Wall clock time and date at job start Wed Apr 1 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.88977 * 2 1 4 4 C 1.54919 * 111.00290 * 236.12152 * 2 1 3 5 5 N 1.47426 * 104.83230 * 204.87998 * 4 2 1 6 6 C 1.36931 * 125.64564 * 204.09126 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72206 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48498 * 109.47174 * 90.00121 * 10 8 6 12 12 H 1.48501 * 109.47062 * 210.00072 * 10 8 6 13 13 H 1.48504 * 109.46913 * 329.99871 * 10 8 6 14 14 C 1.47021 * 108.70417 * 24.35268 * 5 4 2 15 15 C 1.54339 * 107.26633 * 358.58904 * 14 5 4 16 16 H 1.08994 * 110.67130 * 96.51663 * 15 14 5 17 17 N 1.46498 * 110.84969 * 219.67238 * 15 14 5 18 18 C 1.34781 * 119.99967 * 268.68921 * 17 15 14 19 19 O 1.21276 * 119.99691 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00034 * 179.97438 * 18 17 15 21 21 O 1.42891 * 109.47223 * 179.97438 * 20 18 17 22 22 C 1.35901 * 117.00497 * 179.97438 * 21 20 18 23 23 C 1.38752 * 120.08949 * 359.73380 * 22 21 20 24 24 C 1.38004 * 119.87946 * 179.73874 * 23 22 21 25 25 C 1.38549 * 120.28888 * 0.51757 * 24 23 22 26 26 C 1.38257 * 119.93533 * 359.75220 * 25 24 23 27 27 C 1.38413 * 119.90668 * 359.97438 * 26 25 24 28 28 C 1.51380 * 109.75493 * 179.97438 * 26 25 24 29 29 C 1.54346 * 105.16841 * 17.20236 * 28 26 25 30 30 C 1.51388 * 130.32086 * 179.73633 * 25 24 23 31 31 H 1.08996 * 109.47165 * 182.42602 * 1 2 3 32 32 H 1.09002 * 109.46767 * 302.42766 * 1 2 3 33 33 H 1.09002 * 109.47184 * 62.42047 * 1 2 3 34 34 H 1.09003 * 110.36295 * 86.03825 * 4 2 1 35 35 H 1.09001 * 110.36644 * 323.71694 * 4 2 1 36 36 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.88280 * 118.13142 * 14 5 4 38 38 H 1.09001 * 109.88287 * 239.29807 * 14 5 4 39 39 H 0.97003 * 120.00183 * 88.69064 * 17 15 14 40 40 H 1.09002 * 109.47461 * 300.00540 * 20 18 17 41 41 H 1.09011 * 109.46659 * 60.00162 * 20 18 17 42 42 H 1.08000 * 120.05801 * 359.96964 * 23 22 21 43 43 H 1.07999 * 119.85578 * 180.29623 * 24 23 22 44 44 H 1.08003 * 119.91312 * 180.02562 * 27 26 25 45 45 H 1.08997 * 110.30219 * 136.12498 * 28 26 25 46 46 H 1.08998 * 110.30638 * 258.18665 * 28 26 25 47 47 H 1.08998 * 110.81892 * 91.85747 * 29 28 26 48 48 H 1.08997 * 110.82285 * 215.40193 * 29 28 26 49 49 H 1.09002 * 110.30265 * 43.89408 * 30 25 24 50 50 H 1.09003 * 110.30178 * 281.74373 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2007 5 7 3.4275 -1.2421 -0.7743 6 6 4.4641 -1.5650 -1.6086 7 1 4.3331 -1.5100 -2.6792 8 6 5.6856 -1.9572 -1.0782 9 7 5.8455 -2.0238 0.2265 10 14 7.1022 -2.3904 -2.2162 11 1 7.8991 -1.1702 -2.5012 12 1 7.9678 -3.4059 -1.5646 13 1 6.5657 -2.9395 -3.4874 14 6 3.4667 -1.2786 0.6949 15 6 2.0870 -0.8079 1.2019 16 1 1.4464 -1.6616 1.4226 17 7 2.2296 0.0495 2.3812 18 6 2.2020 -0.4919 3.6152 19 8 2.0597 -1.6888 3.7492 20 6 2.3492 0.3900 4.8283 21 8 2.2874 -0.4112 6.0099 22 6 2.4052 0.2344 7.2000 23 6 2.5824 1.6102 7.2306 24 6 2.6961 2.2620 8.4416 25 6 2.6449 1.5472 9.6274 26 6 2.4740 0.1755 9.5993 27 6 2.3540 -0.4803 8.3863 28 6 2.4521 -0.3664 11.0126 29 6 2.1886 0.8603 11.9115 30 6 2.7490 2.0203 11.0617 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5511 0.8675 33 1 -0.3633 0.4758 -0.9109 34 1 2.1553 -0.1713 -2.0840 35 1 1.4522 -1.6702 -1.4028 36 1 6.6989 -2.2982 0.5972 37 1 3.6617 -2.2955 1.0354 38 1 4.2432 -0.6073 1.0619 39 1 2.3437 1.0068 2.2740 40 1 3.3086 0.9058 4.7884 41 1 1.5428 1.1233 4.8444 42 1 2.6274 2.1704 6.3083 43 1 2.8292 3.3335 8.4651 44 1 2.2201 -1.5517 8.3643 45 1 1.6509 -1.0968 11.1252 46 1 3.4127 -0.8185 11.2594 47 1 1.1207 0.9897 12.0872 48 1 2.7296 0.7736 12.8537 49 1 2.1507 2.9197 11.2077 50 1 3.7901 2.2113 11.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210809340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:12 Heat of formation + Delta-G solvation = -47.253643 kcal Electronic energy + Delta-G solvation = -29301.216686 eV Core-core repulsion = 25293.058224 eV Total energy + Delta-G solvation = -4008.158462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63493 -40.92764 -39.67283 -38.84887 -35.74521 -35.63223 -34.35634 -32.48793 -32.18627 -30.64967 -29.41830 -28.92044 -27.65577 -27.22456 -25.27487 -23.81411 -22.70885 -21.75721 -21.67170 -21.62058 -20.95300 -18.96979 -18.89876 -18.22442 -17.48460 -17.30264 -16.91420 -16.72303 -16.49443 -16.13148 -15.70487 -15.53668 -15.33066 -15.08119 -14.72162 -14.40392 -14.36288 -14.08990 -13.78803 -13.70816 -13.48964 -13.37776 -13.34404 -13.07199 -12.89576 -12.85644 -12.59588 -12.47705 -12.24026 -12.19341 -12.07162 -12.00258 -11.87835 -11.68305 -11.62931 -11.48448 -11.39350 -10.95630 -10.76430 -10.07765 -9.78275 -8.99895 -8.94657 -7.86734 -5.24542 0.33570 0.42250 1.42501 1.45167 1.46094 1.54573 1.55655 2.46443 2.61617 2.72623 3.31699 3.45260 3.59972 3.66460 3.67817 3.76150 3.89533 4.00092 4.03389 4.09697 4.12227 4.15736 4.21398 4.37428 4.40702 4.47338 4.50357 4.61164 4.71590 4.74661 4.87233 4.87840 4.97283 5.03678 5.05718 5.06059 5.07201 5.16371 5.23830 5.27838 5.32238 5.36825 5.42354 5.43101 5.49606 5.58354 5.68374 5.74787 5.79857 6.14598 6.33752 6.53685 7.04282 7.19837 7.73877 8.37479 9.22484 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002037 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.432455 B =13743.037347 C =14852.537270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.098 0.902 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.240 4.240 7 H 0.090 0.910 8 C -0.073 4.073 9 N -0.954 5.954 10 Si 0.981 3.019 11 H -0.281 1.281 12 H -0.300 1.300 13 H -0.266 1.266 14 C 0.186 3.814 15 C 0.136 3.864 16 H 0.072 0.928 17 N -0.692 5.692 18 C 0.509 3.491 19 O -0.576 6.576 20 C 0.050 3.950 21 O -0.323 6.323 22 C 0.109 3.891 23 C -0.210 4.210 24 C -0.070 4.070 25 C -0.146 4.146 26 C -0.071 4.071 27 C -0.165 4.165 28 C -0.086 4.086 29 C -0.115 4.115 30 C -0.076 4.076 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.244 0.756 37 H -0.014 1.014 38 H 0.022 0.978 39 H 0.419 0.581 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 15.446 20.059 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.116 0.884 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.107 0.893 8 C -0.265 4.265 9 N -0.603 5.603 10 Si 0.809 3.191 11 H -0.208 1.208 12 H -0.227 1.227 13 H -0.191 1.191 14 C 0.059 3.941 15 C 0.030 3.970 16 H 0.090 0.910 17 N -0.346 5.346 18 C 0.295 3.705 19 O -0.455 6.455 20 C -0.028 4.028 21 O -0.236 6.236 22 C 0.064 3.936 23 C -0.229 4.229 24 C -0.088 4.088 25 C -0.146 4.146 26 C -0.071 4.071 27 C -0.184 4.184 28 C -0.123 4.123 29 C -0.152 4.152 30 C -0.113 4.113 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.004 0.996 38 H 0.040 0.960 39 H 0.257 0.743 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.135 0.865 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.337 14.322 20.110 27.167 hybrid contribution 1.356 -0.607 -0.931 1.754 sum -9.981 13.715 19.179 25.603 Atomic orbital electron populations 1.21660 0.91716 1.02059 1.03272 1.22545 0.97249 0.99084 0.92230 0.88395 1.21878 0.85120 0.95837 0.96585 1.44723 1.09526 1.79220 1.01910 1.19524 0.89918 1.37602 0.89866 0.89261 1.25756 1.00784 1.02502 0.97467 1.70236 1.24031 1.54861 1.11174 0.85031 0.78813 0.77307 0.77904 1.20781 1.22685 1.19073 1.21130 0.92803 0.96462 0.83657 1.22086 0.96519 0.93659 0.84745 0.90997 1.45519 1.73276 1.11826 1.03940 1.20732 0.75931 0.88523 0.85293 1.90735 1.50010 1.17885 1.86856 1.22589 1.06400 0.92702 0.81118 1.86108 1.88178 1.36864 1.12496 1.19084 0.97718 0.92047 0.84735 1.21439 1.08419 0.92283 1.00744 1.20753 0.96904 1.00961 0.90163 1.20969 1.03007 0.94006 0.96633 1.20667 0.96909 0.95031 0.94540 1.19967 1.08263 1.00272 0.89873 1.21190 1.03099 0.99202 0.88835 1.22325 1.02114 0.92596 0.98197 1.21054 1.02445 0.99290 0.88464 0.93432 0.90978 0.90296 0.92360 0.95897 0.94702 0.99576 0.96002 0.74331 0.86606 0.84892 0.82761 0.83132 0.86533 0.90200 0.89432 0.90454 0.88597 0.89447 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.30 71.98 0.67 -2.25 16 2 C -0.09 -2.78 3.27 -9.40 -0.03 -2.81 16 3 H 0.10 2.64 8.01 -2.39 -0.02 2.62 16 4 C 0.13 5.13 6.70 86.86 0.58 5.71 16 5 N -0.63 -32.72 3.39 -691.93 -2.35 -35.07 16 6 C -0.24 -13.66 10.28 84.04 0.86 -12.80 16 7 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 8 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 9 N -0.95 -60.32 10.31 21.65 0.22 -60.10 16 10 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 C 0.19 9.70 5.13 86.73 0.45 10.14 16 15 C 0.14 5.20 2.78 46.19 0.13 5.33 16 16 H 0.07 3.05 7.42 -2.39 -0.02 3.03 16 17 N -0.69 -21.00 5.11 -436.90 -2.23 -23.23 16 18 C 0.51 17.33 7.91 87.66 0.69 18.02 16 19 O -0.58 -26.73 16.14 16.02 0.26 -26.48 16 20 C 0.05 1.19 5.22 71.24 0.37 1.56 16 21 O -0.32 -10.12 9.67 -73.40 -0.71 -10.83 16 22 C 0.11 2.88 6.68 22.48 0.15 3.03 16 23 C -0.21 -4.12 9.04 22.34 0.20 -3.92 16 24 C -0.07 -1.18 10.03 22.29 0.22 -0.96 16 25 C -0.15 -2.58 6.14 -19.57 -0.12 -2.70 16 26 C -0.07 -1.48 6.13 -19.60 -0.12 -1.60 16 27 C -0.16 -4.30 9.98 22.40 0.22 -4.08 16 28 C -0.09 -1.25 6.77 30.52 0.21 -1.04 16 29 C -0.12 -1.12 7.08 31.50 0.22 -0.90 16 30 C -0.08 -0.84 6.77 30.52 0.21 -0.64 16 31 H 0.05 1.17 8.11 -2.39 -0.02 1.15 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 36 H 0.24 15.12 8.31 -92.70 -0.77 14.35 16 37 H -0.01 -0.89 7.53 -2.39 -0.02 -0.91 16 38 H 0.02 1.25 7.24 -2.39 -0.02 1.23 16 39 H 0.42 8.93 8.56 -92.71 -0.79 8.14 16 40 H 0.12 2.23 7.65 -2.39 -0.02 2.21 16 41 H 0.13 1.99 7.68 -2.38 -0.02 1.97 16 42 H 0.15 2.11 6.31 -2.91 -0.02 2.10 16 43 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.12 3.16 8.06 -2.91 -0.02 3.13 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 50 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -84.57 402.27 2.75 -81.82 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.15 Total: 18.58 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.38 Total: 6.32 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -4.36 Total: -118.41 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.45 Total: -37.30 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -84.57 2.75 -81.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210809340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.565 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds