Wall clock time and date at job start Wed Apr 1 2020 03:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99946 * 2 1 4 4 C 1.52998 * 109.46753 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46894 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47179 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47179 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47039 * 179.97438 * 7 6 5 9 9 C 1.48535 * 110.99928 * 170.00070 * 8 7 6 10 10 C 1.54935 * 103.22825 * 159.71977 * 9 8 7 11 11 H 1.09006 * 110.72342 * 81.12011 * 10 9 8 12 12 C 1.52997 * 110.72566 * 204.22679 * 10 9 8 13 13 C 1.54598 * 103.08349 * 322.67491 * 10 9 8 14 14 H 1.08998 * 110.30748 * 262.95754 * 13 10 9 15 15 N 1.46497 * 110.30989 * 140.78155 * 13 10 9 16 16 C 1.34776 * 119.99727 * 155.00034 * 15 13 10 17 17 O 1.21284 * 120.00127 * 0.02562 * 16 15 13 18 18 C 1.50707 * 120.00165 * 180.02562 * 16 15 13 19 19 S 1.80995 * 109.47254 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99935 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00089 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99937 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99475 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00023 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.47202 * 89.99843 * 24 22 20 26 26 H 1.48502 * 109.47246 * 209.99988 * 24 22 20 27 27 H 1.48499 * 109.47392 * 330.00077 * 24 22 20 28 28 C 1.47901 * 110.99932 * 287.39342 * 8 7 6 29 29 H 1.08998 * 109.46805 * 60.00047 * 1 2 3 30 30 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47245 * 299.99953 * 1 2 3 32 32 H 1.09000 * 109.47162 * 59.99889 * 3 2 1 33 33 H 1.09004 * 109.46873 * 299.99746 * 3 2 1 34 34 H 1.09000 * 109.47271 * 60.00086 * 4 3 2 35 35 H 1.08995 * 109.47400 * 299.99402 * 4 3 2 36 36 H 1.09000 * 109.47069 * 59.99990 * 5 4 3 37 37 H 1.09004 * 109.46825 * 299.99933 * 5 4 3 38 38 H 1.09000 * 109.47330 * 59.99903 * 6 5 4 39 39 H 1.09004 * 109.46986 * 299.99588 * 6 5 4 40 40 H 1.09000 * 109.47069 * 59.99743 * 7 6 5 41 41 H 1.08995 * 109.46632 * 299.99653 * 7 6 5 42 42 H 1.08993 * 110.66575 * 41.28315 * 9 8 7 43 43 H 1.09003 * 110.80670 * 278.21873 * 9 8 7 44 44 H 1.09002 * 109.47153 * 56.14579 * 12 10 9 45 45 H 1.09001 * 109.46832 * 296.14770 * 12 10 9 46 46 H 1.09004 * 109.47261 * 176.14751 * 12 10 9 47 47 H 0.96992 * 120.00684 * 335.00277 * 15 13 10 48 48 H 1.09004 * 109.46728 * 299.99978 * 18 16 15 49 49 H 1.08996 * 109.46613 * 59.99624 * 18 16 15 50 50 H 0.97005 * 119.99573 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.92152 * 333.51373 * 28 8 7 52 52 H 1.09002 * 109.91988 * 94.60736 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4615 0.0000 7 6 6.3054 3.8592 -0.0013 8 7 7.7698 3.7432 -0.0007 9 6 8.4083 5.0623 -0.2427 10 6 9.8449 4.8662 0.3034 11 1 10.4699 4.3560 -0.4296 12 6 10.4625 6.2095 0.6973 13 6 9.6274 3.9777 1.5497 14 1 9.5928 4.5910 2.4502 15 7 10.6935 2.9785 1.6543 16 6 11.0079 2.4515 2.8543 17 8 10.4078 2.8042 3.8475 18 6 12.1051 1.4240 2.9620 19 16 12.2871 0.9146 4.6892 20 6 13.5956 -0.2543 4.5271 21 1 14.0238 -0.4543 3.5561 22 6 14.0760 -0.9181 5.6475 23 7 15.0539 -1.7908 5.5264 24 14 13.3349 -0.5727 7.3270 25 1 12.2020 -1.5020 7.5688 26 1 14.3690 -0.7697 8.3745 27 1 12.8443 0.8282 7.3731 28 6 8.2651 3.2913 1.3176 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 3.8575 0.6435 -0.8891 35 1 3.8568 0.6439 0.8909 36 1 3.8359 3.1238 0.8895 37 1 3.8365 3.1226 -0.8905 38 1 6.0046 1.9202 -0.8897 39 1 6.0047 1.9210 0.8903 40 1 5.9838 4.4010 0.8882 41 1 5.9837 4.3992 -0.8917 42 1 7.8909 5.8471 0.3089 43 1 8.4298 5.2925 -1.3079 44 1 9.8169 6.7081 1.4203 45 1 10.5667 6.8352 -0.1891 46 1 11.4439 6.0420 1.1412 47 1 11.1733 2.6961 0.8600 48 1 11.8520 0.5570 2.3518 49 1 13.0422 1.8550 2.6099 50 1 15.3893 -2.2550 6.3094 51 1 7.5623 3.5828 2.0983 52 1 8.3899 2.2084 1.3162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206096039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:22 Heat of formation + Delta-G solvation = -125.509202 kcal Electronic energy + Delta-G solvation = -27225.740204 eV Core-core repulsion = 23349.632277 eV Total energy + Delta-G solvation = -3876.107927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21708 -39.71055 -38.98870 -36.83746 -35.23703 -34.67433 -33.78644 -31.44080 -31.11083 -28.94805 -27.88466 -27.81425 -26.66845 -25.13142 -23.32396 -22.24278 -22.07708 -21.31618 -21.07784 -19.81465 -17.97177 -17.77704 -17.34361 -17.30240 -17.10111 -16.81820 -16.35430 -16.20106 -16.02321 -15.92461 -15.50023 -15.14709 -14.92636 -14.71782 -14.27358 -14.19772 -13.99236 -13.71909 -13.57006 -13.35384 -13.31505 -13.20528 -13.02490 -12.93920 -12.77337 -12.64198 -12.35423 -12.23940 -12.12404 -11.93763 -11.87011 -11.84389 -11.69473 -11.53903 -11.41661 -11.17562 -10.98695 -10.64212 -10.54173 -10.14665 -9.44019 -8.99835 -8.51823 -6.22527 0.98330 1.30901 1.46109 1.54120 1.55376 2.20841 2.25739 2.71165 2.74831 2.86376 3.00828 3.45443 3.60564 3.86343 3.91921 3.98918 4.01890 4.09046 4.17727 4.21820 4.23686 4.32699 4.40306 4.46646 4.47923 4.48659 4.52058 4.57280 4.60043 4.65009 4.69950 4.78421 4.81857 4.84285 4.85907 4.88226 4.93531 5.01570 5.05116 5.15874 5.19912 5.31974 5.35795 5.43426 5.52378 5.70510 5.84148 6.06618 6.11251 6.22824 6.46292 6.93321 7.18238 8.60575 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008419 B = 0.002065 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.176932 B =13556.822550 C =16306.598022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.058 3.942 4 C -0.118 4.118 5 C -0.105 4.105 6 C -0.110 4.110 7 C 0.048 3.952 8 N -0.521 5.521 9 C 0.043 3.957 10 C -0.091 4.091 11 H 0.100 0.900 12 C -0.141 4.141 13 C 0.138 3.862 14 H 0.077 0.923 15 N -0.702 5.702 16 C 0.537 3.463 17 O -0.562 6.562 18 C -0.112 4.112 19 S -0.175 6.175 20 C -0.529 4.529 21 H 0.062 0.938 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.237 1.237 28 C 0.032 3.968 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.416 0.584 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.277 0.723 51 H 0.041 0.959 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.664 16.311 -18.275 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.344 6.344 3 C -0.018 4.018 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.148 4.148 7 C -0.080 4.080 8 N -0.245 5.245 9 C -0.084 4.084 10 C -0.111 4.111 11 H 0.118 0.882 12 C -0.199 4.199 13 C 0.032 3.968 14 H 0.095 0.905 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.440 6.440 18 C -0.262 4.262 19 S 0.052 5.948 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.161 1.161 28 C -0.098 4.098 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.254 0.746 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.086 0.914 51 H 0.059 0.941 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.298 16.239 -16.984 34.527 hybrid contribution 0.670 -0.471 0.166 0.836 sum -24.628 15.767 -16.818 33.734 Atomic orbital electron populations 1.22912 0.79576 1.03696 1.00893 1.87848 1.21511 1.29440 1.95626 1.22661 0.93943 0.84150 1.01015 1.21502 0.93265 0.98254 1.02579 1.21381 0.94152 0.95713 1.03091 1.21471 0.94769 0.96664 1.01945 1.22343 0.86659 0.97339 1.01645 1.64772 1.07091 1.25243 1.27391 1.23337 0.92602 0.89948 1.02560 1.22345 0.97519 0.96155 0.95037 0.88154 1.21764 1.00468 0.95390 1.02267 1.22001 0.85978 0.89037 0.99778 0.90455 1.45805 1.37993 1.42826 1.08872 1.19973 0.82963 0.81218 0.83577 1.90684 1.53873 1.61739 1.37738 1.23273 1.01287 1.01228 1.00452 1.84691 1.47537 1.53302 1.09299 1.22466 1.20821 1.26439 0.97986 0.91974 1.25562 0.94372 0.93452 1.02594 1.70018 1.26799 1.26288 1.32304 0.85869 0.79348 0.81532 0.79627 1.18769 1.18265 1.16080 1.23264 0.95460 1.00470 0.90581 0.92885 0.88917 0.93305 0.92744 0.91958 0.91549 0.92636 0.91527 0.90096 0.91425 0.93768 0.94600 0.88916 0.92781 0.87749 0.92689 0.90117 0.92995 0.74604 0.87014 0.86753 0.91371 0.94056 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.77 10.70 -148.98 -1.59 -9.37 16 3 C 0.06 0.80 5.94 71.98 0.43 1.23 16 4 C -0.12 -1.74 5.58 30.60 0.17 -1.57 16 5 C -0.11 -1.22 5.21 30.59 0.16 -1.07 16 6 C -0.11 -1.66 5.30 30.59 0.16 -1.50 16 7 C 0.05 0.67 4.79 86.30 0.41 1.08 16 8 N -0.52 -8.68 5.25 -882.38 -4.63 -13.31 16 9 C 0.04 0.54 5.97 86.65 0.52 1.06 16 10 C -0.09 -1.29 3.36 -9.59 -0.03 -1.32 16 11 H 0.10 1.27 7.75 -2.38 -0.02 1.25 16 12 C -0.14 -1.80 9.14 71.98 0.66 -1.15 16 13 C 0.14 2.97 2.93 45.98 0.13 3.10 16 14 H 0.08 2.01 7.27 -2.39 -0.02 2.00 16 15 N -0.70 -16.88 5.03 -437.87 -2.20 -19.08 16 16 C 0.54 18.50 7.85 87.66 0.69 19.19 16 17 O -0.56 -24.02 15.51 -3.04 -0.05 -24.07 16 18 C -0.11 -4.23 6.16 71.24 0.44 -3.79 16 19 S -0.17 -8.90 18.55 -56.49 -1.05 -9.95 16 20 C -0.53 -31.08 10.04 67.96 0.68 -30.40 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.70 5.50 84.86 0.47 3.17 16 23 N -0.92 -56.12 13.97 21.65 0.30 -55.82 16 24 Si 0.91 45.39 27.74 68.60 1.90 47.29 16 25 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 28 C 0.03 0.69 5.73 86.55 0.50 1.19 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.84 7.62 -2.38 -0.02 0.83 16 40 H 0.04 0.52 7.73 -2.39 -0.02 0.50 16 41 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 42 H 0.05 0.64 7.92 -2.39 -0.02 0.62 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 47 H 0.42 7.57 8.38 -92.71 -0.78 6.79 16 48 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 49 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 50 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 51 H 0.04 0.98 7.52 -2.39 -0.02 0.96 16 52 H 0.07 1.71 7.94 -2.39 -0.02 1.69 16 Total: -1.00 -74.62 429.04 -0.63 -75.24 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.05 Total: 18.31 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 6.63 Total: -9.24 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -6.53 Total: -88.21 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.64 Total: -33.44 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -74.62 -0.63 -75.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206096039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.265 kcal (2) G-P(sol) polarization free energy of solvation -74.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds