0.62 16 10 C -0.15 -2.93 10.05 22.41 0.23 -2.70 16 11 C 0.12 2.34 7.04 22.82 0.16 2.50 16 12 C -0.19 -3.32 6.26 -19.54 -0.12 -3.44 16 13 C -0.04 -0.70 7.38 22.43 0.17 -0.53 16 14 C -0.11 -1.19 7.12 30.74 0.22 -0.97 16 15 C 0.04 0.48 8.00 72.56 0.58 1.06 16 16 O -0.32 -5.85 11.09 -93.56 -1.04 -6.89 16 17 C 0.11 2.38 4.91 86.36 0.42 2.80 16 18 C -0.12 -3.46 5.25 30.67 0.16 -3.30 16 19 C -0.08 -2.33 1.73 -10.77 -0.02 -2.35 16 20 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 21 C 0.16 6.10 5.41 86.38 0.47 6.57 16 22 N -0.74 -36.54 5.32 -343.45 -1.83 -38.37 16 23 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 24 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 25 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 26 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 27 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 30 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.42 6.30 -2.39 -0.02 1.40 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 2.17 7.00 -2.39 -0.02 2.15 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.15 2.35 6.68 -2.91 -0.02 2.33 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 44 H 0.10 2.07 4.80 -2.38 -0.01 2.06 16 45 H 0.07 2.30 7.15 -2.39 -0.02 2.28 16 46 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.03 1.05 6.14 -2.39 -0.01 1.04 16 48 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.38 19.34 6.84 -92.70 -0.63 18.70 16 50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.50 392.15 2.67 -67.83 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.32 Total: 30.38 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 5.42 Total: -6.78 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.99 Total: -112.62 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.10 Total: -26.47 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.50 2.67 -67.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185181358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.547 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds