Wall clock time and date at job start Wed Apr 1 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47277 * 2 1 4 4 C 1.53000 * 109.46939 * 119.99810 * 2 1 3 5 5 O 1.42901 * 109.47418 * 175.00357 * 4 2 1 6 6 C 1.42898 * 114.00499 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47224 * 179.97438 * 6 5 4 8 8 N 1.46910 * 109.47174 * 64.99986 * 7 6 5 9 9 C 1.46898 * 110.99907 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.29063 * 35.68215 * 9 8 7 11 11 C 1.53996 * 110.33107 * 273.54827 * 9 8 7 12 12 N 1.47487 * 107.08500 * 242.41585 * 11 9 8 13 13 C 1.34778 * 127.03718 * 154.51855 * 12 11 9 14 14 O 1.21276 * 119.99491 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99778 * 180.02562 * 13 12 11 16 16 S 1.81004 * 109.46742 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99907 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99736 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99832 * 180.27629 * 17 16 15 20 20 N 1.31634 * 120.00296 * 359.72198 * 19 17 16 21 21 Si 1.86801 * 119.99859 * 179.72079 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99855 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00015 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99815 * 21 19 17 25 25 C 1.48122 * 105.92767 * 334.77384 * 12 11 9 26 26 C 1.54592 * 103.42317 * 39.02865 * 25 12 11 27 27 H 1.08999 * 110.73611 * 81.23751 * 26 25 12 28 28 C 1.52999 * 110.83561 * 204.44413 * 26 25 12 29 29 H 1.08999 * 109.47245 * 300.00015 * 1 2 3 30 30 H 1.09001 * 109.46709 * 60.00972 * 1 2 3 31 31 H 1.09011 * 109.46711 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47613 * 239.99301 * 2 1 3 33 33 H 1.09004 * 109.47026 * 59.99375 * 3 2 1 34 34 H 1.08997 * 109.47298 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46432 * 299.99947 * 3 2 1 36 36 H 1.08998 * 109.47758 * 55.00280 * 4 2 1 37 37 H 1.09004 * 109.47395 * 294.99830 * 4 2 1 38 38 H 1.09001 * 109.47197 * 59.99853 * 6 5 4 39 39 H 1.08999 * 109.46979 * 299.99795 * 6 5 4 40 40 H 1.08999 * 109.47737 * 304.99727 * 7 6 5 41 41 H 1.09004 * 109.46912 * 184.99696 * 7 6 5 42 42 H 1.00903 * 110.99513 * 56.04531 * 8 7 6 43 43 H 1.09005 * 109.91640 * 123.05518 * 11 9 8 44 44 H 1.08998 * 109.91642 * 1.77380 * 11 9 8 45 45 H 1.09000 * 109.47396 * 59.99696 * 15 13 12 46 46 H 1.09001 * 109.47080 * 299.99119 * 15 13 12 47 47 H 0.96995 * 120.00136 * 180.02562 * 20 19 17 48 48 H 1.09010 * 110.65933 * 157.50685 * 25 12 11 49 49 H 1.08995 * 110.66354 * 280.62036 * 25 12 11 50 50 H 1.08996 * 109.47280 * 173.56003 * 28 26 25 51 51 H 1.09002 * 109.47139 * 293.55933 * 28 26 25 52 52 H 1.09005 * 109.47115 * 53.55527 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1922 6 6 4.0449 -1.4855 2.3177 7 6 5.5647 -1.5381 2.1501 8 7 6.1080 -0.1735 2.1787 9 6 7.5684 -0.1849 2.0207 10 1 7.8685 -0.9788 1.3367 11 6 8.2530 -0.3695 3.3877 12 7 9.0566 0.8418 3.6370 13 6 9.4252 1.3394 4.8341 14 8 9.0903 0.7754 5.8542 15 6 10.2523 2.5971 4.9050 16 16 10.5808 3.0063 6.6373 17 6 11.5345 4.4733 6.4296 18 1 11.7439 4.8452 5.4375 19 6 12.0217 5.1473 7.5408 20 7 11.7668 4.6937 8.7499 21 14 13.0394 6.6982 7.3204 22 1 12.1418 7.8812 7.3055 23 1 14.0028 6.8219 8.4437 24 1 13.7825 6.6245 6.0368 25 6 9.3705 1.4031 2.3027 26 6 8.0637 1.1863 1.5057 27 1 7.3391 1.9684 1.7324 28 6 8.3456 1.1310 0.0029 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9562 -0.8900 36 1 1.6054 -1.7198 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.6519 -2.5000 2.3853 39 1 3.7981 -0.9388 3.2278 40 1 5.8092 -2.0066 1.1967 41 1 6.0000 -2.1196 2.9629 42 1 5.8399 0.3047 3.0258 43 1 8.9006 -1.2461 3.3634 44 1 7.5002 -0.4825 4.1678 45 1 9.7083 3.4167 4.4353 46 1 11.1963 2.4411 4.3829 47 1 12.1070 5.1650 9.5265 48 1 9.6028 2.4655 2.3773 49 1 10.1949 0.8597 1.8410 50 1 7.4321 0.8646 -0.5286 51 1 8.6928 2.1064 -0.3378 52 1 9.1129 0.3826 -0.1955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214173578.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:53 Heat of formation + Delta-G solvation = -117.149944 kcal Electronic energy + Delta-G solvation = -27784.680941 eV Core-core repulsion = 23908.935499 eV Total energy + Delta-G solvation = -3875.745442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22200 -39.46496 -38.94150 -36.55907 -35.37630 -34.60184 -33.56257 -31.65494 -30.26908 -28.00482 -27.92197 -27.55612 -27.17351 -26.48828 -23.87511 -22.81889 -21.23067 -20.99206 -20.78196 -19.60418 -18.15505 -17.82991 -17.26844 -17.14179 -16.89650 -16.66850 -16.30325 -16.21346 -15.76125 -15.46818 -15.18649 -14.78360 -14.75174 -14.54517 -14.30572 -14.07035 -13.79069 -13.53080 -13.46544 -13.37404 -13.29397 -13.16253 -13.03033 -12.90642 -12.85463 -12.72134 -12.62178 -12.21000 -12.08356 -11.91208 -11.79096 -11.73897 -11.71090 -11.50022 -11.43590 -11.15615 -11.00690 -10.46148 -10.30914 -9.94654 -9.27234 -8.70143 -8.36085 -6.15189 1.21394 1.42008 1.43423 1.51642 1.55230 2.03912 2.25804 2.77637 2.98063 3.08246 3.22725 3.49548 3.56300 3.88959 3.93985 3.99619 4.08671 4.12369 4.17027 4.22131 4.26351 4.29841 4.36544 4.41066 4.51305 4.53850 4.56579 4.64337 4.65454 4.67057 4.74433 4.78025 4.82400 4.85041 4.92386 4.95540 5.03386 5.08953 5.15009 5.21874 5.24992 5.35696 5.40219 5.42515 5.48044 5.49885 6.04778 6.18344 6.26014 6.37808 6.42416 7.04873 7.06600 8.73255 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.001867 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.334195 B =14994.288633 C =15277.219026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.141 4.141 4 C 0.062 3.938 5 O -0.388 6.388 6 C 0.063 3.937 7 C 0.060 3.940 8 N -0.673 5.673 9 C 0.093 3.907 10 H 0.114 0.886 11 C 0.076 3.924 12 N -0.618 5.618 13 C 0.549 3.451 14 O -0.570 6.570 15 C -0.119 4.119 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.257 1.257 25 C 0.094 3.906 26 C -0.086 4.086 27 H 0.076 0.924 28 C -0.129 4.129 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.337 0.663 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.272 0.728 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.505 -12.227 -24.294 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.015 4.015 5 O -0.307 6.307 6 C -0.014 4.014 7 C -0.069 4.069 8 N -0.303 5.303 9 C -0.019 4.019 10 H 0.132 0.868 11 C -0.049 4.049 12 N -0.352 5.352 13 C 0.337 3.663 14 O -0.449 6.449 15 C -0.270 4.270 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.181 1.181 25 C -0.028 4.028 26 C -0.105 4.105 27 H 0.095 0.905 28 C -0.187 4.187 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.114 0.886 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.987 -12.844 -23.355 32.155 hybrid contribution 1.041 0.994 0.682 1.593 sum -16.946 -11.850 -22.673 30.686 Atomic orbital electron populations 1.21773 0.93252 1.02458 1.02583 1.21084 0.96256 0.96454 0.97353 1.21737 1.01118 0.95493 1.01476 1.22655 0.81164 0.99398 0.98249 1.87954 1.20106 1.79359 1.43306 1.22556 0.93381 0.96696 0.88737 1.22063 0.92698 0.89758 1.02342 1.60617 1.08753 1.17043 1.43875 1.22629 0.86872 0.99092 0.93267 0.86767 1.23029 0.95287 0.87647 0.98890 1.48684 1.53311 1.27726 1.05520 1.19769 0.79401 0.85010 0.82080 1.90679 1.56994 1.61898 1.35291 1.23292 1.02661 0.97976 1.03107 1.85576 1.69555 1.33767 1.03419 1.23191 1.38426 1.11505 0.96286 0.89886 1.26148 0.97225 1.01881 0.93876 1.70185 1.44779 1.40995 0.98800 0.84936 0.77653 0.76751 0.78533 1.19255 1.20222 1.18117 1.22946 0.98801 1.00538 0.80468 1.22154 0.95101 0.96801 0.96492 0.90515 1.21628 1.02222 1.02684 0.92142 0.92471 0.91449 0.91879 0.90915 0.93275 0.93193 0.92217 0.92780 0.93828 0.91533 0.93882 0.89438 0.92858 0.84398 0.90931 0.92519 0.87632 0.87539 0.91952 0.89585 0.88640 0.91852 0.91798 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.09 -1.21 3.16 -10.79 -0.03 -1.24 16 3 C -0.14 -2.08 9.09 71.98 0.65 -1.43 16 4 C 0.06 0.88 5.32 71.98 0.38 1.26 16 5 O -0.39 -6.92 9.82 -148.98 -1.46 -8.38 16 6 C 0.06 0.91 6.22 71.98 0.45 1.36 16 7 C 0.06 0.85 5.91 86.30 0.51 1.36 16 8 N -0.67 -11.53 6.17 -486.97 -3.01 -14.54 16 9 C 0.09 1.51 2.88 45.80 0.13 1.64 16 10 H 0.11 1.46 7.57 -2.38 -0.02 1.44 16 11 C 0.08 1.74 6.54 86.53 0.57 2.30 16 12 N -0.62 -17.52 3.29 -810.08 -2.67 -20.19 16 13 C 0.55 21.82 7.91 87.66 0.69 22.52 16 14 O -0.57 -27.94 16.20 -3.02 -0.05 -27.98 16 15 C -0.12 -4.97 5.09 71.24 0.36 -4.61 16 16 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 17 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.82 29.55 68.60 2.03 45.84 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 C 0.09 1.86 6.38 86.61 0.55 2.41 16 26 C -0.09 -1.40 3.36 -9.70 -0.03 -1.43 16 27 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 28 C -0.13 -1.55 9.16 71.98 0.66 -0.89 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.05 0.92 7.82 -2.39 -0.02 0.90 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.09 1.15 8.08 -2.39 -0.02 1.14 16 41 H 0.05 0.69 8.11 -2.38 -0.02 0.67 16 42 H 0.34 6.69 8.23 -89.69 -0.74 5.95 16 43 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.06 1.50 7.54 -2.39 -0.02 1.48 16 45 H 0.11 4.02 7.90 -2.40 -0.02 4.00 16 46 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 47 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.09 1.70 7.23 -2.38 -0.02 1.69 16 49 H 0.10 1.51 8.01 -2.39 -0.02 1.49 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.07 0.66 8.10 -2.38 -0.02 0.64 16 Total: -1.00 -76.79 432.10 0.76 -76.03 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.13 Total: 22.22 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 6.67 Total: -7.15 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -5.39 Total: -90.87 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.51 Total: -36.36 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -76.79 0.76 -76.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214173578.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.122 kcal (2) G-P(sol) polarization free energy of solvation -76.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds