Wall clock time and date at job start Wed Apr 1 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47348 * 2 1 4 4 N 1.46501 * 109.47221 * 240.00118 * 2 1 3 5 5 C 1.34773 * 120.00014 * 85.00032 * 4 2 1 6 6 O 1.21357 * 119.99916 * 0.02562 * 5 4 2 7 7 C 1.49447 * 120.00171 * 180.02562 * 5 4 2 8 8 O 1.21346 * 120.00302 * 359.97438 * 7 5 4 9 9 N 1.34785 * 119.99946 * 179.97438 * 7 5 4 10 10 C 1.46501 * 119.99789 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46837 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00291 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99833 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47457 * 60.00055 * 16 14 12 18 18 H 1.48503 * 109.47056 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46977 * 299.99756 * 16 14 12 20 20 C 1.50700 * 109.46985 * 120.00536 * 2 1 3 21 21 C 1.38263 * 120.11913 * 80.02253 * 20 2 1 22 22 C 1.37934 * 119.77354 * 180.12248 * 21 20 2 23 23 C 1.38911 * 120.54492 * 0.03068 * 22 21 20 24 24 C 1.37664 * 119.67945 * 359.40742 * 23 22 21 25 25 C 1.37941 * 120.11119 * 259.99834 * 20 2 1 26 26 C 1.50634 * 122.56129 * 181.00776 * 24 23 22 27 27 C 1.52731 * 110.57413 * 342.19283 * 26 24 23 28 28 C 1.53323 * 108.39439 * 51.19160 * 27 26 24 29 29 C 1.50623 * 117.75808 * 179.32558 * 23 22 21 30 30 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46855 * 299.99627 * 1 2 3 32 32 H 1.09003 * 109.47264 * 59.99684 * 1 2 3 33 33 H 0.96995 * 120.00544 * 265.00284 * 4 2 1 34 34 H 0.96993 * 120.00019 * 0.02562 * 9 7 5 35 35 H 1.09001 * 109.47490 * 300.00370 * 10 9 7 36 36 H 1.09002 * 109.46899 * 60.00135 * 10 9 7 37 37 H 1.09001 * 109.47282 * 300.00431 * 11 10 9 38 38 H 1.09007 * 109.46809 * 60.00251 * 11 10 9 39 39 H 0.97003 * 119.99921 * 180.02562 * 15 14 12 40 40 H 1.08003 * 120.10746 * 0.14179 * 21 20 2 41 41 H 1.07999 * 119.72544 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.72708 * 359.97438 * 25 20 2 43 43 H 1.08995 * 109.25078 * 102.47570 * 26 24 23 44 44 H 1.08996 * 109.25356 * 221.90912 * 26 24 23 45 45 H 1.08998 * 109.67889 * 170.91597 * 27 26 24 46 46 H 1.08997 * 109.68152 * 291.46137 * 27 26 24 47 47 H 1.09000 * 109.67877 * 49.92177 * 28 27 26 48 48 H 1.08999 * 109.67645 * 170.46352 * 28 27 26 49 49 H 1.09002 * 109.25136 * 282.66358 * 29 23 22 50 50 H 1.09002 * 109.25489 * 42.08408 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8589 1.1594 -2.4114 7 6 2.6447 -0.7228 -3.5775 8 8 2.9333 -1.9002 -3.5231 9 7 2.7729 -0.0505 -4.7386 10 6 3.2613 -0.7410 -5.9348 11 6 3.3128 0.2421 -7.1060 12 6 3.8157 -0.4681 -8.3363 13 1 4.0726 -1.5160 -8.2878 14 6 3.9480 0.2199 -9.5238 15 7 3.6358 1.4961 -9.5826 16 14 4.5708 -0.6606 -11.0490 17 1 3.6542 -1.7801 -11.3833 18 1 4.6220 0.2940 -12.1854 19 1 5.9319 -1.1954 -10.7907 20 6 2.0323 -0.7105 1.2304 21 6 2.0682 -2.0922 1.2676 22 6 2.5269 -2.7352 2.3984 23 6 2.9529 -2.0061 3.5014 24 6 2.9281 -0.6303 3.4600 25 6 2.4583 0.0154 2.3233 26 6 3.3954 0.2240 4.6093 27 6 3.4563 -0.5952 5.8969 28 6 4.2616 -1.8705 5.6213 29 6 3.4269 -2.7724 4.7084 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6317 -1.1527 34 1 2.5426 0.8907 -4.7820 35 1 4.2607 -1.1329 -5.7456 36 1 2.5890 -1.5634 -6.1795 37 1 2.3136 0.6344 -7.2953 38 1 3.9854 1.0642 -6.8609 39 1 3.7285 1.9801 -10.4182 40 1 1.7384 -2.6659 0.4141 41 1 2.5550 -3.8145 2.4265 42 1 2.4308 1.0946 2.2931 43 1 4.3874 0.6161 4.3854 44 1 2.7030 1.0549 4.7442 45 1 3.9451 -0.0142 6.6788 46 1 2.4468 -0.8594 6.2120 47 1 5.2021 -1.6127 5.1345 48 1 4.4630 -2.3873 6.5596 49 1 2.5637 -3.1541 5.2536 50 1 4.0445 -3.6095 4.3829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261186262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:58 Heat of formation + Delta-G solvation = -79.419951 kcal Electronic energy + Delta-G solvation = -28683.602921 eV Core-core repulsion = 24674.049623 eV Total energy + Delta-G solvation = -4009.553298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84577 -40.18850 -38.46852 -37.17704 -35.38402 -34.76319 -33.00671 -32.83670 -31.42049 -29.92737 -29.77596 -28.77069 -25.88798 -24.65580 -23.82401 -23.36859 -22.58241 -21.56293 -20.97987 -20.15659 -19.40386 -18.39465 -16.99862 -16.62875 -16.26072 -15.85173 -15.73168 -15.66242 -15.18781 -14.84432 -14.72121 -14.49560 -14.42113 -14.27700 -13.91366 -13.78221 -13.52709 -13.45839 -13.10238 -12.95207 -12.70267 -12.59452 -12.31781 -12.18926 -12.00231 -11.67742 -11.48199 -11.35319 -11.33238 -11.23322 -11.04411 -10.84072 -10.72729 -10.68266 -10.38606 -9.79703 -9.46586 -9.41556 -9.20427 -9.04007 -8.77371 -8.69004 -8.41077 -6.09603 -4.13382 0.94932 1.05288 1.61970 2.54014 3.30933 3.34913 3.35304 3.37983 3.44455 3.89756 4.11379 4.23375 4.37921 4.40763 4.45877 4.59562 4.67986 4.70274 4.77444 4.92379 5.00654 5.01589 5.07623 5.11182 5.16812 5.27123 5.33952 5.40399 5.45340 5.48940 5.54896 5.58887 5.60302 5.71056 5.81051 5.86305 5.93362 6.05695 6.13119 6.18555 6.24250 6.29682 6.33600 6.60087 6.66841 6.69795 7.06330 7.46990 7.58264 7.67079 7.87442 7.93255 8.21685 8.34593 8.91886 9.51392 11.01774 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.001632 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.762644 B =17149.958772 C =17514.059259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.100 0.900 4 N -0.701 5.701 5 C 0.510 3.490 6 O -0.519 6.519 7 C 0.497 3.503 8 O -0.534 6.534 9 N -0.686 5.686 10 C 0.119 3.881 11 C 0.011 3.989 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.093 4.093 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.076 4.076 24 C -0.073 4.073 25 C -0.106 4.106 26 C -0.082 4.082 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.081 4.081 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.411 0.589 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 -4.889 33.427 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.079 3.921 3 H 0.118 0.882 4 N -0.355 5.355 5 C 0.291 3.709 6 O -0.394 6.394 7 C 0.277 3.723 8 O -0.412 6.412 9 N -0.337 5.337 10 C -0.003 4.003 11 C -0.027 4.027 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.093 4.093 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.076 4.076 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.158 4.158 28 C -0.158 4.158 29 C -0.118 4.118 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.662 -4.711 33.252 33.783 hybrid contribution 0.285 -0.422 -1.020 1.140 sum -3.377 -5.133 32.232 32.813 Atomic orbital electron populations 1.22173 0.93718 1.02769 1.03030 1.19856 0.94530 0.96780 0.80958 0.88231 1.45925 1.66025 1.14995 1.08599 1.20467 0.78579 0.87025 0.84816 1.90753 1.48409 1.15361 1.84902 1.19968 0.80476 0.87174 0.84724 1.90726 1.50008 1.15369 1.85061 1.46232 1.62970 1.15088 1.09362 1.21938 0.98454 0.96916 0.82994 1.19356 0.98238 0.94255 0.90809 1.20977 1.44731 0.96616 0.93979 0.92220 1.25001 0.95269 0.94884 0.99092 1.69952 1.47974 1.08140 1.26969 0.86552 0.79471 0.79329 0.82041 1.20108 1.21226 1.20118 1.19767 1.00322 0.93992 0.95259 1.20872 1.00083 0.93786 0.98361 1.21130 0.99327 0.99863 0.92954 1.19628 0.99354 0.92910 0.95710 1.19559 0.99233 0.93068 0.95487 1.20976 0.99010 0.99824 0.92640 1.20482 1.01689 0.97281 0.92412 1.21551 1.00765 0.96535 0.96906 1.21619 0.98679 0.96107 0.99411 1.20542 0.99724 0.97674 0.93889 0.92027 0.91197 0.91312 0.75124 0.75376 0.91871 0.91857 0.95647 0.95649 0.92726 0.85901 0.85917 0.85825 0.90520 0.90688 0.91436 0.91612 0.91460 0.91462 0.90541 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.46 37.16 0.35 -1.10 16 2 C 0.18 1.86 2.78 -69.08 -0.19 1.66 16 3 H 0.10 1.09 7.44 -51.93 -0.39 0.70 16 4 N -0.70 -8.42 5.02 -55.37 -0.28 -8.70 16 5 C 0.51 7.73 7.85 -11.59 -0.09 7.64 16 6 O -0.52 -8.71 16.14 5.49 0.09 -8.62 16 7 C 0.50 8.67 7.89 -11.58 -0.09 8.58 16 8 O -0.53 -10.20 16.48 5.50 0.09 -10.11 16 9 N -0.69 -12.62 5.55 -60.73 -0.34 -12.96 16 10 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 11 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 12 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.09 -0.85 4.95 -104.72 -0.52 -1.37 16 21 C -0.11 -0.99 9.06 -39.68 -0.36 -1.35 16 22 C -0.11 -0.93 9.61 -39.44 -0.38 -1.31 16 23 C -0.08 -0.60 5.73 -104.62 -0.60 -1.20 16 24 C -0.07 -0.59 5.74 -104.61 -0.60 -1.19 16 25 C -0.11 -0.91 9.24 -39.44 -0.36 -1.27 16 26 C -0.08 -0.49 5.67 -28.05 -0.16 -0.65 16 27 C -0.12 -0.61 5.97 -26.70 -0.16 -0.77 16 28 C -0.12 -0.62 6.00 -26.52 -0.16 -0.78 16 29 C -0.08 -0.47 5.68 -27.88 -0.16 -0.63 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.41 4.62 6.35 -40.82 -0.26 4.36 16 34 H 0.41 7.20 7.94 -40.82 -0.32 6.87 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.12 0.97 6.93 -52.48 -0.36 0.61 16 41 H 0.12 0.79 8.05 -52.49 -0.42 0.36 16 42 H 0.12 0.89 8.03 -52.49 -0.42 0.47 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 47 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 LS Contribution 411.03 15.07 6.19 6.19 Total: -1.00 -31.49 411.03 -10.63 -42.12 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.05 Total: 5.51 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -4.06 Total: -4.33 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.12 Total: -47.05 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.49 -10.63 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261186262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.295 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds