Wall clock time and date at job start Wed Apr 1 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.88245 * 2 1 4 4 C 1.54906 * 111.00474 * 236.11798 * 2 1 3 5 5 N 1.47419 * 104.83321 * 204.87850 * 4 2 1 6 6 C 1.36936 * 125.65059 * 204.09063 * 5 4 2 7 7 H 1.07994 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99980 * 179.72259 * 6 5 4 9 9 N 1.31615 * 119.99805 * 0.28143 * 8 6 5 10 10 Si 1.86801 * 119.99791 * 180.27852 * 8 6 5 11 11 H 1.48497 * 109.47109 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47101 * 120.00445 * 10 8 6 13 13 H 1.48504 * 109.46718 * 240.00116 * 10 8 6 14 14 C 1.47026 * 108.70069 * 24.35775 * 5 4 2 15 15 C 1.54328 * 107.26601 * 358.58387 * 14 5 4 16 16 H 1.09005 * 110.66489 * 96.52690 * 15 14 5 17 17 N 1.46498 * 110.85148 * 219.67242 * 15 14 5 18 18 C 1.34781 * 119.99957 * 268.69462 * 17 15 14 19 19 O 1.21277 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.50697 * 119.99754 * 179.97438 * 18 17 15 21 21 O 1.42905 * 109.47199 * 179.97438 * 20 18 17 22 22 C 1.42893 * 114.00338 * 180.02562 * 21 20 18 23 23 C 1.50699 * 109.47527 * 180.02562 * 22 21 20 24 24 C 1.32562 * 120.00114 * 136.23917 * 23 22 21 25 25 C 1.47811 * 120.00555 * 8.03767 * 24 23 22 26 26 C 1.39526 * 120.14387 * 215.10250 * 25 24 23 27 27 C 1.37977 * 119.85632 * 179.76510 * 26 25 24 28 28 C 1.38345 * 120.14139 * 0.48138 * 27 26 25 29 29 C 1.38345 * 120.28236 * 359.76798 * 28 27 26 30 30 C 1.37972 * 120.14700 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.47162 * 182.42332 * 1 2 3 32 32 H 1.08998 * 109.47316 * 302.42891 * 1 2 3 33 33 H 1.08998 * 109.46836 * 62.42981 * 1 2 3 34 34 H 1.09007 * 110.36824 * 86.04256 * 4 2 1 35 35 H 1.09000 * 110.36600 * 323.71909 * 4 2 1 36 36 H 0.97006 * 119.99773 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.88201 * 118.13169 * 14 5 4 38 38 H 1.09002 * 109.88246 * 239.29262 * 14 5 4 39 39 H 0.96993 * 119.99847 * 88.69069 * 17 15 14 40 40 H 1.08997 * 109.47424 * 299.99672 * 20 18 17 41 41 H 1.09001 * 109.47332 * 60.00260 * 20 18 17 42 42 H 1.09007 * 109.46850 * 300.00269 * 22 21 20 43 43 H 1.09001 * 109.47562 * 59.99700 * 22 21 20 44 44 H 1.08001 * 119.99385 * 316.24340 * 23 22 21 45 45 H 1.08004 * 120.00008 * 188.03523 * 24 23 22 46 46 H 1.07998 * 120.07303 * 359.97288 * 26 25 24 47 47 H 1.08004 * 119.93184 * 180.23061 * 27 26 25 48 48 H 1.07994 * 119.85962 * 179.74425 * 28 27 26 49 49 H 1.08001 * 119.92399 * 179.97438 * 29 28 27 50 50 H 1.08000 * 120.07454 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7741 6 6 4.4643 -1.5650 -1.6083 7 1 4.3332 -1.5100 -2.6789 8 6 5.6857 -1.9571 -1.0778 9 7 5.8455 -2.0237 0.2269 10 14 7.1023 -2.3903 -2.2158 11 1 6.6681 -2.2365 -3.6275 12 1 8.2475 -1.4836 -1.9479 13 1 7.5174 -3.7959 -1.9764 14 6 3.4666 -1.2785 0.6952 15 6 2.0870 -0.8078 1.2019 16 1 1.4464 -1.6617 1.4228 17 7 2.2294 0.0496 2.3813 18 6 2.2018 -0.4917 3.6153 19 8 2.0596 -1.6887 3.7494 20 6 2.3489 0.3902 4.8283 21 8 2.2871 -0.4110 6.0101 22 6 2.4164 0.3322 7.2236 23 6 2.3380 -0.6075 8.3991 24 6 3.1861 -0.4773 9.4096 25 6 4.0893 0.6911 9.4707 26 6 5.3779 0.5544 9.9878 27 6 6.2178 1.6480 10.0376 28 6 5.7811 2.8803 9.5852 29 6 4.5028 3.0237 9.0761 30 6 3.6546 1.9370 9.0169 31 1 -0.3633 -1.0268 0.0435 32 1 -0.3634 0.5511 0.8674 33 1 -0.3633 0.4756 -0.9110 34 1 2.1555 -0.1714 -2.0839 35 1 1.4523 -1.6702 -1.4026 36 1 6.6989 -2.2981 0.5976 37 1 3.6616 -2.2955 1.0357 38 1 4.2430 -0.6072 1.0621 39 1 2.3435 1.0068 2.2740 40 1 3.3083 0.9059 4.7885 41 1 1.5425 1.1234 4.8444 42 1 3.3773 0.8469 7.2338 43 1 1.6115 1.0643 7.2890 44 1 1.5908 -1.3871 8.4182 45 1 3.2171 -1.2250 10.1883 46 1 5.7184 -0.4062 10.3453 47 1 7.2168 1.5426 10.4342 48 1 6.4409 3.7341 9.6301 49 1 4.1678 3.9885 8.7250 50 1 2.6567 2.0504 8.6196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207686984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:16 Heat of formation + Delta-G solvation = -5.734825 kcal Electronic energy + Delta-G solvation = -29120.763098 eV Core-core repulsion = 25114.405027 eV Total energy + Delta-G solvation = -4006.358071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.83015 -39.50418 -38.03123 -37.11809 -34.86682 -33.86097 -32.61558 -31.35729 -30.35890 -30.23282 -28.90006 -27.21505 -25.94926 -25.52268 -23.49439 -22.81289 -22.58003 -20.79242 -20.00761 -19.77259 -19.39549 -17.44798 -16.95732 -16.60451 -16.56284 -16.38947 -15.85744 -15.61979 -15.06029 -14.87199 -14.63742 -14.38314 -13.79872 -13.76788 -13.65142 -13.40397 -13.15422 -12.90518 -12.76982 -12.72815 -12.41157 -12.33213 -11.87887 -11.82453 -11.68661 -11.36974 -11.33056 -11.01358 -10.96709 -10.77779 -10.59988 -10.36037 -10.32118 -9.97177 -9.90282 -9.71475 -9.68652 -9.38647 -9.16823 -8.60606 -8.54129 -8.44303 -6.81251 -5.66820 -3.02228 0.70158 1.10614 2.01485 2.96050 3.09451 3.42073 3.47084 3.50164 3.55676 4.08712 4.45840 4.52343 4.56531 4.66704 4.79793 4.80777 4.94671 5.01885 5.06571 5.10011 5.13706 5.16582 5.23365 5.26020 5.32861 5.45939 5.50303 5.57009 5.64866 5.75115 5.77662 6.00364 6.00985 6.03530 6.07722 6.16517 6.21592 6.22154 6.30205 6.36070 6.44896 6.50548 6.63837 6.69042 6.78677 6.91822 7.00439 7.59342 7.61621 7.86981 7.92715 8.27988 8.61697 9.23960 9.84744 10.49644 11.43773 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.002230 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.857719 B =12552.029003 C =14148.754919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.172 3.828 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.518 6.518 20 C 0.046 3.954 21 O -0.358 6.358 22 C 0.078 3.922 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.059 4.059 26 C -0.107 4.107 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.121 4.121 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.396 0.604 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 12.638 19.158 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.364 5.364 18 C 0.297 3.703 19 O -0.392 6.392 20 C -0.034 4.034 21 O -0.276 6.276 22 C 0.002 3.998 23 C -0.147 4.147 24 C -0.136 4.136 25 C -0.059 4.059 26 C -0.125 4.125 27 C -0.138 4.138 28 C -0.138 4.138 29 C -0.139 4.139 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.229 0.771 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.477 11.467 19.272 23.639 hybrid contribution 1.013 0.509 -0.547 1.259 sum -6.464 11.976 18.725 23.148 Atomic orbital electron populations 1.21694 0.95052 1.01769 1.00936 1.22615 0.94804 0.99505 0.96425 0.90467 1.21583 0.87632 0.95061 0.94312 1.44425 1.07863 1.79211 1.01814 1.19090 0.89142 1.38644 0.88935 0.90275 1.24840 0.97879 1.01774 0.96012 1.69987 1.23984 1.53361 1.09191 0.86048 0.82408 0.77768 0.79546 1.20514 1.21807 1.21742 1.21485 0.90132 1.00386 0.83340 1.22505 1.00347 0.92763 0.82674 0.89304 1.45788 1.74355 1.10957 1.05287 1.20063 0.77351 0.88912 0.84019 1.90735 1.47337 1.15140 1.86021 1.22212 1.02263 0.93450 0.85473 1.88038 1.94397 1.33061 1.12111 1.22006 1.00681 0.93485 0.83637 1.23045 0.98325 1.00063 0.93242 1.21662 0.95126 0.96642 1.00153 1.19132 0.94299 0.93475 0.99005 1.21301 0.93155 0.98919 0.99111 1.21132 0.99757 0.92908 0.99972 1.21237 0.96173 0.97613 0.98806 1.21107 0.94246 0.98663 0.99898 1.21487 1.00172 0.92232 0.99581 0.92612 0.93177 0.92756 0.93961 0.96046 0.93779 0.93478 0.93077 0.77100 0.90277 0.90637 0.91306 0.92297 0.85472 0.85369 0.85737 0.85903 0.86055 0.85864 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.30 37.16 0.35 -1.47 16 2 C -0.11 -1.89 3.27 -88.47 -0.29 -2.17 16 3 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 4 C 0.14 2.87 6.70 -2.53 -0.02 2.86 16 5 N -0.61 -15.69 3.39 -170.07 -0.58 -16.27 16 6 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.83 10.31 55.49 0.57 -27.26 16 10 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.17 4.34 5.13 -3.06 -0.02 4.32 16 15 C 0.12 2.36 2.78 -66.10 -0.18 2.17 16 16 H 0.09 1.85 7.42 -51.93 -0.39 1.47 16 17 N -0.71 -11.42 5.11 -52.03 -0.27 -11.68 16 18 C 0.51 8.91 7.91 -10.98 -0.09 8.82 16 19 O -0.52 -11.66 16.14 -14.35 -0.23 -11.89 16 20 C 0.05 0.59 6.42 36.00 0.23 0.82 16 21 O -0.36 -5.29 9.86 -55.14 -0.54 -5.83 16 22 C 0.08 0.83 4.53 36.00 0.16 0.99 16 23 C -0.13 -1.30 9.84 -36.22 -0.36 -1.66 16 24 C -0.12 -1.08 9.81 -37.58 -0.37 -1.44 16 25 C -0.06 -0.56 5.17 -105.02 -0.54 -1.10 16 26 C -0.11 -0.96 9.79 -39.20 -0.38 -1.34 16 27 C -0.12 -0.99 10.03 -39.64 -0.40 -1.38 16 28 C -0.12 -0.95 10.04 -39.50 -0.40 -1.35 16 29 C -0.12 -0.97 10.03 -39.64 -0.40 -1.36 16 30 C -0.12 -1.01 7.42 -39.19 -0.29 -1.30 16 31 H 0.05 0.77 8.11 -51.93 -0.42 0.34 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 1.39 7.53 -51.92 -0.39 1.00 16 38 H 0.05 1.41 7.24 -51.93 -0.38 1.03 16 39 H 0.40 4.95 8.56 -40.82 -0.35 4.60 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.73 5.32 -51.93 -0.28 0.45 16 43 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.13 0.92 5.83 -52.49 -0.31 0.61 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -36.17 408.38 -11.08 -47.25 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.93 Total: 3.66 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.24 Total: -1.60 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.27 Total: -55.21 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.78 Total: -17.72 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.17 -11.08 -47.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207686984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.514 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds