Wall clock time and date at job start Wed Apr 1 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47348 * 2 1 4 4 N 1.46501 * 109.47221 * 240.00118 * 2 1 3 5 5 C 1.34773 * 120.00014 * 85.00032 * 4 2 1 6 6 O 1.21357 * 119.99916 * 0.02562 * 5 4 2 7 7 C 1.49447 * 120.00171 * 180.02562 * 5 4 2 8 8 O 1.21346 * 120.00302 * 359.97438 * 7 5 4 9 9 N 1.34785 * 119.99946 * 179.97438 * 7 5 4 10 10 C 1.46501 * 119.99789 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46837 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00291 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99833 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47457 * 60.00055 * 16 14 12 18 18 H 1.48503 * 109.47056 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46977 * 299.99756 * 16 14 12 20 20 C 1.50700 * 109.46985 * 120.00536 * 2 1 3 21 21 C 1.38263 * 120.11913 * 80.02253 * 20 2 1 22 22 C 1.37934 * 119.77354 * 180.12248 * 21 20 2 23 23 C 1.38911 * 120.54492 * 0.03068 * 22 21 20 24 24 C 1.37664 * 119.67945 * 359.40742 * 23 22 21 25 25 C 1.37941 * 120.11119 * 259.99834 * 20 2 1 26 26 C 1.50634 * 122.56129 * 181.00776 * 24 23 22 27 27 C 1.52731 * 110.57413 * 342.19283 * 26 24 23 28 28 C 1.53323 * 108.39439 * 51.19160 * 27 26 24 29 29 C 1.50623 * 117.75808 * 179.32558 * 23 22 21 30 30 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46855 * 299.99627 * 1 2 3 32 32 H 1.09003 * 109.47264 * 59.99684 * 1 2 3 33 33 H 0.96995 * 120.00544 * 265.00284 * 4 2 1 34 34 H 0.96993 * 120.00019 * 0.02562 * 9 7 5 35 35 H 1.09001 * 109.47490 * 300.00370 * 10 9 7 36 36 H 1.09002 * 109.46899 * 60.00135 * 10 9 7 37 37 H 1.09001 * 109.47282 * 300.00431 * 11 10 9 38 38 H 1.09007 * 109.46809 * 60.00251 * 11 10 9 39 39 H 0.97003 * 119.99921 * 180.02562 * 15 14 12 40 40 H 1.08003 * 120.10746 * 0.14179 * 21 20 2 41 41 H 1.07999 * 119.72544 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.72708 * 359.97438 * 25 20 2 43 43 H 1.08995 * 109.25078 * 102.47570 * 26 24 23 44 44 H 1.08996 * 109.25356 * 221.90912 * 26 24 23 45 45 H 1.08998 * 109.67889 * 170.91597 * 27 26 24 46 46 H 1.08997 * 109.68152 * 291.46137 * 27 26 24 47 47 H 1.09000 * 109.67877 * 49.92177 * 28 27 26 48 48 H 1.08999 * 109.67645 * 170.46352 * 28 27 26 49 49 H 1.09002 * 109.25136 * 282.66358 * 29 23 22 50 50 H 1.09002 * 109.25489 * 42.08408 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8589 1.1594 -2.4114 7 6 2.6447 -0.7228 -3.5775 8 8 2.9333 -1.9002 -3.5231 9 7 2.7729 -0.0505 -4.7386 10 6 3.2613 -0.7410 -5.9348 11 6 3.3128 0.2421 -7.1060 12 6 3.8157 -0.4681 -8.3363 13 1 4.0726 -1.5160 -8.2878 14 6 3.9480 0.2199 -9.5238 15 7 3.6358 1.4961 -9.5826 16 14 4.5708 -0.6606 -11.0490 17 1 3.6542 -1.7801 -11.3833 18 1 4.6220 0.2940 -12.1854 19 1 5.9319 -1.1954 -10.7907 20 6 2.0323 -0.7105 1.2304 21 6 2.0682 -2.0922 1.2676 22 6 2.5269 -2.7352 2.3984 23 6 2.9529 -2.0061 3.5014 24 6 2.9281 -0.6303 3.4600 25 6 2.4583 0.0154 2.3233 26 6 3.3954 0.2240 4.6093 27 6 3.4563 -0.5952 5.8969 28 6 4.2616 -1.8705 5.6213 29 6 3.4269 -2.7724 4.7084 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6317 -1.1527 34 1 2.5426 0.8907 -4.7820 35 1 4.2607 -1.1329 -5.7456 36 1 2.5890 -1.5634 -6.1795 37 1 2.3136 0.6344 -7.2953 38 1 3.9854 1.0642 -6.8609 39 1 3.7285 1.9801 -10.4182 40 1 1.7384 -2.6659 0.4141 41 1 2.5550 -3.8145 2.4265 42 1 2.4308 1.0946 2.2931 43 1 4.3874 0.6161 4.3854 44 1 2.7030 1.0549 4.7442 45 1 3.9451 -0.0142 6.6788 46 1 2.4468 -0.8594 6.2120 47 1 5.2021 -1.6127 5.1345 48 1 4.4630 -2.3873 6.5596 49 1 2.5637 -3.1541 5.2536 50 1 4.0445 -3.6095 4.3829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261186262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:57 Heat of formation + Delta-G solvation = -97.492001 kcal Electronic energy + Delta-G solvation = -28684.386584 eV Core-core repulsion = 24674.049623 eV Total energy + Delta-G solvation = -4010.336961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90157 -41.05042 -39.74918 -37.98087 -36.84566 -35.80176 -34.82587 -33.56764 -32.26692 -31.69083 -30.48306 -29.37147 -27.52272 -25.86269 -24.64070 -24.19042 -23.25996 -22.85594 -22.20801 -21.40168 -20.12109 -19.56292 -18.59024 -17.94648 -17.40926 -17.10045 -16.66495 -16.56241 -16.39281 -16.11096 -15.86659 -15.73282 -15.34550 -15.01024 -14.82697 -14.69041 -14.49382 -14.34338 -14.30475 -14.13310 -13.61673 -13.41322 -13.28089 -13.22362 -12.93286 -12.89848 -12.76314 -12.59543 -12.54744 -12.27915 -12.24908 -12.00741 -11.75048 -11.69160 -11.46221 -11.30418 -11.22181 -10.74026 -10.61198 -10.45474 -10.22075 -9.66304 -9.39882 -8.23353 -6.34791 0.26221 0.32338 0.43112 1.29693 1.43582 1.45564 1.53751 2.08632 2.39547 2.61393 2.77546 3.11465 3.38772 3.45301 3.72251 3.84487 3.99947 4.06619 4.09788 4.17903 4.24338 4.36312 4.37658 4.38298 4.44004 4.57755 4.61651 4.67830 4.70270 4.79957 4.81317 4.92654 4.96978 5.04169 5.05904 5.06776 5.12113 5.15394 5.16763 5.22355 5.32430 5.41284 5.46595 5.53133 5.54118 5.59258 5.73873 5.75000 5.90128 6.07648 6.12425 6.32043 6.66569 6.78702 6.89442 7.34676 8.88345 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.001632 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.762644 B =17149.958772 C =17514.059259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 H 0.092 0.908 4 N -0.684 5.684 5 C 0.517 3.483 6 O -0.537 6.537 7 C 0.500 3.500 8 O -0.549 6.549 9 N -0.688 5.688 10 C 0.138 3.862 11 C 0.018 3.982 12 C -0.547 4.547 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.927 5.927 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.082 4.082 24 C -0.082 4.082 25 C -0.115 4.115 26 C -0.083 4.083 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.082 4.082 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.416 0.584 34 H 0.415 0.585 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -6.058 34.943 35.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.081 3.919 3 H 0.110 0.890 4 N -0.338 5.338 5 C 0.297 3.703 6 O -0.414 6.414 7 C 0.281 3.719 8 O -0.427 6.427 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.019 4.019 12 C -0.585 4.585 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.083 4.083 24 C -0.082 4.082 25 C -0.133 4.133 26 C -0.120 4.120 27 C -0.156 4.156 28 C -0.158 4.158 29 C -0.119 4.119 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.255 0.745 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.448 -5.901 34.816 35.481 hybrid contribution 0.210 -0.073 -1.380 1.397 sum -3.238 -5.975 33.437 34.120 Atomic orbital electron populations 1.22133 0.92761 1.03209 1.03072 1.19964 0.95220 0.96302 0.80432 0.88955 1.45938 1.64521 1.15160 1.08175 1.19961 0.78868 0.86640 0.84808 1.90755 1.49668 1.15936 1.85081 1.20321 0.79668 0.86940 0.85015 1.90714 1.50541 1.16091 1.85399 1.46070 1.63368 1.15285 1.09159 1.21491 0.98485 0.95751 0.82773 1.19182 0.96538 0.94355 0.91864 1.21422 1.44788 0.97141 0.95154 0.91693 1.25919 0.95351 0.95606 1.02465 1.70073 1.49009 1.09668 1.27910 0.85453 0.79179 0.78243 0.77887 1.19179 1.20826 1.19233 1.19681 1.01418 0.94234 0.94961 1.21003 1.00462 0.93722 0.98950 1.21374 0.99067 1.00789 0.92812 1.19953 0.98772 0.93148 0.96378 1.19839 0.98930 0.93523 0.95902 1.21160 0.98983 1.00420 0.92745 1.20533 1.01790 0.97378 0.92256 1.21554 1.00897 0.96501 0.96622 1.21630 0.98192 0.96171 0.99792 1.20598 1.00222 0.97723 0.93319 0.91379 0.89511 0.92858 0.74505 0.74891 0.92046 0.91945 0.97350 0.97406 0.92578 0.85429 0.84437 0.84976 0.90447 0.89973 0.90274 0.91625 0.92131 0.90121 0.89687 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.46 71.98 0.68 -1.99 16 2 C 0.18 3.61 2.78 44.24 0.12 3.73 16 3 H 0.09 1.98 7.44 -2.39 -0.02 1.96 16 4 N -0.68 -16.02 5.02 -447.44 -2.25 -18.27 16 5 C 0.52 15.51 7.85 87.27 0.69 16.20 16 6 O -0.54 -18.00 16.14 -3.27 -0.05 -18.05 16 7 C 0.50 17.33 7.89 87.27 0.69 18.02 16 8 O -0.55 -20.68 16.48 -3.24 -0.05 -20.73 16 9 N -0.69 -25.49 5.55 -464.40 -2.58 -28.07 16 10 C 0.14 5.84 5.61 86.38 0.48 6.32 16 11 C 0.02 0.92 5.09 29.85 0.15 1.07 16 12 C -0.55 -30.32 9.11 25.60 0.23 -30.09 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.01 0.30 5.46 84.66 0.46 0.77 16 15 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 16 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.10 -1.79 4.95 -19.93 -0.10 -1.89 16 21 C -0.12 -2.03 9.06 22.20 0.20 -1.83 16 22 C -0.12 -1.82 9.61 22.36 0.21 -1.61 16 23 C -0.08 -1.18 5.73 -19.86 -0.11 -1.30 16 24 C -0.08 -1.21 5.74 -19.86 -0.11 -1.32 16 25 C -0.11 -1.85 9.24 22.36 0.21 -1.65 16 26 C -0.08 -0.88 5.67 29.74 0.17 -0.71 16 27 C -0.12 -0.97 5.97 30.61 0.18 -0.78 16 28 C -0.12 -1.01 6.00 30.73 0.18 -0.82 16 29 C -0.08 -0.80 5.68 29.85 0.17 -0.64 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.42 9.00 6.35 -92.71 -0.59 8.42 16 34 H 0.41 14.79 7.94 -92.71 -0.74 14.06 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.13 1.89 6.93 -2.91 -0.02 1.87 16 41 H 0.14 1.54 8.05 -2.91 -0.02 1.52 16 42 H 0.13 1.80 8.03 -2.91 -0.02 1.78 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 47 H 0.06 0.59 8.10 -2.39 -0.02 0.57 16 48 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 Total: -1.00 -66.38 411.03 1.52 -64.86 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.37 Total: 27.92 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.51 Total: 1.48 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.54 Total: -100.97 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.11 Total: -38.78 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.38 1.52 -64.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261186262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.629 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds