Wall clock time and date at job start Wed Apr 1 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.88977 * 2 1 4 4 C 1.54919 * 111.00290 * 236.12152 * 2 1 3 5 5 N 1.47426 * 104.83230 * 204.87998 * 4 2 1 6 6 C 1.36931 * 125.64564 * 204.09126 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72206 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48498 * 109.47174 * 90.00121 * 10 8 6 12 12 H 1.48501 * 109.47062 * 210.00072 * 10 8 6 13 13 H 1.48504 * 109.46913 * 329.99871 * 10 8 6 14 14 C 1.47021 * 108.70417 * 24.35268 * 5 4 2 15 15 C 1.54339 * 107.26633 * 358.58904 * 14 5 4 16 16 H 1.08994 * 110.67130 * 96.51663 * 15 14 5 17 17 N 1.46498 * 110.84969 * 219.67238 * 15 14 5 18 18 C 1.34781 * 119.99967 * 268.68921 * 17 15 14 19 19 O 1.21276 * 119.99691 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00034 * 179.97438 * 18 17 15 21 21 O 1.42891 * 109.47223 * 179.97438 * 20 18 17 22 22 C 1.35901 * 117.00497 * 179.97438 * 21 20 18 23 23 C 1.38752 * 120.08949 * 359.73380 * 22 21 20 24 24 C 1.38004 * 119.87946 * 179.73874 * 23 22 21 25 25 C 1.38549 * 120.28888 * 0.51757 * 24 23 22 26 26 C 1.38257 * 119.93533 * 359.75220 * 25 24 23 27 27 C 1.38413 * 119.90668 * 359.97438 * 26 25 24 28 28 C 1.51380 * 109.75493 * 179.97438 * 26 25 24 29 29 C 1.54346 * 105.16841 * 17.20236 * 28 26 25 30 30 C 1.51388 * 130.32086 * 179.73633 * 25 24 23 31 31 H 1.08996 * 109.47165 * 182.42602 * 1 2 3 32 32 H 1.09002 * 109.46767 * 302.42766 * 1 2 3 33 33 H 1.09002 * 109.47184 * 62.42047 * 1 2 3 34 34 H 1.09003 * 110.36295 * 86.03825 * 4 2 1 35 35 H 1.09001 * 110.36644 * 323.71694 * 4 2 1 36 36 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.88280 * 118.13142 * 14 5 4 38 38 H 1.09001 * 109.88287 * 239.29807 * 14 5 4 39 39 H 0.97003 * 120.00183 * 88.69064 * 17 15 14 40 40 H 1.09002 * 109.47461 * 300.00540 * 20 18 17 41 41 H 1.09011 * 109.46659 * 60.00162 * 20 18 17 42 42 H 1.08000 * 120.05801 * 359.96964 * 23 22 21 43 43 H 1.07999 * 119.85578 * 180.29623 * 24 23 22 44 44 H 1.08003 * 119.91312 * 180.02562 * 27 26 25 45 45 H 1.08997 * 110.30219 * 136.12498 * 28 26 25 46 46 H 1.08998 * 110.30638 * 258.18665 * 28 26 25 47 47 H 1.08998 * 110.81892 * 91.85747 * 29 28 26 48 48 H 1.08997 * 110.82285 * 215.40193 * 29 28 26 49 49 H 1.09002 * 110.30265 * 43.89408 * 30 25 24 50 50 H 1.09003 * 110.30178 * 281.74373 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2007 5 7 3.4275 -1.2421 -0.7743 6 6 4.4641 -1.5650 -1.6086 7 1 4.3331 -1.5100 -2.6792 8 6 5.6856 -1.9572 -1.0782 9 7 5.8455 -2.0238 0.2265 10 14 7.1022 -2.3904 -2.2162 11 1 7.8991 -1.1702 -2.5012 12 1 7.9678 -3.4059 -1.5646 13 1 6.5657 -2.9395 -3.4874 14 6 3.4667 -1.2786 0.6949 15 6 2.0870 -0.8079 1.2019 16 1 1.4464 -1.6616 1.4226 17 7 2.2296 0.0495 2.3812 18 6 2.2020 -0.4919 3.6152 19 8 2.0597 -1.6888 3.7492 20 6 2.3492 0.3900 4.8283 21 8 2.2874 -0.4112 6.0099 22 6 2.4052 0.2344 7.2000 23 6 2.5824 1.6102 7.2306 24 6 2.6961 2.2620 8.4416 25 6 2.6449 1.5472 9.6274 26 6 2.4740 0.1755 9.5993 27 6 2.3540 -0.4803 8.3863 28 6 2.4521 -0.3664 11.0126 29 6 2.1886 0.8603 11.9115 30 6 2.7490 2.0203 11.0617 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5511 0.8675 33 1 -0.3633 0.4758 -0.9109 34 1 2.1553 -0.1713 -2.0840 35 1 1.4522 -1.6702 -1.4028 36 1 6.6989 -2.2982 0.5972 37 1 3.6617 -2.2955 1.0354 38 1 4.2432 -0.6073 1.0619 39 1 2.3437 1.0068 2.2740 40 1 3.3086 0.9058 4.7884 41 1 1.5428 1.1233 4.8444 42 1 2.6274 2.1704 6.3083 43 1 2.8292 3.3335 8.4651 44 1 2.2201 -1.5517 8.3643 45 1 1.6509 -1.0968 11.1252 46 1 3.4127 -0.8185 11.2594 47 1 1.1207 0.9897 12.0872 48 1 2.7296 0.7736 12.8537 49 1 2.1507 2.9197 11.2077 50 1 3.7901 2.2113 11.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210809340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:13 Heat of formation + Delta-G solvation = -25.569341 kcal Electronic energy + Delta-G solvation = -29300.276384 eV Core-core repulsion = 25293.058224 eV Total energy + Delta-G solvation = -4007.218160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.71938 -39.68578 -38.57127 -37.35628 -34.97650 -33.94590 -32.68550 -31.69983 -30.38809 -29.44768 -28.65314 -27.62557 -26.60027 -25.60488 -23.62267 -23.04651 -21.37136 -21.07883 -20.53161 -20.02744 -19.59649 -18.01246 -17.12927 -16.85274 -16.35776 -16.05820 -15.86808 -15.73039 -15.21420 -14.94058 -14.67282 -14.11373 -13.86226 -13.68707 -13.60445 -13.19364 -13.16737 -12.81148 -12.74328 -12.73002 -12.47544 -12.21344 -11.96904 -11.78490 -11.72471 -11.51890 -11.48631 -11.36490 -11.02964 -10.87721 -10.78364 -10.73142 -10.63457 -10.41360 -10.01295 -9.95001 -9.71699 -9.52572 -8.99040 -8.63906 -8.52880 -8.17890 -6.84297 -5.69535 -3.04885 1.12051 1.24355 2.59788 2.82655 3.40520 3.45437 3.48201 3.52093 3.71806 4.22524 4.29462 4.49883 4.59558 4.67673 4.74734 4.82445 4.89460 4.98730 5.02569 5.07224 5.10967 5.24224 5.29164 5.38598 5.41321 5.41922 5.48936 5.54366 5.59163 5.64536 5.73480 5.82671 5.94693 5.96158 5.97187 6.08826 6.12675 6.17017 6.18910 6.32128 6.44335 6.46201 6.53793 6.60876 6.70811 6.90644 7.23993 7.53640 7.57178 7.80255 7.84906 8.25006 8.47476 9.21261 9.82012 10.46655 11.41179 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002037 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.432455 B =13743.037347 C =14852.537270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.121 3.879 16 H 0.090 0.910 17 N -0.708 5.708 18 C 0.514 3.486 19 O -0.515 6.515 20 C 0.043 3.957 21 O -0.286 6.286 22 C 0.136 3.864 23 C -0.210 4.210 24 C -0.066 4.066 25 C -0.141 4.141 26 C -0.059 4.059 27 C -0.138 4.138 28 C -0.083 4.083 29 C -0.120 4.120 30 C -0.076 4.076 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.253 0.747 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.397 0.603 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 11.901 19.658 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.046 3.954 15 C 0.017 3.983 16 H 0.108 0.892 17 N -0.360 5.360 18 C 0.298 3.702 19 O -0.389 6.389 20 C -0.036 4.036 21 O -0.198 6.198 22 C 0.090 3.910 23 C -0.229 4.229 24 C -0.085 4.085 25 C -0.142 4.142 26 C -0.059 4.059 27 C -0.157 4.157 28 C -0.120 4.120 29 C -0.158 4.158 30 C -0.113 4.113 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.230 0.770 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.149 0.851 43 H 0.140 0.860 44 H 0.149 0.851 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.167 10.708 19.733 24.646 hybrid contribution 1.024 0.525 -0.823 1.415 sum -9.144 11.233 18.910 23.819 Atomic orbital electron populations 1.21698 0.95001 1.01806 1.00992 1.22623 0.94843 0.99522 0.96352 0.90413 1.21589 0.87623 0.95078 0.94302 1.44402 1.07859 1.79239 1.01747 1.19048 0.89151 1.38762 0.88925 0.90290 1.24840 0.97892 1.01729 0.96030 1.69967 1.24092 1.53342 1.09226 0.86113 0.82304 0.77770 0.79522 1.21644 1.21667 1.20666 1.21489 0.90011 1.00423 0.83437 1.22550 1.00495 0.92747 0.82509 0.89179 1.45746 1.74093 1.11094 1.05101 1.19851 0.77689 0.88758 0.83918 1.90760 1.47289 1.14960 1.85932 1.22518 1.03567 0.93736 0.83810 1.86172 1.87350 1.35018 1.11275 1.18855 0.95804 0.90799 0.85557 1.21159 1.09245 0.93358 0.99134 1.20360 0.97965 0.99497 0.90635 1.20478 1.04409 0.94312 0.94957 1.20309 0.97370 0.94162 0.94081 1.19800 1.06660 1.00521 0.88687 1.21073 1.02685 0.98189 0.90034 1.22293 1.01482 0.94063 0.97946 1.20961 1.01480 0.98518 0.90383 0.92581 0.93171 0.92696 0.93907 0.96001 0.93698 0.93413 0.93047 0.76951 0.88899 0.89255 0.85147 0.85988 0.85139 0.90461 0.89894 0.90940 0.90540 0.90990 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.30 37.16 0.35 -1.43 16 2 C -0.11 -1.84 3.27 -88.46 -0.29 -2.13 16 3 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 4 C 0.14 2.82 6.70 -2.52 -0.02 2.81 16 5 N -0.61 -15.45 3.39 -170.06 -0.58 -16.03 16 6 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.62 10.31 55.49 0.57 -27.05 16 10 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.17 4.26 5.13 -3.06 -0.02 4.24 16 15 C 0.12 2.29 2.78 -66.09 -0.18 2.10 16 16 H 0.09 1.83 7.42 -51.93 -0.39 1.45 16 17 N -0.71 -10.93 5.11 -52.03 -0.27 -11.19 16 18 C 0.51 8.61 7.91 -10.98 -0.09 8.52 16 19 O -0.52 -11.25 16.14 -14.35 -0.23 -11.48 16 20 C 0.04 0.53 5.22 36.00 0.19 0.72 16 21 O -0.29 -4.35 9.67 -39.34 -0.38 -4.73 16 22 C 0.14 1.77 6.68 -39.26 -0.26 1.50 16 23 C -0.21 -2.24 9.04 -39.48 -0.36 -2.60 16 24 C -0.07 -0.64 10.03 -39.55 -0.40 -1.04 16 25 C -0.14 -1.37 6.14 -104.16 -0.64 -2.01 16 26 C -0.06 -0.62 6.13 -104.22 -0.64 -1.26 16 27 C -0.14 -1.70 9.98 -39.39 -0.39 -2.09 16 28 C -0.08 -0.63 6.77 -26.84 -0.18 -0.81 16 29 C -0.12 -0.73 7.08 -25.33 -0.18 -0.91 16 30 C -0.08 -0.53 6.77 -26.85 -0.18 -0.71 16 31 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 1.39 7.53 -51.93 -0.39 1.00 16 38 H 0.05 1.39 7.24 -51.93 -0.38 1.01 16 39 H 0.40 4.69 8.56 -40.82 -0.35 4.34 16 40 H 0.09 0.98 7.65 -51.93 -0.40 0.58 16 41 H 0.09 0.81 7.68 -51.92 -0.40 0.41 16 42 H 0.13 1.10 6.31 -52.49 -0.33 0.77 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -35.30 402.27 -11.46 -46.76 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.08 Total: 2.36 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.54 Total: -2.04 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.27 Total: -54.27 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.61 Total: -16.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.30 -11.46 -46.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210809340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.194 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds