Wall clock time and date at job start Wed Apr 1 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47277 * 2 1 4 4 C 1.53000 * 109.46939 * 119.99810 * 2 1 3 5 5 O 1.42901 * 109.47418 * 175.00357 * 4 2 1 6 6 C 1.42898 * 114.00499 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47224 * 179.97438 * 6 5 4 8 8 N 1.46910 * 109.47174 * 64.99986 * 7 6 5 9 9 C 1.46898 * 110.99907 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.29063 * 35.68215 * 9 8 7 11 11 C 1.53996 * 110.33107 * 273.54827 * 9 8 7 12 12 N 1.47487 * 107.08500 * 242.41585 * 11 9 8 13 13 C 1.34778 * 127.03718 * 154.51855 * 12 11 9 14 14 O 1.21276 * 119.99491 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99778 * 180.02562 * 13 12 11 16 16 S 1.81004 * 109.46742 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99907 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99832 * 180.27629 * 17 16 15 20 20 N 1.31634 * 120.00296 * 359.72198 * 19 17 16 21 21 Si 1.86801 * 119.99859 * 179.72079 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99855 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00015 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99815 * 21 19 17 25 25 C 1.48122 * 105.92767 * 334.77384 * 12 11 9 26 26 C 1.54592 * 103.42317 * 39.02865 * 25 12 11 27 27 H 1.08999 * 110.73611 * 81.23751 * 26 25 12 28 28 C 1.52999 * 110.83561 * 204.44413 * 26 25 12 29 29 H 1.08999 * 109.47245 * 300.00015 * 1 2 3 30 30 H 1.09001 * 109.46709 * 60.00972 * 1 2 3 31 31 H 1.09011 * 109.46711 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47613 * 239.99301 * 2 1 3 33 33 H 1.09004 * 109.47026 * 59.99375 * 3 2 1 34 34 H 1.08997 * 109.47298 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46432 * 299.99947 * 3 2 1 36 36 H 1.08998 * 109.47758 * 55.00280 * 4 2 1 37 37 H 1.09004 * 109.47395 * 294.99830 * 4 2 1 38 38 H 1.09001 * 109.47197 * 59.99853 * 6 5 4 39 39 H 1.08999 * 109.46979 * 299.99795 * 6 5 4 40 40 H 1.08999 * 109.47737 * 304.99727 * 7 6 5 41 41 H 1.09004 * 109.46912 * 184.99696 * 7 6 5 42 42 H 1.00903 * 110.99513 * 56.04531 * 8 7 6 43 43 H 1.09005 * 109.91640 * 123.05518 * 11 9 8 44 44 H 1.08998 * 109.91642 * 1.77380 * 11 9 8 45 45 H 1.09000 * 109.47396 * 59.99696 * 15 13 12 46 46 H 1.09001 * 109.47080 * 299.99119 * 15 13 12 47 47 H 0.96995 * 120.00136 * 180.02562 * 20 19 17 48 48 H 1.09010 * 110.65933 * 157.50685 * 25 12 11 49 49 H 1.08995 * 110.66354 * 280.62036 * 25 12 11 50 50 H 1.08996 * 109.47280 * 173.56003 * 28 26 25 51 51 H 1.09002 * 109.47139 * 293.55933 * 28 26 25 52 52 H 1.09005 * 109.47115 * 53.55527 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1922 6 6 4.0449 -1.4855 2.3177 7 6 5.5647 -1.5381 2.1501 8 7 6.1080 -0.1735 2.1787 9 6 7.5684 -0.1849 2.0207 10 1 7.8685 -0.9788 1.3367 11 6 8.2530 -0.3695 3.3877 12 7 9.0566 0.8418 3.6370 13 6 9.4252 1.3394 4.8341 14 8 9.0903 0.7754 5.8542 15 6 10.2523 2.5971 4.9050 16 16 10.5808 3.0063 6.6373 17 6 11.5345 4.4733 6.4296 18 1 11.7439 4.8452 5.4375 19 6 12.0217 5.1473 7.5408 20 7 11.7668 4.6937 8.7499 21 14 13.0394 6.6982 7.3204 22 1 12.1418 7.8812 7.3055 23 1 14.0028 6.8219 8.4437 24 1 13.7825 6.6245 6.0368 25 6 9.3705 1.4031 2.3027 26 6 8.0637 1.1863 1.5057 27 1 7.3391 1.9684 1.7324 28 6 8.3456 1.1310 0.0029 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9562 -0.8900 36 1 1.6054 -1.7198 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.6519 -2.5000 2.3853 39 1 3.7981 -0.9388 3.2278 40 1 5.8092 -2.0066 1.1967 41 1 6.0000 -2.1196 2.9629 42 1 5.8399 0.3047 3.0258 43 1 8.9006 -1.2461 3.3634 44 1 7.5002 -0.4825 4.1678 45 1 9.7083 3.4167 4.4353 46 1 11.1963 2.4411 4.3829 47 1 12.1070 5.1650 9.5265 48 1 9.6028 2.4655 2.3773 49 1 10.1949 0.8597 1.8410 50 1 7.4321 0.8646 -0.5286 51 1 8.6928 2.1064 -0.3378 52 1 9.1129 0.3826 -0.1955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214173578.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:54 Heat of formation + Delta-G solvation = -94.501943 kcal Electronic energy + Delta-G solvation = -27783.698850 eV Core-core repulsion = 23908.935499 eV Total energy + Delta-G solvation = -3874.763351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.07156 -38.68732 -37.80104 -35.84990 -34.60733 -32.59369 -32.42392 -30.49805 -29.16451 -27.45327 -26.87938 -26.31776 -25.87232 -25.43066 -23.01633 -22.09408 -20.57494 -20.27340 -19.35997 -17.68860 -17.19981 -16.80524 -16.44421 -16.16080 -15.58400 -15.31092 -15.19214 -14.80284 -14.70075 -14.41050 -14.04985 -13.87098 -13.63736 -13.59729 -13.27101 -13.07323 -12.87940 -12.65462 -12.52306 -12.50382 -12.36524 -12.21395 -12.00435 -11.81136 -11.59127 -11.35183 -11.26984 -11.16147 -11.06119 -11.03199 -11.01846 -10.88447 -10.81692 -10.72007 -9.83887 -9.81332 -9.42895 -9.06620 -8.87281 -8.35687 -8.23496 -6.50404 -6.21562 -3.92325 2.89220 3.05243 3.22563 3.26081 3.30533 3.35884 3.60625 3.82961 4.20183 4.36043 4.40202 4.49841 4.54414 4.72142 4.83337 4.86963 4.87722 4.99654 5.06255 5.09410 5.13170 5.13601 5.16494 5.20648 5.26021 5.29168 5.36098 5.40070 5.42406 5.52493 5.55221 5.56173 5.59219 5.62218 5.67495 5.70036 5.75212 5.83201 5.89691 5.95605 6.01665 6.10241 6.11592 6.14233 6.36228 6.76322 6.96181 7.12561 7.59652 7.69840 8.35373 8.55150 9.23677 10.85887 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.001867 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.334195 B =14994.288633 C =15277.219026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.065 3.935 5 O -0.369 6.369 6 C 0.065 3.935 7 C 0.059 3.941 8 N -0.668 5.668 9 C 0.080 3.920 10 H 0.093 0.907 11 C 0.079 3.921 12 N -0.626 5.626 13 C 0.552 3.448 14 O -0.518 6.518 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.101 3.899 26 C -0.093 4.093 27 H 0.090 0.910 28 C -0.136 4.136 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.345 0.655 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.057 0.943 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.605 -12.355 -21.344 30.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.012 4.012 5 O -0.288 6.288 6 C -0.012 4.012 7 C -0.070 4.070 8 N -0.299 5.299 9 C -0.031 4.031 10 H 0.111 0.889 11 C -0.047 4.047 12 N -0.363 5.363 13 C 0.340 3.660 14 O -0.393 6.393 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.022 4.022 26 C -0.113 4.113 27 H 0.109 0.891 28 C -0.194 4.194 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.076 0.924 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.067 -12.953 -20.329 30.124 hybrid contribution 1.156 1.127 -0.125 1.619 sum -16.911 -11.826 -20.455 29.056 Atomic orbital electron populations 1.21800 0.94567 1.01799 1.02257 1.21069 0.95191 0.97178 0.97762 1.21778 1.02410 0.94753 1.01200 1.22560 0.81827 0.98729 0.98108 1.87984 1.19139 1.78982 1.42691 1.22488 0.93380 0.96037 0.89311 1.22022 0.92666 0.90513 1.01840 1.60570 1.08905 1.16138 1.44335 1.22639 0.87128 0.98486 0.94881 0.88888 1.22774 0.95650 0.88591 0.97637 1.48753 1.54631 1.27258 1.05694 1.20037 0.79363 0.85397 0.81165 1.90703 1.54802 1.60596 1.33164 1.23499 1.01253 0.96598 1.08304 1.85395 1.68906 1.32790 0.96361 1.22859 1.38377 1.11485 0.95570 0.90908 1.24994 0.96081 0.98068 0.94438 1.70019 1.43436 1.39130 0.97712 0.86163 0.79520 0.81793 0.78001 1.20250 1.20746 1.19680 1.22602 0.97058 1.00190 0.82378 1.22209 0.96488 0.97269 0.95338 0.89143 1.21682 1.01818 1.01817 0.94106 0.92519 0.92044 0.92689 0.90552 0.93013 0.91316 0.93040 0.93894 0.93548 0.93081 0.93389 0.90001 0.93537 0.83614 0.91908 0.90911 0.89249 0.89292 0.92186 0.89684 0.91009 0.91735 0.92371 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.09 -0.65 3.16 -90.62 -0.29 -0.94 16 3 C -0.14 -1.10 9.09 37.16 0.34 -0.76 16 4 C 0.06 0.49 5.32 37.16 0.20 0.68 16 5 O -0.37 -3.45 9.82 -35.23 -0.35 -3.80 16 6 C 0.07 0.50 6.22 37.15 0.23 0.73 16 7 C 0.06 0.46 5.91 -3.82 -0.02 0.43 16 8 N -0.67 -6.12 6.17 -105.27 -0.65 -6.77 16 9 C 0.08 0.73 2.88 -66.34 -0.19 0.54 16 10 H 0.09 0.75 7.57 -51.93 -0.39 0.36 16 11 C 0.08 0.94 6.54 -2.98 -0.02 0.92 16 12 N -0.63 -9.19 3.29 -169.98 -0.56 -9.75 16 13 C 0.55 10.88 7.91 -10.99 -0.09 10.79 16 14 O -0.52 -12.25 16.20 5.56 0.09 -12.16 16 15 C -0.15 -3.05 5.09 36.01 0.18 -2.87 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.10 1.12 6.38 -2.31 -0.01 1.10 16 26 C -0.09 -0.87 3.36 -88.93 -0.30 -1.17 16 27 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 28 C -0.14 -1.03 9.16 37.16 0.34 -0.69 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.63 7.82 -51.93 -0.41 0.23 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 42 H 0.34 3.45 8.23 -39.29 -0.32 3.13 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 45 H 0.09 1.73 7.90 -51.92 -0.41 1.32 16 46 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.08 0.94 7.23 -51.92 -0.38 0.57 16 49 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 LS Contribution 432.10 15.07 6.51 6.51 Total: -1.00 -34.26 432.10 -10.40 -44.66 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -9.86 Total: -0.99 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 0.91 Total: -4.71 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.48 Total: -42.09 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.26 Total: -15.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.51 Total: 6.51 kcal Total: -34.26 -10.40 -44.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214173578.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.841 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds